3300008061: Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 159571453 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008061
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052943 | Ga0111056
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 159571453 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 41713671
• Sequencing Scaffolds: 9
• Novel Protein Genes: 11
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	5
Not Available	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040149	Metagenome	162	N
F045567	Metagenome	152	N
F047508	Metagenome	149	N
F051214	Metagenome	144	N
F053092	Metagenome	141	N
F055792	Metagenome	138	N
F071329	Metagenome	122	N
F084342	Metagenome	112	N
F090517	Metagenome	108	N
F094006	Metagenome	106	Y
F098763	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0111056_101041	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	4014
Ga0111056_101224	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	3557
Ga0111056_101449	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	3153
Ga0111056_101618	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	2908
Ga0111056_102873	Not Available	1900
Ga0111056_103926	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1483
Ga0111056_104504	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	1341
Ga0111056_108493	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	836
Ga0111056_115082	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii	554

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0111056_101041	Ga0111056_1010412	F040149	VADEGAKELRWKVLIEEQGIPVLFVEVVAWYDGRVSSSEILRSVGIALEREPRLAPVWSHDSEDAIHDFIYDISVPKGHTLTAVRERETVVMQLFNIHRMF*
Ga0111056_101041	Ga0111056_1010413	F055792	MEIASQTLDSTSAVTHRILLLTTQLGESLLASFGAEDGVIAEAMVTRALESNLPIDSTLEEVGPVLIDKGDDGTEAGTTWGRYTLETLQKEGYILFEGSMLPCEARRVDSRSSVKSLDLEPRIIGKAIEAVALPDVTCLDEGIPLQRIGGLRDLLVTPDVSETDHLQTPREEGTDLLQLMGIIARKYQLFHTFVIISSASLRA*
Ga0111056_101224	Ga0111056_1012243	F084342	VSGQCGAKLFLWGGYLALLILRPFFAKAPKETLGQERGLGDAYDKDYQNEKALQWIHRRHILGICKEE*
Ga0111056_101449	Ga0111056_1014494	F045567	MRQRDGRDTLTEELEGGITPLLYRAEGEARRPWVGMVTEDVVHTSTHRVEDALLPIDGDILTPRDGTHIVQTERVVVVLVSQEDSIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHWAATAYLGDTSAGARTEKNYLHVSRRESYHGKEKPHLTEREGAW*
Ga0111056_101618	Ga0111056_1016184	F053092	MQSAQGLILCLTHALLVLGALILEPAEMEDPMDDHTVQLFGILVAKELGIATHRIKADEHVPRNHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTELVAELADTTVIASSDLTDPVAKDTLSEARLLDVFVCIVSYKLRFFRHK*
Ga0111056_102873	Ga0111056_1028732	F047508	VIEFVGEPIHIGMLGHRLVEGRVKYPYLRRIGEYLRHSFDTEDVGWVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTDGVDLIEGLYEVLFFENVEDNLYAACVVRNVKVALDLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELNEGELQGGAATVEDQDFHKVLYYMVRCELIPSSP*
Ga0111056_103926	Ga0111056_1039261	F094006	MRGALEPADPTGALYEPAVCVEAHIGELQAGGIAHRGLFAFGGSNLLAVAELGAEAPHAIDMYDIALCKPLSELFAEELEYAFNFGA*
Ga0111056_104504	Ga0111056_1045042	F098763	MNGRASLRVLSTALHLATKLFEAVVRTTISYDPSDEVEGKGGMNAIPTAVDE*
Ga0111056_108493	Ga0111056_1084931	F051214	MPGKIVTHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQVMHDKIDLK
Ga0111056_108493	Ga0111056_1084932	F071329	MLPVAKIIISGLSSIGAGMIASKLTKPIVSNANRIAKILLWFGSVGTGVAASAIVAREVEKQFDETVKAVKEARDHIEIED*
Ga0111056_115082	Ga0111056_1150821	F090517	MNRRIFSFCGLLLGLLFLASSCKKDTPLPPQLSEGELRQTVWNGTLEYKSAKRGSYSVYLNFLSDSEVEVSAYDSKDPTDPYYVQARYYYTLTDRIFTLKTQVDYELNPPMDKNTWYLIRKEPSLLVFQ