NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300007803

3300007803: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 763435843 reassembly



Overview

Basic Information
IMG/M Taxon OID3300007803 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0063646 | Gp0052854 | Ga0105780
Sample NameHuman tongue dorsum microbial communities from NIH, USA - visit 1, subject 763435843 reassembly
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size115796215
Sequencing Scaffolds24
Novel Protein Genes26
Associated Families21

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 4734
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 2797
All Organisms → cellular organisms → Bacteria3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae1
Not Available2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030786Metagenome184N
F036281Metagenome170N
F045567Metagenome152N
F053092Metagenome141N
F055792Metagenome138N
F068942Metagenome124N
F071328Metagenome122N
F072446Metagenome121N
F076191Metagenome118N
F077404Metagenome117N
F080164Metagenome115N
F084342Metagenome112N
F090517Metagenome108N
F094006Metagenome106Y
F094007Metagenome106N
F097490Metagenome104N
F097527Metagenome104N
F098763Metagenome103N
F099454Metagenome103N
F103432Metagenome101N
F105376Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0105780_100026All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473115866Open in IMG/M
Ga0105780_100132All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria52415Open in IMG/M
Ga0105780_100295All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 47336177Open in IMG/M
Ga0105780_100310All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 47335579Open in IMG/M
Ga0105780_100681All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus20418Open in IMG/M
Ga0105780_100683All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 27920404Open in IMG/M
Ga0105780_100717All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 47319786Open in IMG/M
Ga0105780_100774All Organisms → cellular organisms → Bacteria18435Open in IMG/M
Ga0105780_100799All Organisms → cellular organisms → Bacteria18001Open in IMG/M
Ga0105780_100814All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 27917859Open in IMG/M
Ga0105780_101116All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 27914319Open in IMG/M
Ga0105780_101374All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 27912187Open in IMG/M
Ga0105780_101606All Organisms → cellular organisms → Bacteria10682Open in IMG/M
Ga0105780_102892All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 2796750Open in IMG/M
Ga0105780_102984All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 2796564Open in IMG/M
Ga0105780_104747All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes4297Open in IMG/M
Ga0105780_108010All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas2566Open in IMG/M
Ga0105780_108417All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 2792445Open in IMG/M
Ga0105780_116522All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae1185Open in IMG/M
Ga0105780_118286Not Available1063Open in IMG/M
Ga0105780_118431All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1054Open in IMG/M
Ga0105780_119329All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii1001Open in IMG/M
Ga0105780_121988Not Available869Open in IMG/M
Ga0105780_126148All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes723Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0105780_100026Ga0105780_10002673F072446MHEFDAQAHKNKFNPPTHPQMKKLVFLLFGLCLYCFTACDSDHEPTKPVRPFHGDTLAQIAWNFPYIVEHHYHSIPGIVPEGTTYRVPVIPRSVEDRTKKEYNEQDVDKVAHLVFRATVHGDTLNRHKKELETLARQLHALILPTIGTSPVLCGVKSIKAVGVAENGRTYDLRREMKLRIRDYKSRRKYNSGRLVTLDCEDTESMTARYVVVLGEIREAELAEHIQPELKFYLPVKRCMDFSSIRFDITLFNGEVLSFQHKLPSKSVLQELPNKSVLENYKQYGFIPESTYFTTLWPVPEKEIER*
Ga0105780_100132Ga0105780_10013217F076191MKIIAENPAEEALLWRIKALSDELVNQDNRSTSMPVWTILDNNKAGKDYGAVMYFTGKAAEQHIKENVHHYEKPMTYIRSAHDNRELKDVIHLLILAGGNEIPSNHYGTLRDA*
Ga0105780_100132Ga0105780_10013235F105376MNNTNKEVSAKEFGALEADVRHIKEGVDKHTITLERIENIAQANVTQAQLKTYIAEHEKESEEKYVKRTEIEGVMNFWSLVTSNLAKLFAIALVGLAIYATNNLIQQNKAVTELQEEVQQTVRRK*
Ga0105780_100295Ga0105780_10029518F080164MVGLTLCAAPQVTLRERANAFPLITEKEASEIYEPYAWRLPVVPLSLDNREIFNFVKYPTLPSLFGGILTVRVLVVGDTVAVHQDLMDDFAKRCRTTLGLGVRTAPKLFGIKGMHVYGVQKDGSRQAVDEQVTLHLPGFEKAEKPFLYKGQAGRLVLCEYYSSHRGDLLLDAANARPEIFGELNPVVDFHFPVELRRAYAWLLLEIELEDGTKLSTSLQHYDEQTSILDHPARS*
Ga0105780_100295Ga0105780_10029519F103432MKLIHSLFSLSLLLALSGLFCTTACQDEAEPTQRAGLISTDSLIHAAKVYDGKAFEHVVSTTAAGLRVSEPRRIVPMLPRQLHVEMEGKTIFRRHNLPSVSAYSFQVLAVGDTIYRQKESDAQFNADLDALFHQSIGIAPRLFGVKELSVLGIDSRGKTRDLGNYSCPLLQGKIKNVNYRTREGVFHEHYEAASVDTFSVKDEWLLNTKAEPSLYVPSFRLLVWDQPAEGCTKLRFTLTLVDGRSLVTEVPLY*
Ga0105780_100310Ga0105780_10031035F077404MNILKTVFAFFFALCFMMGANSYAQKTECINAEASKRELKRNAVYLPPALEEYADTTLLHQRFNVENKGNYLYTPFTENNEPTIPFNYGFLHPLGERFYNCFMGKVDRILRPKEDKGFIILTNYLVVLDDKYAFDTSNKDTSKLADLKYLDFRRIKSDFSYGHPYQGFTDYDRVELSNFVQSYGRRAALETANAWVMASYPFSLQSTKFENLYTRGRKLILTDGKTTLYLYFLMIDSVALNFDTEVLPYIKGVFRFNRIQKR*
Ga0105780_100681Ga0105780_10068127F097527MIYFKMEKIGNSAHNKEKKTRSENLVFNTIPAAGVE
Ga0105780_100683Ga0105780_10068313F045567MRQRDGRDTLTEELEGSITPLLYRAEGETRRPWVRMVTEDVVHTSTHRVEDALLPVDGDILTPRDGTHIVQTERVVVVFVSQEDRIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHWAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSRERGCVVERVVR*
Ga0105780_100717Ga0105780_1007178F071328MKWEFILEGEYIVEFVKLCKHLVLERTIDPKKHQAAAICLRYSSQLLLKKRRAIRRLGVEKEYVSAILRQYGIHYREYGDNEHRVFFLDRGINIYFSKHDKSSIYIIQRIEFSNEEYRSFILKVLPVKKSEW*
Ga0105780_100774Ga0105780_10077423F068942MIRKILSLPTLALCFTLGSALFTGCNEDYIKNTETKVRWSNVKNPKYGDPINITLKAEGETFTTVGDHSWISFSNDASTLDTFTRHDIPEVDKDTAYYKDIVIYMTRNERERTTTLKLVAPPNRTQQPKQFDFSIEVSPPGTYFFNVRQPALPAKAQ*
Ga0105780_100799Ga0105780_1007996F094007MKSKTVEVLELARPNRAGIIDVVDSDGNVVPLDYSGEDFAPDVNSYSGKDFTKRNRIIVEMCDLFGRIRRRAGFAERHRGRGDYDRARRIERNRGSDISEVGRLAISACEACPLKLDCELYGKLGGAVLSDVLDYKKVRTATSLTKAGKKRSGWNKGCIDNNA*
Ga0105780_100814Ga0105780_1008148F094006MWSALEPAGPTGALYESAVCVEAHIGELQTGGIACHGLFAFEGSNVLAVAELGAEAPHAINMYDIAVCEPLSKLFAKELEYAFNFGA*
Ga0105780_101116Ga0105780_1011167F099454MKASKLLWAVVVALTFVFTSCDRVTDEPTIEGKMNKFFDSQAQRKSFRVLTASGKPYNHKIDWHIIGVLDPKSETYLTKKVDTLSNGDLKISYDWVAFIVKENKSVIDVEVQKNETGQDRSVDFVAKDNHKGLDSPSMTIIQRAK*
Ga0105780_101374Ga0105780_1013744F090517MNRRIFSFSGLLLGLLFLASSCKKDTPRLRLSSVELRQTVWNGTLEYKSAKYGPYFVYLSFVSDSIVEVSTFATTDLTVAYDSKDLCSYTMDDRILTLRARDEPYLNVSIDRNSWYLIRKEPSLLVFQANAGNPASEATLTLRKKL*
Ga0105780_101606Ga0105780_1016062F071328MSRKHWTFIILSIVKKSQHIERMKWEFISEVECIVEFVKLCKHLVLERTIDPKIHQTTAIYLRYSQQLLLKKKRAIRRLGIGKKNVSAILRLCGIHYREYGDDEHRVFFLDTDVNIYFCKHYQLPIYILQRIEFSNKEYRSFILKVLPVKKGEW*
Ga0105780_102892Ga0105780_1028924F053092MQSAQGLILCLTHALLVLGALVLEPAEMEDTMDDHAVQLFGVLGAKELRIATHRIKADEHVPRDHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTELVAELTDTTVIAGSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHK*
Ga0105780_102984Ga0105780_1029846F084342LFLGGYLAIPICRPFFAQALKETLGQERSLGDAYDKDYQNEKALQWIHRRHILGICKEE*
Ga0105780_104747Ga0105780_1047474F030786MKRTKIHNVVFQMLVVMIVTGSLQLLLKNGSAVKGGNAMGAKKISLADITGGDNSETGVLKVKYFDDEGADKIFENNNNRILNTINSQHISYNSQSAEYSKPQLFLLYQSLKVDC*
Ga0105780_108010Ga0105780_1080102F099454MKASKLLWAVVMAFTFVFTSCDRLTDEPTLEDRGYKYFDSTAQRKSFRVVTASGKPYNHKIDWHIIGIRDSKSDTYLTKKVDTLSNGDLKISYDWISFTVREKKSVIDVEVQKNETGEDRSVKFVAQDNHKGLASPSMKVIQQAK*
Ga0105780_108417Ga0105780_1084172F098763MDGRTSLRVLSPALYLATKLFEAVVWTTIADDSRDEVEGKGGMNAVPTAVDE*
Ga0105780_116522Ga0105780_1165221F055792VEIAGEALDSTSAVAHRILFLTTQLGESLLASFGTEDGVIAEAMVTRALERDLAIDCTLEEVRPVFVDESDDGTEAGTTWSRYPLETFQKEGYILFEGRMLPCEACGVDSRSSVKSLDLESRIIGEAIEAVALPDVTCLDESIPLQGIGGLRDLLVTPDVSET
Ga0105780_118286Ga0105780_1182862F055792MEIASQALDSTSAVTHRILLLTTQLGESLLASFGAEDGVIAEAMVTRALESNLSIDSTLEEVGPVLIDKGDDGTEASTTWGRYTLETLQKEGYILFEGSMLPCEACRVDSRSSVKSLNLEPRIIGKAIEAVALPHVARLNEGIPLQRIGGLRDLLVTPDVSQADDLQTSREEGTNLLQLMGIIARKYQLFHTFVS*
Ga0105780_118431Ga0105780_1184311F097490MFLKTQKMNKKMNVFCKIILPLLCIISCSKRDEIEVYNMELDENKKEVLVEIRNNTENNYYLLSPIVSIMTKHLQYIDGEMIEGQIHHKKLDSIVCSVYIWDDICKEEYYAMRDIVLLPKKSVKKIKYKYDNEEYIEIETVHIGFPYNGYDNEI
Ga0105780_119329Ga0105780_1193291F090517MNRRILSFCGLLLGLLFLASSCKNKKDTPRLQLSSVELRQTVWNGTLEYKNAKRDSYSVYLNFLSDSEVEVSGYDLKDPTYSRDLQVRYYYTITDRIFTLKAQVNRELRPPMDQNIWYLIRKEPSLLVFQANAGNPDLEATLTLRKKL*
Ga0105780_121988Ga0105780_1219881F077404IYIPPALEQYADTALLHQRFNVENKGNYLYTPFTEDNEPTIPFNYGFLHPLGERFYNCFMGKVDRILRPKADKGFIILTSYLVVLGDSYAFDTSNKDTSKLADLKYLDFRHIKRDFSYGHPYQGFTPNDRIELSNFVQSYGRQAALETANAWVMASYPFSLQSTKFENRYTRGRKLILTDGHSTLYLYFLMIDSVAPNFDTEVLPYIKGVFRFNRFR*
Ga0105780_126148Ga0105780_1261481F036281LRMQYLAKLKQTDGVMLPTFLYRNKDLFITEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWTAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDAQKSKFTRHAMTNEKGHQSYDWVLENVEWAADTIRYF*

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