Basic Information | |
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IMG/M Taxon OID | 3300007803 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0063646 | Gp0052854 | Ga0105780 |
Sample Name | Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 763435843 reassembly |
Sequencing Status | Permanent Draft |
Sequencing Center | Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 115796215 |
Sequencing Scaffolds | 24 |
Novel Protein Genes | 26 |
Associated Families | 21 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473 | 4 |
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus | 1 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279 | 7 |
All Organisms → cellular organisms → Bacteria | 3 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 1 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas | 1 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae | 1 |
Not Available | 2 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | 1 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii | 1 |
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase |
Type | Host-Associated |
Taxonomy | Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | Unclassified |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal surface |
Location Information | ||||||||
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Location | USA: Maryland: Natonal Institute of Health | |||||||
Coordinates | Lat. (o) | 39.0042816 | Long. (o) | -77.1012173 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F030786 | Metagenome | 184 | N |
F036281 | Metagenome | 170 | N |
F045567 | Metagenome | 152 | N |
F053092 | Metagenome | 141 | N |
F055792 | Metagenome | 138 | N |
F068942 | Metagenome | 124 | N |
F071328 | Metagenome | 122 | N |
F072446 | Metagenome | 121 | N |
F076191 | Metagenome | 118 | N |
F077404 | Metagenome | 117 | N |
F080164 | Metagenome | 115 | N |
F084342 | Metagenome | 112 | N |
F090517 | Metagenome | 108 | N |
F094006 | Metagenome | 106 | Y |
F094007 | Metagenome | 106 | N |
F097490 | Metagenome | 104 | N |
F097527 | Metagenome | 104 | N |
F098763 | Metagenome | 103 | N |
F099454 | Metagenome | 103 | N |
F103432 | Metagenome | 101 | N |
F105376 | Metagenome | 100 | N |
Scaffold | Taxonomy | Length | IMG/M Link |
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Ga0105780_100026 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473 | 115866 | Open in IMG/M |
Ga0105780_100132 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria | 52415 | Open in IMG/M |
Ga0105780_100295 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473 | 36177 | Open in IMG/M |
Ga0105780_100310 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473 | 35579 | Open in IMG/M |
Ga0105780_100681 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus | 20418 | Open in IMG/M |
Ga0105780_100683 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279 | 20404 | Open in IMG/M |
Ga0105780_100717 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473 | 19786 | Open in IMG/M |
Ga0105780_100774 | All Organisms → cellular organisms → Bacteria | 18435 | Open in IMG/M |
Ga0105780_100799 | All Organisms → cellular organisms → Bacteria | 18001 | Open in IMG/M |
Ga0105780_100814 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279 | 17859 | Open in IMG/M |
Ga0105780_101116 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279 | 14319 | Open in IMG/M |
Ga0105780_101374 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279 | 12187 | Open in IMG/M |
Ga0105780_101606 | All Organisms → cellular organisms → Bacteria | 10682 | Open in IMG/M |
Ga0105780_102892 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279 | 6750 | Open in IMG/M |
Ga0105780_102984 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279 | 6564 | Open in IMG/M |
Ga0105780_104747 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 4297 | Open in IMG/M |
Ga0105780_108010 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas | 2566 | Open in IMG/M |
Ga0105780_108417 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279 | 2445 | Open in IMG/M |
Ga0105780_116522 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae | 1185 | Open in IMG/M |
Ga0105780_118286 | Not Available | 1063 | Open in IMG/M |
Ga0105780_118431 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | 1054 | Open in IMG/M |
Ga0105780_119329 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii | 1001 | Open in IMG/M |
Ga0105780_121988 | Not Available | 869 | Open in IMG/M |
Ga0105780_126148 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 723 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0105780_100026 | Ga0105780_10002673 | F072446 | MHEFDAQAHKNKFNPPTHPQMKKLVFLLFGLCLYCFTACDSDHEPTKPVRPFHGDTLAQIAWNFPYIVEHHYHSIPGIVPEGTTYRVPVIPRSVEDRTKKEYNEQDVDKVAHLVFRATVHGDTLNRHKKELETLARQLHALILPTIGTSPVLCGVKSIKAVGVAENGRTYDLRREMKLRIRDYKSRRKYNSGRLVTLDCEDTESMTARYVVVLGEIREAELAEHIQPELKFYLPVKRCMDFSSIRFDITLFNGEVLSFQHKLPSKSVLQELPNKSVLENYKQYGFIPESTYFTTLWPVPEKEIER* |
Ga0105780_100132 | Ga0105780_10013217 | F076191 | MKIIAENPAEEALLWRIKALSDELVNQDNRSTSMPVWTILDNNKAGKDYGAVMYFTGKAAEQHIKENVHHYEKPMTYIRSAHDNRELKDVIHLLILAGGNEIPSNHYGTLRDA* |
Ga0105780_100132 | Ga0105780_10013235 | F105376 | MNNTNKEVSAKEFGALEADVRHIKEGVDKHTITLERIENIAQANVTQAQLKTYIAEHEKESEEKYVKRTEIEGVMNFWSLVTSNLAKLFAIALVGLAIYATNNLIQQNKAVTELQEEVQQTVRRK* |
Ga0105780_100295 | Ga0105780_10029518 | F080164 | MVGLTLCAAPQVTLRERANAFPLITEKEASEIYEPYAWRLPVVPLSLDNREIFNFVKYPTLPSLFGGILTVRVLVVGDTVAVHQDLMDDFAKRCRTTLGLGVRTAPKLFGIKGMHVYGVQKDGSRQAVDEQVTLHLPGFEKAEKPFLYKGQAGRLVLCEYYSSHRGDLLLDAANARPEIFGELNPVVDFHFPVELRRAYAWLLLEIELEDGTKLSTSLQHYDEQTSILDHPARS* |
Ga0105780_100295 | Ga0105780_10029519 | F103432 | MKLIHSLFSLSLLLALSGLFCTTACQDEAEPTQRAGLISTDSLIHAAKVYDGKAFEHVVSTTAAGLRVSEPRRIVPMLPRQLHVEMEGKTIFRRHNLPSVSAYSFQVLAVGDTIYRQKESDAQFNADLDALFHQSIGIAPRLFGVKELSVLGIDSRGKTRDLGNYSCPLLQGKIKNVNYRTREGVFHEHYEAASVDTFSVKDEWLLNTKAEPSLYVPSFRLLVWDQPAEGCTKLRFTLTLVDGRSLVTEVPLY* |
Ga0105780_100310 | Ga0105780_10031035 | F077404 | MNILKTVFAFFFALCFMMGANSYAQKTECINAEASKRELKRNAVYLPPALEEYADTTLLHQRFNVENKGNYLYTPFTENNEPTIPFNYGFLHPLGERFYNCFMGKVDRILRPKEDKGFIILTNYLVVLDDKYAFDTSNKDTSKLADLKYLDFRRIKSDFSYGHPYQGFTDYDRVELSNFVQSYGRRAALETANAWVMASYPFSLQSTKFENLYTRGRKLILTDGKTTLYLYFLMIDSVALNFDTEVLPYIKGVFRFNRIQKR* |
Ga0105780_100681 | Ga0105780_10068127 | F097527 | MIYFKMEKIGNSAHNKEKKTRSENLVFNTIPAAGVE |
Ga0105780_100683 | Ga0105780_10068313 | F045567 | MRQRDGRDTLTEELEGSITPLLYRAEGETRRPWVRMVTEDVVHTSTHRVEDALLPVDGDILTPRDGTHIVQTERVVVVFVSQEDRIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHWAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSRERGCVVERVVR* |
Ga0105780_100717 | Ga0105780_1007178 | F071328 | MKWEFILEGEYIVEFVKLCKHLVLERTIDPKKHQAAAICLRYSSQLLLKKRRAIRRLGVEKEYVSAILRQYGIHYREYGDNEHRVFFLDRGINIYFSKHDKSSIYIIQRIEFSNEEYRSFILKVLPVKKSEW* |
Ga0105780_100774 | Ga0105780_10077423 | F068942 | MIRKILSLPTLALCFTLGSALFTGCNEDYIKNTETKVRWSNVKNPKYGDPINITLKAEGETFTTVGDHSWISFSNDASTLDTFTRHDIPEVDKDTAYYKDIVIYMTRNERERTTTLKLVAPPNRTQQPKQFDFSIEVSPPGTYFFNVRQPALPAKAQ* |
Ga0105780_100799 | Ga0105780_1007996 | F094007 | MKSKTVEVLELARPNRAGIIDVVDSDGNVVPLDYSGEDFAPDVNSYSGKDFTKRNRIIVEMCDLFGRIRRRAGFAERHRGRGDYDRARRIERNRGSDISEVGRLAISACEACPLKLDCELYGKLGGAVLSDVLDYKKVRTATSLTKAGKKRSGWNKGCIDNNA* |
Ga0105780_100814 | Ga0105780_1008148 | F094006 | MWSALEPAGPTGALYESAVCVEAHIGELQTGGIACHGLFAFEGSNVLAVAELGAEAPHAINMYDIAVCEPLSKLFAKELEYAFNFGA* |
Ga0105780_101116 | Ga0105780_1011167 | F099454 | MKASKLLWAVVVALTFVFTSCDRVTDEPTIEGKMNKFFDSQAQRKSFRVLTASGKPYNHKIDWHIIGVLDPKSETYLTKKVDTLSNGDLKISYDWVAFIVKENKSVIDVEVQKNETGQDRSVDFVAKDNHKGLDSPSMTIIQRAK* |
Ga0105780_101374 | Ga0105780_1013744 | F090517 | MNRRIFSFSGLLLGLLFLASSCKKDTPRLRLSSVELRQTVWNGTLEYKSAKYGPYFVYLSFVSDSIVEVSTFATTDLTVAYDSKDLCSYTMDDRILTLRARDEPYLNVSIDRNSWYLIRKEPSLLVFQANAGNPASEATLTLRKKL* |
Ga0105780_101606 | Ga0105780_1016062 | F071328 | MSRKHWTFIILSIVKKSQHIERMKWEFISEVECIVEFVKLCKHLVLERTIDPKIHQTTAIYLRYSQQLLLKKKRAIRRLGIGKKNVSAILRLCGIHYREYGDDEHRVFFLDTDVNIYFCKHYQLPIYILQRIEFSNKEYRSFILKVLPVKKGEW* |
Ga0105780_102892 | Ga0105780_1028924 | F053092 | MQSAQGLILCLTHALLVLGALVLEPAEMEDTMDDHAVQLFGVLGAKELRIATHRIKADEHVPRDHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTELVAELTDTTVIAGSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHK* |
Ga0105780_102984 | Ga0105780_1029846 | F084342 | LFLGGYLAIPICRPFFAQALKETLGQERSLGDAYDKDYQNEKALQWIHRRHILGICKEE* |
Ga0105780_104747 | Ga0105780_1047474 | F030786 | MKRTKIHNVVFQMLVVMIVTGSLQLLLKNGSAVKGGNAMGAKKISLADITGGDNSETGVLKVKYFDDEGADKIFENNNNRILNTINSQHISYNSQSAEYSKPQLFLLYQSLKVDC* |
Ga0105780_108010 | Ga0105780_1080102 | F099454 | MKASKLLWAVVMAFTFVFTSCDRLTDEPTLEDRGYKYFDSTAQRKSFRVVTASGKPYNHKIDWHIIGIRDSKSDTYLTKKVDTLSNGDLKISYDWISFTVREKKSVIDVEVQKNETGEDRSVKFVAQDNHKGLASPSMKVIQQAK* |
Ga0105780_108417 | Ga0105780_1084172 | F098763 | MDGRTSLRVLSPALYLATKLFEAVVWTTIADDSRDEVEGKGGMNAVPTAVDE* |
Ga0105780_116522 | Ga0105780_1165221 | F055792 | VEIAGEALDSTSAVAHRILFLTTQLGESLLASFGTEDGVIAEAMVTRALERDLAIDCTLEEVRPVFVDESDDGTEAGTTWSRYPLETFQKEGYILFEGRMLPCEACGVDSRSSVKSLDLESRIIGEAIEAVALPDVTCLDESIPLQGIGGLRDLLVTPDVSET |
Ga0105780_118286 | Ga0105780_1182862 | F055792 | MEIASQALDSTSAVTHRILLLTTQLGESLLASFGAEDGVIAEAMVTRALESNLSIDSTLEEVGPVLIDKGDDGTEASTTWGRYTLETLQKEGYILFEGSMLPCEACRVDSRSSVKSLNLEPRIIGKAIEAVALPHVARLNEGIPLQRIGGLRDLLVTPDVSQADDLQTSREEGTNLLQLMGIIARKYQLFHTFVS* |
Ga0105780_118431 | Ga0105780_1184311 | F097490 | MFLKTQKMNKKMNVFCKIILPLLCIISCSKRDEIEVYNMELDENKKEVLVEIRNNTENNYYLLSPIVSIMTKHLQYIDGEMIEGQIHHKKLDSIVCSVYIWDDICKEEYYAMRDIVLLPKKSVKKIKYKYDNEEYIEIETVHIGFPYNGYDNEI |
Ga0105780_119329 | Ga0105780_1193291 | F090517 | MNRRILSFCGLLLGLLFLASSCKNKKDTPRLQLSSVELRQTVWNGTLEYKNAKRDSYSVYLNFLSDSEVEVSGYDLKDPTYSRDLQVRYYYTITDRIFTLKAQVNRELRPPMDQNIWYLIRKEPSLLVFQANAGNPDLEATLTLRKKL* |
Ga0105780_121988 | Ga0105780_1219881 | F077404 | IYIPPALEQYADTALLHQRFNVENKGNYLYTPFTEDNEPTIPFNYGFLHPLGERFYNCFMGKVDRILRPKADKGFIILTSYLVVLGDSYAFDTSNKDTSKLADLKYLDFRHIKRDFSYGHPYQGFTPNDRIELSNFVQSYGRQAALETANAWVMASYPFSLQSTKFENRYTRGRKLILTDGHSTLYLYFLMIDSVAPNFDTEVLPYIKGVFRFNRFR* |
Ga0105780_126148 | Ga0105780_1261481 | F036281 | LRMQYLAKLKQTDGVMLPTFLYRNKDLFITEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWTAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDAQKSKFTRHAMTNEKGHQSYDWVLENVEWAADTIRYF* |
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