3300007776: Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS915_Marker113_DNA CLC_assembly

Overview

Basic Information

• IMG/M Taxon OID: 3300007776
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111355 | Gp0128098 | Ga0105674
• Sample Name: Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS915_Marker113_DNA CLC_assembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Marine Biological Laboratory
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 404034605
• Sequencing Scaffolds: 57
• Novel Protein Genes: 67
• Associated Families: 67

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	4
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED275	1
Not Available	33
All Organisms → Viruses → Predicted Viral	4
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	2
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	1
All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → unclassified Phycisphaerales → Phycisphaerales bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Vent Fluid, Hydrothermal Vents → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine hydrothermal vent biome → marine hydrothermal vent → hydrothermal fluid
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Marker113 Vent, Axial Seamount, northeast Pacific Ocean
• Coordinates
  • Lat. (^o): 45.9228
  • Long. (^o): -129.9883
  • Alt. (m): N/A
  • Depth (m): 1520

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000060	Metagenome / Metatranscriptome	2944	Y
F000567	Metagenome / Metatranscriptome	1020	Y
F001066	Metagenome / Metatranscriptome	788	Y
F002274	Metagenome / Metatranscriptome	576	Y
F002380	Metagenome	566	Y
F002425	Metagenome / Metatranscriptome	560	Y
F002453	Metagenome / Metatranscriptome	558	Y
F002745	Metagenome	533	Y
F003285	Metagenome / Metatranscriptome	496	Y
F003410	Metagenome / Metatranscriptome	488	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0105674_1020394	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	8866
Ga0105674_1035490	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	675
Ga0105674_1042132	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	1282
Ga0105674_1053581	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED275	519
Ga0105674_1060926	Not Available	1099
Ga0105674_1088281	Not Available	525
Ga0105674_1104043	Not Available	838
Ga0105674_1106383	Not Available	652
Ga0105674_1107011	All Organisms → Viruses → Predicted Viral	1011
Ga0105674_1109772	Not Available	596

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0105674_1020394	Ga0105674_10203943	F011939	MALKAANAFSKRIWKMPKITMEQIEAALQKEVQAIDKSVKLVAVQAGKKKDCYRVTLLKDGKSGSAELKKDVIKRHLAGEGRGRQLRKALGKAVSHLSIKYAR*
Ga0105674_1035490	Ga0105674_10354902	F013096	MLTDVVGDSAVGLSTLSQTNTVAVYDPEAPGVHDNAGL
Ga0105674_1042132	Ga0105674_10421322	F010686	LDKCGQATKGVWGMSWHQEAMKGVEVCEKLGGVDKQMMIPRFLNDVW*
Ga0105674_1053581	Ga0105674_10535811	F022778	MSDLIEKRKSNGSNNTKRRIVSISSCHKADDGTYVFVGKSKLHGSVRDTKNKTDNVRRQFKSTCHE*
Ga0105674_1060926	Ga0105674_10609262	F013191	VIGNGQSKSVSDFNLFKKHTTYGCDLIYRKFVPNHLICQDIDAQLELITNDLTKKYKCYFRGFDLIPSMHYDTLKQTTDKRLKIGENQPKTDHFIQFAHEGVMYFIWIDSSDPTENIAWWSDTTFDEWVSDTVALRLAAQQNPSETFFYCVGFDYYHDQTKDGIFLGSSITEFHDEKQDSWIGQHKHIEEEYPNSKFIFGKDMDYGEFENLLNK*
Ga0105674_1060926	Ga0105674_10609263	F090849	MAADNKVPDNLNYLSNISFRLTMQDAPNITWFCQAANVPGVSIE
Ga0105674_1088281	Ga0105674_10882811	F000567	MKESLLKLTQKITTWHEGMFKYLTLKSKTSVFFTWLLVFICLYEIFEHIIIPIVLIWWGFS*
Ga0105674_1088281	Ga0105674_10882812	F011409	MGECLKNKRLAERTIQPERVQFACGKDVKAEVEYIEEKGQTTARVRIIKVIESGYEEGLYEGSSRY*
Ga0105674_1104043	Ga0105674_11040432	F006640	MIGFLIFGPVVLSTICLWILIEERRSWKFLVWFIPILLLIVTSTYVTYTSILGFPKFGTPEKGMYLRHYIDEPNWIYLWVLSKKNVPMSYQLVYTRKKH
Ga0105674_1105163	Ga0105674_11051631	F060608	WHCDMRESMKNSFGSGIWPQGNTPIRVKIEDWGVAVNKLDGKARVCGFETL*
Ga0105674_1106383	Ga0105674_11063832	F079211	MENMKNKNTTYNVEFTTAFAGSRFVNIVLEAKDENQAHWVARNLCRFGYISNTTKTDEVAAFTEATHDWAYDVDYEVYS*
Ga0105674_1107011	Ga0105674_11070112	F006126	MSDLSFKKFTRQLNERRYIGPQGTVEYKKLSPKMRVAINDVYSMINKVSDPIVSKIEGIIRAVSKKHGVSTYDIDDYFDNELIK*
Ga0105674_1109772	Ga0105674_11097722	F105371	KVVKTFDNMSDANVVLRKLIAIRNDDSNWEVGEYTMGNNIEIGLIAAFKIEELLEKVVDVFDSFSIWVDGNNVRKVWSKGF*
Ga0105674_1123115	Ga0105674_11231154	F002425	MTDEEIKGFMEYFKGEFPNPEHHPLKVMWLMRWYKSIVLRNRE*
Ga0105674_1128460	Ga0105674_11284602	F042933	MVVERDINGVEFAYENKDVLAFEPDPNQREPNEVDEPTE*
Ga0105674_1131077	Ga0105674_11310771	F045997	MAEEELVDFGFSAVTADEYDRDNTDGENAGSGGSASPDALASMDAKIEQIMAAISSKPDDIADDFGFSQEDKDKQDETLAGIELKIDKILSLEQDEERAQTTADILAQLNDATGESRTSSKKAGEVVGKQDEIMKFLESMSPKIDKILKLESLESLLEGTSGKLDDLTASHPQSVTAEPPDLTPIMEKLEWVDKDVQKILKMEQLEAVQSLQKSSADMSSIVKEIEERKKDLNKTYKARMLAVEKLILPLIANLQKDGDTKEYI
Ga0105674_1136192	Ga0105674_11361923	F015350	MIKWLIIIVMAILVGWQYDAALQKNIHEVESRIKKFESVDLFNILEQISLAHIRIKKSVDILNKKQIEVQALEKEIKEKFAIQERELRTQVKTIETKLQKLRSELNDGLTKIERNVSTIDSVVDEKFKTLWMMINNK*
Ga0105674_1142064	Ga0105674_11420643	F004642	MNKPAFSETVPNELKELGYVPPIIKSYDNNGINVWLDKRGKIYGVPFWQFTMDGIQWMVLDERHGSASQFYSHYKLAKGHVICTGLGFGTREQWLASKPEVTKITVLEKFKEVIDYHKDIGTKWHDKIEIINCDANDYKGSCDFLSIDHYEYDDVLRILDSIKTVCNNITCESAWFWMLEPWIRLGYITDNTENPTIIPKKIWYGGNKNEIQENYSKIKTYFEHVNLPNLNKEQLTKFIEMY*
Ga0105674_1177215	Ga0105674_11772151	F043455	MYSAINHIMKQMNMNMRKETVEEFLRRGKTITKIPQVLDTIGSIWNQQGIGADKDRHDHKKFGIRLMDWKSMQPDIRFDTEDDDRKYWNQLNKRCDKLIKKIKKEQKKT*
Ga0105674_1207834	Ga0105674_12078342	F013420	MTDTTDIRQVRIPTVAVGLMLSVAVIVGTVTWSSARLVARIDHLEATVSSIEQTMDMNAYARSTDLEDLQITVNYLSVALDDLGDMIDDDWRVED*
Ga0105674_1211247	Ga0105674_12112472	F022907	MGEDNTLNVRQSVGDVGGDFTKSITIESGGDERVGDIEAVIDLTYNIFQYIPELLFVSIYGLAMYAGVLLLHKHIKGNG*
Ga0105674_1214857	Ga0105674_12148571	F060432	LLEAHNNLRTALSTVADCHDLWLSDIRNLEKLECNLHRIFKFVPKQDEGGHGMYYANWVLDEDDDDLHLLQPVIVFSCGGD*
Ga0105674_1222778	Ga0105674_12227782	F036294	MDKGFSDEAILGVKLIANEDAVTYLRIKLSESDKEVGAEGWNM*
Ga0105674_1226640	Ga0105674_12266402	F056171	MRKFTHKAIIAITYATAIGLTTMAISGIGFLIFGLITGKLNADFGIYR*
Ga0105674_1226640	Ga0105674_12266403	F065667	MKRINYYDHLHKLANERYNTSYIAGLTSEQRYELISDTHRAMRDRQLLINANK*
Ga0105674_1228081	Ga0105674_12280811	F002745	MKTFKQYLREFAQQSTSDYVFNTGSVNSSSLKIPISTSMFKRIWPDTIRATVFHTTDLAGLVRLGKLEGGKKTIAAFFSMMSRYMETGVATSGDVHVVAEMDADVLISARDDIWSIVDKTGRRWVEMSWFANAQRFGTGPAFGKVENRLNTLIANLVKKHLPKGKEVEQTRFFAQDSGAIFDIWGNMKRHLKGDGKAISLVIKDYFDGVEKVLKKNKEVMGDIFYGYAKSKRMTDNSWDEQIVNNIKVKKVHVISEKDDQEGTEWRRDEIKAIGNWPVTIWDVAIDLEIYTREVVKKEQPPRNIAY*
Ga0105674_1231447	Ga0105674_12314472	F102611	FLVSIRTNIVQIMFYKSSYQLTIAKKSSKIGVNLTTKQRK*
Ga0105674_1235295	Ga0105674_12352952	F014551	MRDMFKFQYNPAVHEGQVNRAGHVFDYLGVIVDHFRNTTEGETFSGVTVELHDNEGPTGQTRRFRFDRMVGAENIINKAQAMHGGRI*
Ga0105674_1236419	Ga0105674_12364191	F003706	LIQKVDSLEVMVREQNDRLDRLDQQLERTRGIGIGVVLATVGLSGIGGSLFTRWLSSGG*
Ga0105674_1253544	Ga0105674_12535441	F063767	CKLLKDDNTGCSLGDDRPLFCKLYPLVENKSNRMVINNWAYLHCPKPDNYELDKVVDGKYHYKLKKKHKNKRNELILDDKIENVVKQIWLQAKDSIIQKYGQEYYEKIKTEMKQTIKHEFF*
Ga0105674_1263900	Ga0105674_12639002	F016005	MEGNLPDNRVDIFYIADRLVGILETDNKHLRAELEEFKQEIFHNIGANAVFERNI*
Ga0105674_1265920	Ga0105674_12659203	F013570	LEKIKKKREELMTNYNSLVDKRIELEKRLEITNTDILTMRGAILLCNEFVEEEEKPEPKPLFPEKEVVVNDLDKEKDGGQKNK*
Ga0105674_1270976	Ga0105674_12709762	F029273	MLEQLENLLTEAPKRTSRTRVTRKTKIKRSTGQMASAEARKRNDPLYKRMIYYRELYYKYRAAVHKKYAPRVRSRARR*
Ga0105674_1288749	Ga0105674_12887491	F095321	KNQNWKIRIVANNKEMISPGEYKKHEILPKLFEMYRHYYKLNTKGKR*
Ga0105674_1291310	Ga0105674_12913101	F070553	MLDNFDAVAKLIEMNKQFRKIIKELVANGFDIKQTQKGFRIAPPKSCTNQGVYFTHGGEACLHPIRRDFVKEYGYRINFKK*
Ga0105674_1291310	Ga0105674_12913102	F055187	MRIVNGNGIKSPADLVGLKPDKDDKLLRHEAIERMKRHMERKLKAAQEKARLAQPYVRDADAPSFDGRWLG*
Ga0105674_1291824	Ga0105674_12918242	F072876	MEMSKQPYQNVVDMPINRFYNYLKWKTDLEEDKKKAIEEQIAQG*
Ga0105674_1292562	Ga0105674_12925622	F005546	LIENVGSAVGTLTISAGDETLPLTGKGKYGLRPAQLKFGNDEQFTLTTDSNVKSYLLVTEFRRN*
Ga0105674_1295416	Ga0105674_12954162	F002274	MAKTEVGYPEGGKKYKGPPDNVGQDPRADIVTNDFTPGQKIDKGTKVKVAGTRRMLASKNKTATWF*
Ga0105674_1298444	Ga0105674_12984442	F010477	MKLRYAIFVPYLIFIGIMGGNVLVDAIVIGLALAMYDFFFGNGGGGRPA*
Ga0105674_1299244	Ga0105674_12992444	F016978	MIKPNTEPFAKFKVGDKVRGRDALGIVDGQPGIVREVHTSYPTPEDYEDLTNPGIVYSVQSMKGNFLLQDYQMDLLGKQQLFNFM*
Ga0105674_1301474	Ga0105674_13014742	F078228	MADKFTMSLPNSMKDALNIEMKKRKCDTFQETIRSILSEYFRNQGRV*
Ga0105674_1301565	Ga0105674_13015652	F026589	MTISKDDLLKRKEEIVTDYNKLVEEIGKGEQNLKVMRTNLNAVSGALQQVDLFIKQIEDDGDPMPAEKQQALDMATS*
Ga0105674_1302394	Ga0105674_13023941	F001066	MGKDEGIFKIKPIGKGGQVVIDKRKTVSPFNSAKHLKTANIPALCDQCVYRSIEDGGNGKCPKYEAGSVCVIREDFIKFINELDTRKPEDLKEMLDMLAKLSFENVLMALTQSKMDGNIPDRNTKSEINSLLNIVKSINDLNSKITMTEEKRYTKEGDIENIFRQIKAQKSE*
Ga0105674_1303817	Ga0105674_13038171	F000060	MAQKFNTEFNYRYQVIGDTPWERIKTLKGFLEGRLRAAALEEVGKLKHQAKLSKLNYLKNGGEGLEHEILELKAEIIELESHEETSNKIRLLTKDEIKILKKLLKELYVLAEPTRIKGYTDEEMFEANAANEFTVNMGREIQSEMIANGRPSAARIRNAMSNHHTWNALKQIGLIPKATKILEGNVNPQLKIELKGVEDEPV*
Ga0105674_1304045	Ga0105674_13040451	F002380	MIASLLGIVVGFLMAMLGIIFAVHADTHNTVGILIAFGGIVSMLYFLP
Ga0105674_1309316	Ga0105674_13093161	F070554	MATRKTGGLDPQIVREIEKQTQKQQKIDNKRTKQKLIFWSLIILGTAMAVGVAVVSSDLAEW*
Ga0105674_1313062	Ga0105674_13130622	F091343	MPGLLNLGAAFVAERGGNIDKDIADKFGEKAVVFMSITASPEDIQRMDRDKEQLKARSGCGVVFQPMKEPIVPDGYQDDLYGFDIVTDDAAGLVAELTALISDFGMMTIGHTGERRFAPGPRHHVQAGQKYVLMLPLEFDHIGFHRELNAIVKKYNGRLVTPLRQVPGLLWWW*
Ga0105674_1339193	Ga0105674_13391932	F003410	MIIATGTILTFPTDKRVEPNCFDQGHSILQKISTYHGPGPNQGWVLNDSNIEVGGWYCKPILNDDVGE*
Ga0105674_1350868	Ga0105674_13508681	F005608	MKTATIEVLEEGELIFGSPTVGKYFVRRYEDETEMGGGFFKTKKEAETHAKEYKKSE*
Ga0105674_1350868	Ga0105674_13508682	F015491	VKQTKRQRKTKSPARPQVTPRKWSKKSVRIFDKQFDRFLYDELYVPTKKAWGEEIMKYERDMFGDSK*
Ga0105674_1350982	Ga0105674_13509822	F105864	PVISMTSITKIIPEPGIVVSNLNIVSGRYFCGIRLLTSSKKNLMTMTLRARGIQKRRPEIK*
Ga0105674_1359582	Ga0105674_13595822	F066454	KLLMLLLRQVFMSIRFDVLILINSGVTDRNEIMARLGINIMSVSNCVRFLVKEGWVEYSRESISVVDGDSYRITQVGIDKIKSLTVDDYRKSPQRKIPAYEVMRSHLGVGSDVTRSELINLWNELTDYYLPYEGDKEFTGRRGLSSL*
Ga0105674_1360201	Ga0105674_13602011	F015479	MKILIILGTGAILSFPMDKSVIPDCFSQGYSIMQKISTYQDTGNRDQGWYLNGTKIHVTGFYCQ*
Ga0105674_1360201	Ga0105674_13602012	F002453	MAPIEYPTLYDSWYKCSRDAHVESIKLMSRMGYKNVNDYKVGTNYHCKAVRTY*
Ga0105674_1361567	Ga0105674_13615671	F031503	EMMELFKATADINTEEGMAAYRAFAAAITTPILQKVELESIMRQLFAVERLGPGAQAVYPVAEDFEIPVWVLPGLGYVAQNFIEGIGEEVYVPTFAIDASADWRLTYARDSRIDIASRAAARVAKDLANYEEECGWRVIMPAATSAFSGKGLLGSRPAPIYEISNASTGAGYLSKELINRMMVGFKRIGRQLTDIYIAPEDAADIREWTD
Ga0105674_1366298	Ga0105674_13662982	F011529	IMRWAQRKTIYNLDGIRLRSARLWLDEKGFHPFLDQVELTRPDMQKSMSCKYNELPKEAWDLMDKYDSEKARKSKYAT*
Ga0105674_1389699	Ga0105674_13896992	F003285	MPEQESIHQLQTEIQTLKRKDEFRTKELDALMNKLSDTSSKLNALLENIGRLLAGQDLHKTSDNEVRDELKILHTRIGDLHDKCTEMIDKTETRVSSDISLLYKKVDSLEKWRWITIGIATAIAWLLANIIPKFLNN*
Ga0105674_1395901	Ga0105674_13959012	F099327	MAQEGYIQGAAGEEISLLIDGIKIMALQNLSWKASQAKSVIRGAGYKKPHAMGRGPKDYEVDFEVKELNKAILEEAINSPRSSETQIKTFTVGGQTFSDLLDLRNCTILIVYPPRNNAQRIIRFLGFEFTDVEGGFSVDDESVGRKLSGIAMDAGGLV*
Ga0105674_1400857	Ga0105674_14008572	F023718	MKEKIDLSLNRSLEELISSYWEAENVGIESSAFYTLENYLADMNAI*
Ga0105674_1403615	Ga0105674_14036151	F017398	DGKKLALVIADYIDGVNAILKKHKKDIQGAVHGYYVRRGTIAVKHASGRMVGGDSEIGEWSAWDEQVVDKIKIEKVHTYNTARRSGDWVKTAIIPNGGKIPHKHWKSAAELSTYISQVADAEVRTFAGWARKK*
Ga0105674_1403766	Ga0105674_14037662	F006321	MFSLVDAVGKAKKDGEMSWSDARYFIDPVKKLFEAVDDIEEVLPEIEDLSGEEYDQLVEYVRGKWDYDEDNLDWVVDTAIEAGRGVLTLINMQKS*
Ga0105674_1418028	Ga0105674_14180281	F013815	MYFIQYEKTLPPWYTGTDKIQAEASEDAVKEFYKHHDSFEERIWSVREVQDTYQK*
Ga0105674_1422069	Ga0105674_14220692	F055854	MMTIEEKREKVNKRMAALRAKRKPPKLANVHNTILALPDDDTLSYVNVRKWITTQEGIAKAAGLVERSRSSEIPQRQKDKAMRTRLGAQAYIRAIKRYINSGDWSTMYYGEFEDLLMQWVTVAPVGKKI*
Ga0105674_1446212	Ga0105674_14462122	F031713	MANNNLTIDLKARKDIDGQTFYVGKLKGPMMIDCTKGVTFLVFVADENEEQLQIALMEKRDD*
Ga0105674_1465631	Ga0105674_14656312	F005685	MKKFNEYSSFEDKILGTLKRGPCDRMTLSHKLKEDIMPVSSMLEHLKVYDKVEMYKEKWQIKRTKKN*
Ga0105674_1465631	Ga0105674_14656313	F032311	KPAFKFPSPNSDMMIHVFLRPMAGKKGMMAFNYQLEDK*