NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F090849

Metagenome Family F090849

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F090849
Family Type Metagenome
Number of Sequences 108
Average Sequence Length 50 residues
Representative Sequence MAASNTVPDNLNYLSNISFRLTMQDAPNLTWFCQAVNVPGVSIEGID
Number of Associated Samples 90
Number of Associated Scaffolds 108

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 87.96 %
% of genes near scaffold ends (potentially truncated) 98.15 %
% of genes from short scaffolds (< 2000 bps) 93.52 %
Associated GOLD sequencing projects 86
AlphaFold2 3D model prediction Yes
3D model pTM-score0.34

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (80.556 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(31.482 % of family members)
Environment Ontology (ENVO) Unclassified
(85.185 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(87.963 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 32.00%    β-sheet: 0.00%    Coil/Unstructured: 68.00%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.34
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 108 Family Scaffolds
PF07068Gp23 23.15
PF10584Proteasome_A_N 0.93
PF03420Peptidase_S77 0.93
PF00308Bac_DnaA 0.93

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 108 Family Scaffolds
COG0593Chromosomal replication initiation ATPase DnaAReplication, recombination and repair [L] 0.93
COG1484DNA replication protein DnaCReplication, recombination and repair [L] 0.93


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A80.56 %
All OrganismsrootAll Organisms19.44 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2236876008|none_p167854Not Available526Open in IMG/M
3300000173|LPfeb10P16500mDRAFT_c1012347Not Available810Open in IMG/M
3300000248|LPfeb09P12500mDRAFT_1028478Not Available622Open in IMG/M
3300004273|Ga0066608_1130619Not Available624Open in IMG/M
3300005400|Ga0066867_10260138Not Available627Open in IMG/M
3300005520|Ga0066864_10246061Not Available506Open in IMG/M
3300005605|Ga0066850_10039447All Organisms → Viruses → Predicted Viral1909Open in IMG/M
3300005605|Ga0066850_10197410Not Available729Open in IMG/M
3300006011|Ga0066373_10080737Not Available911Open in IMG/M
3300006077|Ga0081594_1115676All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales1217Open in IMG/M
3300006093|Ga0082019_1065516Not Available637Open in IMG/M
3300006166|Ga0066836_10538907Not Available706Open in IMG/M
3300006190|Ga0075446_10023984All Organisms → Viruses → Predicted Viral2020Open in IMG/M
3300006303|Ga0068490_1205303Not Available999Open in IMG/M
3300006303|Ga0068490_1205304Not Available804Open in IMG/M
3300006308|Ga0068470_1655522Not Available676Open in IMG/M
3300006308|Ga0068470_1701877Not Available631Open in IMG/M
3300006313|Ga0068472_10583962All Organisms → Viruses → Predicted Viral1569Open in IMG/M
3300006313|Ga0068472_10699245Not Available816Open in IMG/M
3300006313|Ga0068472_10742429Not Available548Open in IMG/M
3300006316|Ga0068473_1179844All Organisms → Viruses → Predicted Viral1368Open in IMG/M
3300006324|Ga0068476_1440738Not Available555Open in IMG/M
3300006326|Ga0068477_1228143All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae1222Open in IMG/M
3300006326|Ga0068477_1504192Not Available693Open in IMG/M
3300006326|Ga0068477_1520445Not Available520Open in IMG/M
3300006330|Ga0068483_1289515Not Available538Open in IMG/M
3300006331|Ga0068488_1309198Not Available621Open in IMG/M
3300006331|Ga0068488_1345165Not Available1255Open in IMG/M
3300006331|Ga0068488_1657272Not Available571Open in IMG/M
3300006335|Ga0068480_1496519Not Available582Open in IMG/M
3300006336|Ga0068502_1465396Not Available605Open in IMG/M
3300006338|Ga0068482_1335505All Organisms → Viruses → Predicted Viral1555Open in IMG/M
3300006340|Ga0068503_10306936All Organisms → Viruses → Predicted Viral3217Open in IMG/M
3300006340|Ga0068503_10440767Not Available645Open in IMG/M
3300006340|Ga0068503_10604863Not Available945Open in IMG/M
3300006340|Ga0068503_10808864Not Available635Open in IMG/M
3300006340|Ga0068503_10833329Not Available1093Open in IMG/M
3300006341|Ga0068493_10193549All Organisms → Viruses → Predicted Viral1815Open in IMG/M
3300006344|Ga0099695_1138819Not Available696Open in IMG/M
3300006346|Ga0099696_1135071Not Available687Open in IMG/M
3300006414|Ga0099957_1212391Not Available652Open in IMG/M
3300006567|Ga0099958_1088854Not Available1057Open in IMG/M
3300006567|Ga0099958_1355042Not Available610Open in IMG/M
3300006738|Ga0098035_1209789Not Available648Open in IMG/M
3300006750|Ga0098058_1141474Not Available638Open in IMG/M
3300006789|Ga0098054_1214840Not Available699Open in IMG/M
3300006793|Ga0098055_1018515All Organisms → Viruses → Predicted Viral3006Open in IMG/M
3300006900|Ga0066376_10316637Not Available907Open in IMG/M
3300006900|Ga0066376_10523866Not Available666Open in IMG/M
3300006902|Ga0066372_10954708Not Available523Open in IMG/M
3300006990|Ga0098046_1122979Not Available567Open in IMG/M
3300007160|Ga0099959_1095356All Organisms → Viruses → Predicted Viral1843Open in IMG/M
3300007160|Ga0099959_1333281Not Available509Open in IMG/M
3300007776|Ga0105674_1060926Not Available1099Open in IMG/M
3300008738|Ga0115660_1031675All Organisms → Viruses → Predicted Viral3210Open in IMG/M
3300008952|Ga0115651_1185881Not Available1412Open in IMG/M
3300009370|Ga0118716_1162195Not Available1097Open in IMG/M
3300009418|Ga0114908_1135835Not Available798Open in IMG/M
3300009481|Ga0114932_10161653All Organisms → Viruses → Predicted Viral1373Open in IMG/M
3300009595|Ga0105214_102339Not Available983Open in IMG/M
3300009612|Ga0105217_108796Not Available778Open in IMG/M
3300009619|Ga0105236_1038209Not Available611Open in IMG/M
3300009706|Ga0115002_10886031Not Available618Open in IMG/M
3300009790|Ga0115012_10386608All Organisms → Viruses → Predicted Viral1072Open in IMG/M
3300010151|Ga0098061_1331226Not Available520Open in IMG/M
3300010883|Ga0133547_10503828Not Available2445Open in IMG/M
3300012920|Ga0160423_10379364Not Available968Open in IMG/M
3300012952|Ga0163180_10488277Not Available918Open in IMG/M
3300012954|Ga0163111_11532639Not Available660Open in IMG/M
3300017703|Ga0181367_1032508Not Available936Open in IMG/M
3300017721|Ga0181373_1102422Not Available504Open in IMG/M
3300017731|Ga0181416_1149748Not Available562Open in IMG/M
3300017773|Ga0181386_1206719Not Available589Open in IMG/M
3300018039|Ga0181579_10681012Not Available525Open in IMG/M
3300020383|Ga0211646_10181318Not Available753Open in IMG/M
3300020405|Ga0211496_10060252All Organisms → cellular organisms → Bacteria → Proteobacteria1365Open in IMG/M
3300021347|Ga0213862_10183971Not Available735Open in IMG/M
3300021356|Ga0213858_10120585All Organisms → Viruses → Predicted Viral1281Open in IMG/M
3300021442|Ga0206685_10146923Not Available787Open in IMG/M
3300021442|Ga0206685_10172399Not Available725Open in IMG/M
3300021791|Ga0226832_10119417Not Available979Open in IMG/M
3300021978|Ga0232646_1230207Not Available628Open in IMG/M
3300022227|Ga0187827_10487309Not Available743Open in IMG/M
(restricted) 3300024336|Ga0233447_1107075Not Available810Open in IMG/M
3300025072|Ga0208920_1085919Not Available590Open in IMG/M
3300025084|Ga0208298_1013213All Organisms → Viruses → Predicted Viral1967Open in IMG/M
3300025109|Ga0208553_1046757Not Available1079Open in IMG/M
3300025114|Ga0208433_1018098All Organisms → Viruses → Predicted Viral2022Open in IMG/M
3300025151|Ga0209645_1218639Not Available550Open in IMG/M
3300025249|Ga0208570_1008759All Organisms → Viruses → Predicted Viral1795Open in IMG/M
3300026082|Ga0208750_1065824Not Available738Open in IMG/M
3300026091|Ga0207962_1051704Not Available852Open in IMG/M
3300026182|Ga0208275_1066519Not Available705Open in IMG/M
3300026209|Ga0207989_1114791Not Available657Open in IMG/M
3300026257|Ga0208407_1095994Not Available942Open in IMG/M
3300027685|Ga0209554_1091235Not Available1012Open in IMG/M
3300027847|Ga0209402_10503988Not Available705Open in IMG/M
3300028487|Ga0257109_1069337Not Available1103Open in IMG/M
3300028487|Ga0257109_1073521Not Available1064Open in IMG/M
3300028535|Ga0257111_1193496Not Available608Open in IMG/M
3300031510|Ga0308010_1273824Not Available586Open in IMG/M
3300031598|Ga0308019_10077090All Organisms → Viruses → Predicted Viral1383Open in IMG/M
3300031599|Ga0308007_10128789Not Available915Open in IMG/M
3300031675|Ga0302122_10013888All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae4246Open in IMG/M
3300031774|Ga0315331_10578790Not Available806Open in IMG/M
3300031802|Ga0310123_10468373Not Available799Open in IMG/M
3300032360|Ga0315334_11117057Not Available681Open in IMG/M
3300034695|Ga0372840_210207Not Available577Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine31.48%
MarineEnvironmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine23.15%
MarineEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Marine8.33%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine3.70%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater3.70%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine3.70%
Marine OceanicEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic2.78%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine2.78%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine2.78%
Deep OceanEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean1.85%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater1.85%
Surface SeawaterEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater1.85%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater1.85%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater1.85%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater0.93%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater0.93%
Marine EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine Estuarine0.93%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh0.93%
Hydrothermal Vent FluidsEnvironmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids0.93%
Diffuse Vent Fluid, Hydrothermal VentsEnvironmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Vent Fluid, Hydrothermal Vents0.93%
Diffuse Hydrothermal FluidEnvironmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Fluid0.93%
Hydrothermal Vent FluidsEnvironmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Fluids0.93%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface0.93%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
2236876008Marine microbial communities from Columbia River, CM, sample from Cape Meares, GS311-3LG-Deep1200EnvironmentalOpen in IMG/M
3300000173Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - February 2010 P16 500mEnvironmentalOpen in IMG/M
3300000248Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - February 2009 P12 500mEnvironmentalOpen in IMG/M
3300004273Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_135mEnvironmentalOpen in IMG/M
3300005400Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV261EnvironmentalOpen in IMG/M
3300005520Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F10-02SV251EnvironmentalOpen in IMG/M
3300005605Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV67EnvironmentalOpen in IMG/M
3300006011Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_O2min_ad_340m_LVEnvironmentalOpen in IMG/M
3300006077Microbial communities in diffuse hydrothermal fluids of Manus Basin, Bismarck Sea ? fluid BEnvironmentalOpen in IMG/M
3300006093Marine microbial communities from the Eastern Tropical South Pacific Oxygen Minumum Zone, cruise NBP1315, 2013 - sample NBP189EnvironmentalOpen in IMG/M
3300006166Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV91EnvironmentalOpen in IMG/M
3300006190Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG058-DNAEnvironmentalOpen in IMG/M
3300006303Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT234_1_1000mEnvironmentalOpen in IMG/M
3300006308Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_2_0500mEnvironmentalOpen in IMG/M
3300006313Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_2_0770mEnvironmentalOpen in IMG/M
3300006316Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_1000mEnvironmentalOpen in IMG/M
3300006324Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_1_0500mEnvironmentalOpen in IMG/M
3300006326Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_1_0770mEnvironmentalOpen in IMG/M
3300006330Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_1_1000mEnvironmentalOpen in IMG/M
3300006331Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT233_1_1000mEnvironmentalOpen in IMG/M
3300006335Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_2_0500mEnvironmentalOpen in IMG/M
3300006336Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0500mEnvironmentalOpen in IMG/M
3300006338Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_1_0770mEnvironmentalOpen in IMG/M
3300006340Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770mEnvironmentalOpen in IMG/M
3300006341Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT236_2_0770mEnvironmentalOpen in IMG/M
3300006344Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_0500mEnvironmentalOpen in IMG/M
3300006346Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_0770mEnvironmentalOpen in IMG/M
3300006414Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT225_1_0500mEnvironmentalOpen in IMG/M
3300006567Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT225_1_0770mEnvironmentalOpen in IMG/M
3300006738Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaGEnvironmentalOpen in IMG/M
3300006750Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaGEnvironmentalOpen in IMG/M
3300006789Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaGEnvironmentalOpen in IMG/M
3300006793Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaGEnvironmentalOpen in IMG/M
3300006900Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_Bottom_ad_5009_LV_AEnvironmentalOpen in IMG/M
3300006902Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_250_ad_251m_LV_AEnvironmentalOpen in IMG/M
3300006990Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaGEnvironmentalOpen in IMG/M
3300007160Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT225_1_1000mEnvironmentalOpen in IMG/M
3300007776Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS915_Marker113_DNA CLC_assemblyEnvironmentalOpen in IMG/M
3300008738Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 200m, 2.7-0.2um, replicate bEnvironmentalOpen in IMG/M
3300008952Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 250-2.7umEnvironmentalOpen in IMG/M
3300009370Combined Assembly of Gp0127930, Gp0127931EnvironmentalOpen in IMG/M
3300009418Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s17EnvironmentalOpen in IMG/M
3300009481Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaGEnvironmentalOpen in IMG/M
3300009595Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3635_2500EnvironmentalOpen in IMG/M
3300009612Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3651_4511EnvironmentalOpen in IMG/M
3300009619Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3827_250EnvironmentalOpen in IMG/M
3300009706Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_86EnvironmentalOpen in IMG/M
3300009790Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT10 MetagenomeEnvironmentalOpen in IMG/M
3300010151Marine viral communities from the Subarctic Pacific Ocean - 22_ETSP_OMZ_AT15343 metaGEnvironmentalOpen in IMG/M
3300010883western Arctic Ocean co-assemblyEnvironmentalOpen in IMG/M
3300012920Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaGEnvironmentalOpen in IMG/M
3300012952Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 4 MetagenomeEnvironmentalOpen in IMG/M
3300012954Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St18 metaGEnvironmentalOpen in IMG/M
3300017703Marine viral communities from the Subarctic Pacific Ocean - ?Lowphox_02 viral metaGEnvironmentalOpen in IMG/M
3300017721Marine viral communities from the Subarctic Pacific Ocean - Lowphox_09 viral metaGEnvironmentalOpen in IMG/M
3300017731Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 39 SPOT_SRF_2013-01-16EnvironmentalOpen in IMG/M
3300017773Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 9 SPOT_SRF_2010-03-24EnvironmentalOpen in IMG/M
3300018039Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071402CT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300020383Marine microbial communities from Tara Oceans - TARA_B100000929 (ERX556043-ERR598971)EnvironmentalOpen in IMG/M
3300020405Marine microbial communities from Tara Oceans - TARA_B000000532 (ERX556129-ERR599012)EnvironmentalOpen in IMG/M
3300021347Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO266EnvironmentalOpen in IMG/M
3300021356Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO245EnvironmentalOpen in IMG/M
3300021442Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 200m 12015EnvironmentalOpen in IMG/M
3300021791Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Daikoku_FS921 150_kmerEnvironmentalOpen in IMG/M
3300021978Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Perseverance_CTD_V16A_01_btl17 _150kmerEnvironmentalOpen in IMG/M
3300022227Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014_SV_150_PacBio MetaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300024336 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_135_MGEnvironmentalOpen in IMG/M
3300025072Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025084Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025109Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025114Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025151Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)EnvironmentalOpen in IMG/M
3300025249Marine microbial communities from the Deep Indian Ocean - MP1202 (SPAdes)EnvironmentalOpen in IMG/M
3300026082Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_O2min_ad_340m_LV (SPAdes)EnvironmentalOpen in IMG/M
3300026091Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_AAIW_ad_750m_LV_A (SPAdes)EnvironmentalOpen in IMG/M
3300026182Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF49B (SPAdes)EnvironmentalOpen in IMG/M
3300026209Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV65 (SPAdes)EnvironmentalOpen in IMG/M
3300026257Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV69 (SPAdes)EnvironmentalOpen in IMG/M
3300027685Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - Bottom_A/KNORR_S2/LV (SPAdes)EnvironmentalOpen in IMG/M
3300027847Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126 (SPAdes)EnvironmentalOpen in IMG/M
3300028487Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_2000mEnvironmentalOpen in IMG/M
3300028535Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_500mEnvironmentalOpen in IMG/M
3300031510Marine microbial communities from water near the shore, Antarctic Ocean - #129EnvironmentalOpen in IMG/M
3300031598Marine microbial communities from water near the shore, Antarctic Ocean - #284EnvironmentalOpen in IMG/M
3300031599Marine microbial communities from water near the shore, Antarctic Ocean - #71EnvironmentalOpen in IMG/M
3300031675Marine microbial communities from Western Arctic Ocean, Canada - CB21_SCMEnvironmentalOpen in IMG/M
3300031774Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 34915EnvironmentalOpen in IMG/M
3300031802Marine microbial communities from Western Arctic Ocean, Canada - CB6_AW_1057EnvironmentalOpen in IMG/M
3300032360Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 34915EnvironmentalOpen in IMG/M
3300034695Seawater microbial communities from the Northeast subarctic Pacific Ocean - P26_June_2012_500mEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
none_16785422236876008Marine EstuarineMAAANIVPDNLNYLSNISFRLTMLDAPNLTWFCQATNVPGVSIEGIDVFTPYVTIPYAGNKVSF
LPfeb10P16500mDRAFT_101234723300000173MarineMAASDTVPDNLNYLSNISFRLTMQDAPNITWFCQAVNVPGVSIEGIDITTP
LPfeb09P12500mDRAFT_102847823300000248MarineMAASNVVPDNLNYLSNISFRLTMQDAPNITWFCQA
Ga0066608_113061923300004273MarineMSASNKVPDNLNYLSNISFRLSMEDAPHLTWFCQSVNVPGVSIEAIDL
Ga0066867_1026013823300005400MarineMSASNKIPDNLNYLSNISFRLTMEDAPHMTWFCQAANVPGVSIDAIE
Ga0066864_1024606113300005520MarineMSASNKIPDNLNYLSNISFRLTMEDAPHMTWFCQAANVPGVSIDAIEVYNPNATVPLAGSKVNFEELSVRF
Ga0066850_1003944713300005605MarineMAAGSTVPDNLNYLSNISFRLTMQDAPNLTWFCQAINVPGVSIEGIDVFTPYVTMPFAG
Ga0066850_1019741023300005605MarineMAASNKVPDNLNYLSNISFRLMMEDAPHLTWFCQSVNVPGVS
Ga0066373_1008073713300006011MarineMAAGSTVPDNLNYLSNISFRLTMQDAPNLTWFCQAINVPGVSIEGIDVFTPYVTMPFAGNKVNFEELSVRF
Ga0081594_111567613300006077Diffuse Hydrothermal FluidMAASNVVPDNLNYLSNISFRLTMQDAPNLTWFCQATNVPGVSIEGIDVFTPYVTIPYAGNKV
Ga0082019_106551623300006093MarineMSASNKIPDNLNYLSNISFRLTMEDAPHMTWFCQAANVPGVSIDAIEVYNPNATVPLRHEARP*
Ga0066836_1053890723300006166MarineMAASNKTPDNLNYLSNISFRLTMEDAPNLTWFCQAV
Ga0075446_1002398413300006190MarineMAASNKVPDNLNYLSNISFRLTMEDAPHLTWFCQSANVPGVSIEAIEMPTPFATIPYAG
Ga0068490_120530313300006303MarineMAAGSTVPDNLNYLSNISFRLTMQDAPNLTWFCQAVNVPGVSIEGIDV
Ga0068490_120530413300006303MarineMAASNVVPDNLNYLSNISFRLTMQDAPNLTWFCQAVNVPGVSI
Ga0068470_165552213300006308MarineMAASNTVPDNLNYLSKISFRLTMQDAPNLTWFCQAVNVPGV
Ga0068470_170187723300006308MarineMAASNVVPDNLNYLSNISFRLTMQDAPSLTWFCQAANVPGVSLEAIDVFTPYVTVPYSG
Ga0068472_1058396213300006313MarineMAAANKVPDNLNYLSNISFRLTMKDAPNLTWFCQAVNVPGVSIEGIDV
Ga0068472_1069924513300006313MarineMAASNVVPDNLNYLSNISFRLTMQDAPNITWFCQAANVPGVSIEGIDVMTPHA
Ga0068472_1074242913300006313MarineMAASNKVPDNLNYLSNISFRLTMQDAPSLTWFCQAASVPGISLEAIDVPTPYVTIPYSG
Ga0068473_117984413300006316MarineMAAANKVPDNLNYLSGISFRLTMLDAPNLTWFCQATIVPGVSIEGIDV
Ga0068476_144073813300006324MarineMAASDTVPDNLNYLSNISFRLTMQDAPNLTWFCQA
Ga0068477_122814333300006326MarineMAASNIVPDNLNYLSNISFRLTMQDAPNLTWFCQSANVPGVSIDAIDFQTPYLN
Ga0068477_150419223300006326MarineMAAANKVPDNLNYLSNISFRLTIEDAPNITWFCQSA
Ga0068477_152044513300006326MarineMAASNKVPDNLNYLSNISFRLTMQDAPSLTWFCQAATVPGVSIE
Ga0068483_128951513300006330MarineMAAANKVPDNLNYLSNISFRLTIESAPNITWFCQAVNVPGVSIEGID
Ga0068488_130919813300006331MarineMAASNIIPDNLNYLSNISFRLTMQDAPNLTWFCQAVN
Ga0068488_134516533300006331MarineMAASNIVPDNLNYLSKISFRLTMQDAPSLTWFCQA
Ga0068488_165727223300006331MarineMAAANKVPDNLNYLSNISFRLTMLDAPNLTWFCQAVNVPGVSIEGIDV
Ga0068480_149651913300006335MarineMAASNIVPDNLNYLSNISFRLTMQDAPNLTWFCQAASVPGVSLE
Ga0068502_146539623300006336MarineMAAGNKVPDNLNYLSNISFRLTMLDAPNLTWFCQATNVPGVSIEGIDVFT
Ga0068482_133550513300006338MarineMAAANKVPENLNYLSNISFRLTMQDAPSLTWFCQAATVPGVSIEGIDVMTPHATIPFA
Ga0068503_1030693613300006340MarineMAAANIVPDNLNYLSNISFRLTMQDAPNLTWFCQATNVPGVSIEGIDVFTPYVTIPYAGNKVSFEELS
Ga0068503_1044076713300006340MarineMAAANIVPDNINYLSNISFRLTMQDAPNLTWFCQSANVPGVSIDAIDFQT
Ga0068503_1060486313300006340MarineMAASNIVPDNLNYLSNISFRLTMQDAPSLTWFCQAAS
Ga0068503_1080886423300006340MarineMAASNKVPDNLNYLSNISFRLTMQDAPNLTWFCQSANVPGVSIDAIDFQ
Ga0068503_1083332913300006340MarineMAAANKVPDNLNYLSNISFRLTMQDAPSLTWFCQAANVPGVSIEGIDVFTPYVTIPYAGN
Ga0068493_1019354933300006341MarineMAAANKVPDNLNYLSNISFRLTIEDAPNITWFCQSANVPGVSIEGIDVMTPHATIPF
Ga0099695_113881913300006344MarineMAAANTVPDNLNYLSNISFRLTMQDAPNLTWFCQSANVPGVSIDAIDFQTPFLNIPQAG
Ga0099696_113507123300006346MarineMAASNTVPDNLNYLSNISFRLTMQDAPNITWFCQAVNVPG
Ga0099957_121239123300006414MarineMAASNTVPDNLNYLSNISFRLTMQDAPNLTWFCQAVNV
Ga0099958_108885413300006567MarineMAAANKVPDNLNYLSNISFRLTIEDAPNITWFCQSANVPGVSIEGIDVPTPH
Ga0099958_135504213300006567MarineMAAANKVPDNLNYLSGISFRLTMQDAPNLTWFCQSANVPGVSIEGIDVPTPHATIPFA
Ga0098035_120978913300006738MarineMSASNKIPDNLNYLSNISFRLTMEDAPHMTWFCQAANVPGVSIDAIEVYNPNA
Ga0098058_114147423300006750MarineMAASNKIPDNLNYLSNISFRLAMEDAPNLTWFCQAVNVPGVS
Ga0098054_121484013300006789MarineMAASNKIPDNINYLSNISFRLAMEDAPSLTWFCQAVNIPGVSIPNIEITNPYAT
Ga0098055_101851513300006793MarineMAASNKVPDNLNYLSNISFRLTMEDAPNLTWFCQAVNVPGVTIEGIDVFNPYAT
Ga0066376_1031663713300006900MarineMAAANKVPDNLNYLSNISFRLTMQDAPNLTWFCQAVNVPG
Ga0066376_1052386613300006900MarineMAASNKVPDNLNYLSNISFRLTMEDAPHLTWFCQSVNV
Ga0066372_1095470813300006902MarineMAAANKIPENLNYLSNISFRLTIEDAPNITWFCQSANVPGVSIEG
Ga0098046_112297913300006990MarineMAASNKVPDNLNYLSNISFRLTMEDSPNLTWFCQAASIPGVSID
Ga0099959_109535613300007160MarineMAAANKVPDNLNYLSGISFRLTMQDAPNLTWFCQSANVPGVSIEG
Ga0099959_133328123300007160MarineMAAANKIPDNLNYLSNISFRLTMQDAPSLTWFCQSVNVPGVSIDAIDVQT
Ga0105674_106092633300007776Diffuse Vent Fluid, Hydrothermal VentsMAADNKVPDNLNYLSNISFRLTMQDAPNITWFCQAANVPGVSIE
Ga0115660_103167543300008738MarineMATANKVPDNLNYLSNISFRLTMEDAPNITWFCQAAQVPGVSIESIDVF
Ga0115651_118588133300008952MarineMAAANKIPDNLNYLSNISFRLTMQDAPNLTWFCQAVNVPGVSLEAIDVPT
Ga0118716_116219533300009370MarineMAAANKVPDNLNYLSNISFRLTMEDAPNITWFCQAAQVPGVSIESIDVFNPHATLPIGGNKVSFE
Ga0114908_113583523300009418Deep OceanMAAANKIPENLNYLSNISFRLTMQDAPSMTWFCQAANVPGVSLEAID
Ga0114932_1016165333300009481Deep SubsurfaceMAAANKVPDNLNYLSNISFRLTMEDAPNLTWFCQAVNV
Ga0105214_10233913300009595Marine OceanicMAAANKIPDNLNYLSNISFRLTMQDAPNLTWFCQSVNV
Ga0105217_10879623300009612Marine OceanicMAAANQVPDNLNYLSNISFRLTMQDAPNLTWFCQAVNV
Ga0105236_103820923300009619Marine OceanicMAAANKVPDNLNYLANISFRLTMEDAPSLTWFCQSANVPGISVDAIDVTNPYCPSILFIQ
Ga0115002_1088603113300009706MarineMAASNKVPDNLNYLSNISFRLTMEDAPHLTWFCQSVNVPGV
Ga0115012_1038660813300009790MarineMAAANKIPDNLNYLSNISFRLAMEDAPNLTWFCQAVNIPGVSI
Ga0098061_133122613300010151MarineMSASNKIPDNLNYLSNISFRLTMEDAPHMTWFCQAANVPGVSI
Ga0133547_1050382843300010883MarineMAAANKVPDNLNYLSNISFRLTMEDSPNITWFCQGVN
Ga0160423_1037936413300012920Surface SeawaterMSASNKVPENLNYLSNVSFRLTMEDAPHLTWFCQSANIPGVSIDSIEVFNPHATVPVSGT
Ga0163180_1048827713300012952SeawaterMAAANKVPDNLNYLSNISFRLAIEDAPHLTWFCQAANVPGVSIPNIEIANPFATVQY
Ga0163111_1153263913300012954Surface SeawaterMSASNKVPENLNYLSNVSFRLTMEDAPHMTWFCQAANIPGVSIDAIEVFNPTATIP
Ga0181367_103250813300017703MarineMATTNKIPDNLNYLSNISFRLTMEDAPSLTWFCQGASIPG
Ga0181373_110242213300017721MarineMAASNKTPDNLNYLSNISFRLTMEDSPNLTWFCQAASIPGVSIDPLEVPTPHATVPFGGN
Ga0181416_114974813300017731SeawaterMAAGSTVPDNLNYLSNISFRLTMQDAPNLTWFCQAINVPGVSIEGIDVFTPYVTMPFAGNKVNFEELS
Ga0181386_120671913300017773SeawaterMAASNKVPDNLNYLSNISFRLMIEDTPHLTWFCQSVNVPGISIQA
Ga0181579_1068101213300018039Salt MarshMSASNEVPENLNYLSNVSFRLTMEDAPHMTWFCQAANIPGVSID
Ga0211646_1018131813300020383MarineMAAANKVPENLNYLSNISFRLTIEDAPNITWFCQAASVPGVSIEGIDVFTP
Ga0211496_1006025233300020405MarineMSASNKVPENLNYLSNVSFRLTMEDAPHMTWFCQA
Ga0213862_1018397113300021347SeawaterMSASNKVPENLNYLSNVSFRLTMEDAPHMTWFCQAANIPGVS
Ga0213858_1012058513300021356SeawaterMSASNKVPENLNYLSNVSFRLTMEDAPHMTWFCQAANIPGVSIDAIEVFNPT
Ga0206685_1014692323300021442SeawaterMAASNTVPDNLNYLSNISFRLTMQDAPNLTWFCQAVNVPGVSIEGID
Ga0206685_1017239913300021442SeawaterMSASNKIPDNLNYLSNISFRLTMEDAPHMTWFCQAAN
Ga0226832_1011941723300021791Hydrothermal Vent FluidsMAAANKTPDNLNYLSNISFRLTMEDSPNITWFCQAAQVPGVSIESIDVFNPHATLPIGGN
Ga0232646_123020713300021978Hydrothermal Vent FluidsMAAANKVPDNLNYLSNISFRLTMQDAPNLTWFCQSANVPGVSIDAIDFQTPYLNI
Ga0187827_1048730923300022227SeawaterMAAGSTVPDNLNYLSNISFRLTMQDAPNLTWFCQAINVPGVSIEGIDVFTPYVTIPFAGN
(restricted) Ga0233447_110707523300024336SeawaterMSASNKVPDNLNYLSNISFRLSMEDAPHLTWFCQSVNVPGVSIEAID
Ga0208920_108591913300025072MarineMSASNKIPDNLNYLSNISFRLTMEDAPHMTWFCQAANVPGVSIDAIEVYNPNATVPLAGSKVNFEELSVR
Ga0208298_101321313300025084MarineMAAGSTVPDNLNYLSNISFRLTMQDAPNLTWFCQAINVPGVSIEGIDVFTPYVTMPFAGNKVNFEE
Ga0208553_104675723300025109MarineMAATNKIPDNLNYLSNISFRLTMEDAPSLTWFCQGASIPGVSIDAIEIYNPHATVPVAGSKVS
Ga0208433_101809813300025114MarineMAAANKVPENLNYLSNISFRLTMEDAPSLTWFCQAVNVPGV
Ga0209645_121863913300025151MarineMSASNKVPDNLNYLSNISFRLTMEDAPHLTWFCQAANIPGVSIDAIEIFNPHATVPVAGSRVN
Ga0208570_100875913300025249Deep OceanMAAANKVPDNLNYLSNISFRLTIEDAPNITWFCQSANVPGVSIEGIDVPTPHATIPFAGN
Ga0208750_106582423300026082MarineMAAGSTVPDNLNYLSNISFRLTMQDAPNLTWFCQAINVPGVSIEGIDVFTPYVTMPF
Ga0207962_105170423300026091MarineMAAANKVPDNLNYLSNISFRLTIEDAPNITWFCQSANVPGVSIE
Ga0208275_106651913300026182MarineMAAGSTVPDNLNYLSNISFRLTMQDAPNLTWFCQAINVPGVSIEGIDVFTP
Ga0207989_111479113300026209MarineMAATNKIPDNLNYLSNISFRLTMEDAPSLTWFCQGASIPGVSIDAIEIYNPHATVPVAGSKVSFEELSVR
Ga0208407_109599423300026257MarineMAAGSTVPDNLNYLSNISFRLTMQDAPNLTWFCQAINVPGVSIEGIDVFTPYVTMPFAGNKVNFEELSVRFIV
Ga0209554_109123533300027685MarineMAAANKVPDNLNYLSNISFRLTMQDAPNLTWFCQSVNVPGVSIDAIDFQT
Ga0209402_1050398813300027847MarineMAASNKVPDNLNYLSNISFRLTMQDAPNLTWFCQSANVPG
Ga0257109_106933733300028487MarineMAASNVVPDNLNYLSNISFRLTMQDAPNITWFCQAVNVPGVSIEGID
Ga0257109_107352133300028487MarineMAAANKVPDNLNYLSNISFRLTIEDAPNITWFCQSANVPGVSIEGID
Ga0257111_119349623300028535MarineMAASNKVPDNLNYLSNISFRLTIEDAPNITWFCQAASVPGVSIEGIDVFTPHATVP
Ga0308010_127382413300031510MarineMAVSNKTPDNLNYLSNISFRLTIEDSPNITWFCQAATVPGVSIEGIE
Ga0308019_1007709013300031598MarineMAVSNKTPDNLNYLSNISFRLTIEDSPNITWFCQAATVPGVSIEGIDV
Ga0308007_1012878923300031599MarineMAASNKVPDNLNYLSNISFRLTMEDAPHLTWFCQSANVPGVSVSTIEM
Ga0302122_1001388853300031675MarineMAASNLVPDNLNYLSNISFRLTMQDAPNLTWFCQAVNVPGVSIEGIDVFTPYVT
Ga0315331_1057879023300031774SeawaterMAASNKTPDNLNYLSNISFRLTMEDAPNLTWFCQAVNVPGVSIEGIDVFNPYAT
Ga0310123_1046837313300031802MarineMAAANKVPDNLNYLSNISFRLTMEDSPNITWFCQGVNVPGV
Ga0315334_1111705713300032360SeawaterMAAGSTVPDNLNYLSNISFRLTMQDAPNITWFCQAVNVPGV
Ga0372840_210207_3_1283300034695SeawaterMAASNTVPDNLNYLSNISFRLTMQDAPNITWFCQAVNVPGVS


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