Metagenome / Metatranscriptome Family F047387

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F047387
Family Type	Metagenome / Metatranscriptome
Number of Sequences	150
Average Sequence Length	42 residues
Representative Sequence	MAAEVAREILTDEEYADAEYRRFLREKDKYVDFDEFCRQEGI
Number of Associated Samples	118
Number of Associated Scaffolds	150

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Archaea
% of genes with valid RBS motifs	84.67 %
% of genes near scaffold ends (potentially truncated)	18.67 %
% of genes from short scaffolds (< 2000 bps)	70.00 %
Associated GOLD sequencing projects	104
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Archaea (86.667 % of family members)
NCBI Taxonomy ID	2157
Taxonomy	All Organisms → cellular organisms → Archaea

Most Common Ecosystem
GOLD Ecosystem	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge (15.333 % of family members)
Environment Ontology (ENVO)	Unclassified (32.667 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (34.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 50.00% β-sheet: 0.00% Coil/Unstructured: 50.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.47
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.47
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 150 Family Scaffolds
PF05016	ParE_toxin	20.67
PF01243	Putative_PNPOx	2.67
PF02805	Ada_Zn_binding	1.33
PF00491	Arginase	1.33
PF03050	DDE_Tnp_IS66	1.33
PF13614	AAA_31	1.33
PF04014	MazE_antitoxin	1.33
PF11842	DUF3362	0.67
PF01844	HNH	0.67
PF03288	Pox_D5	0.67
PF06973	DUF1297	0.67
PF02787	CPSase_L_D3	0.67
PF13424	TPR_12	0.67
PF08352	oligo_HPY	0.67
PF13649	Methyltransf_25	0.67
PF04463	2-thiour_desulf	0.67
PF02786	CPSase_L_D2	0.67
PF01986	DUF123	0.67
PF01139	RtcB	0.67
PF09924	LPG_synthase_C	0.67
PF11950	DUF3467	0.67
PF03400	DDE_Tnp_IS1	0.67
PF17200	sCache_2	0.67
PF13412	HTH_24	0.67
PF04862	DUF642	0.67
PF04019	DUF359	0.67
PF00730	HhH-GPD	0.67
PF02604	PhdYeFM_antitox	0.67
PF13847	Methyltransf_31	0.67
PF14698	ASL_C2	0.67
PF13392	HNH_3	0.67
PF07694	5TM-5TMR_LYT	0.67
PF13414	TPR_11	0.67
PF02525	Flavodoxin_2	0.67
PF01656	CbiA	0.67
PF02540	NAD_synthase	0.67
PF12706	Lactamase_B_2	0.67
PF02142	MGS	0.67
PF00128	Alpha-amylase	0.67
PF00528	BPD_transp_1	0.67

COG ID	Name	Functional Category	% Frequency in 150 Family Scaffolds
COG3436	Transposase	Mobilome: prophages, transposons [X]	1.33
COG2169	Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains	Replication, recombination and repair [L]	1.33
COG0010	Arginase/agmatinase family enzyme	Amino acid transport and metabolism [E]	1.33
COG1690	RNA-splicing ligase RtcB, repairs tRNA damage	Translation, ribosomal structure and biogenesis [J]	0.67
COG4118	Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressor	Defense mechanisms [V]	0.67
COG3378	DNA primase, phage- or plasmid-associated	Mobilome: prophages, transposons [X]	0.67
COG3280	Maltooligosyltrehalose synthase	Carbohydrate transport and metabolism [G]	0.67
COG3275	Sensor histidine kinase, LytS/YehU family	Signal transduction mechanisms [T]	0.67
COG2231	3-Methyladenine DNA glycosylase, HhH-GPD/Endo3 superfamily	Replication, recombination and repair [L]	0.67
COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	Defense mechanisms [V]	0.67
COG1909	Archaeal dephospho-CoA kinase	Coenzyme transport and metabolism [H]	0.67
COG1833	Uri superfamily endonuclease	General function prediction only [R]	0.67
COG1683	Uncharacterized conserved protein YbbK, DUF523 family	Function unknown [S]	0.67
COG1662	Transposase and inactivated derivatives, IS1 family	Mobilome: prophages, transposons [X]	0.67
COG1523	Pullulanase/glycogen debranching enzyme	Carbohydrate transport and metabolism [G]	0.67
COG1194	Adenine-specific DNA glycosylase, acts on AG and A-oxoG pairs	Replication, recombination and repair [L]	0.67
COG1059	Thermostable 8-oxoguanine DNA glycosylase	Replication, recombination and repair [L]	0.67
COG0366	Glycosidase/amylase (phosphorylase)	Carbohydrate transport and metabolism [G]	0.67
COG0296	1,4-alpha-glucan branching enzyme	Carbohydrate transport and metabolism [G]	0.67
COG0177	Endonuclease III	Replication, recombination and repair [L]	0.67
COG0171	NH3-dependent NAD+ synthetase	Coenzyme transport and metabolism [H]	0.67
COG0122	3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase	Replication, recombination and repair [L]	0.67

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	90.67 %
Unclassified	root	N/A	9.33 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	90.67 %
Unclassified	root	N/A	9.33 %

Name	Rank	Taxonomy	Distribution
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	86.67 %
Unclassified	root	N/A	9.33 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	4.00 %

Name	Rank	Taxonomy	Distribution
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	28.67 %
Unclassified	root	N/A	9.33 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.33 %
environmental samples	no rank	All Organisms → cellular organisms → Archaea → environmental samples	1.33 %

Name	Rank	Taxonomy	Distribution
Stenosarchaea group	clade	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group	24.67 %
Unclassified	root	N/A	9.33 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	2.67 %
uncultured archaeon	species	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	1.33 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.67 %

Name	Rank	Taxonomy	Distribution
Methanomicrobia	class	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	24.67 %
Unclassified	root	N/A	9.33 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2.67 %
uncultured archaeon	species	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	1.33 %
Thiotrichales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales	0.67 %

Name	Rank	Taxonomy	Distribution
Methanotrichales	order	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales	15.33 %
Unclassified	root	N/A	9.33 %
Syntrophorhabdales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophorhabdales	2.00 %
uncultured archaeon	species	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	1.33 %
Syntrophobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales	0.67 %
Thiotrichaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Thiotrichaceae	0.67 %

Name	Rank	Taxonomy	Distribution
Methanotrichaceae	family	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae	15.33 %
Unclassified	root	N/A	9.33 %
Syntrophorhabdaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophorhabdales → Syntrophorhabdaceae	2.00 %
uncultured archaeon	species	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	1.33 %
Beggiatoa	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Thiotrichaceae → Beggiatoa	0.67 %
Syntrophaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae	0.67 %

Name	Rank	Taxonomy	Distribution
Methanothrix	genus	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix	15.33 %
Unclassified	root	N/A	9.33 %
Syntrophorhabdus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophorhabdales → Syntrophorhabdaceae → Syntrophorhabdus	2.00 %
uncultured archaeon	species	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	1.33 %
Smithella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Smithella	0.67 %
unclassified Beggiatoa	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Thiotrichaceae → Beggiatoa → unclassified Beggiatoa	0.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	9.33 %
Methanothrix soehngenii	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii	6.67 %
unclassified Syntrophorhabdus	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophorhabdales → Syntrophorhabdaceae → Syntrophorhabdus → unclassified Syntrophorhabdus	2.00 %
uncultured archaeon	species	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	1.33 %
Beggiatoa sp. 4572_84	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Thiotrichaceae → Beggiatoa → unclassified Beggiatoa → Beggiatoa sp. 4572_84	0.67 %
unclassified Smithella	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Smithella → unclassified Smithella	0.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	9.33 %
Methanothrix soehngenii	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii	6.67 %
Syntrophorhabdus sp. PtaB.Bin027	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophorhabdales → Syntrophorhabdaceae → Syntrophorhabdus → unclassified Syntrophorhabdus → Syntrophorhabdus sp. PtaB.Bin027	2.00 %
uncultured archaeon	species	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	1.33 %
Smithella sp. SC_K08D17	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Smithella → unclassified Smithella → Smithella sp. SC_K08D17	0.67 %
Beggiatoa sp. 4572_84	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Thiotrichaceae → Beggiatoa → unclassified Beggiatoa → Beggiatoa sp. 4572_84	0.67 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908028\|beta3_all_NODE_65973_len_898_cov_11_523385	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophorhabdales → Syntrophorhabdaceae → Syntrophorhabdus → unclassified Syntrophorhabdus → Syntrophorhabdus sp. PtaB.Bin027	948	Open in IMG/M
3300000032\|Draft_c0056151	All Organisms → cellular organisms → Archaea	716	Open in IMG/M
3300001213\|JGIcombinedJ13530_102758499	All Organisms → cellular organisms → Archaea	545	Open in IMG/M
3300001213\|JGIcombinedJ13530_105959688	All Organisms → cellular organisms → Archaea	609	Open in IMG/M
3300001410\|JGI20179J14886_1000232	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix	4273	Open in IMG/M
3300001410\|JGI20179J14886_1000831	All Organisms → cellular organisms → Archaea → Euryarchaeota	2538	Open in IMG/M
3300002069\|JGIcombinedJ21912_10201815	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix	667	Open in IMG/M
3300002072\|JGIcombinedJ21914_10193755	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophorhabdales → Syntrophorhabdaceae → Syntrophorhabdus → unclassified Syntrophorhabdus → Syntrophorhabdus sp. PtaB.Bin027	560	Open in IMG/M
3300002220\|MLSBCLC_10136598	All Organisms → cellular organisms → Archaea	694	Open in IMG/M
3300002703\|draft_10895699	All Organisms → cellular organisms → Archaea	617	Open in IMG/M
3300002961\|JGI11641J44799_10016486	All Organisms → cellular organisms → Archaea	2215	Open in IMG/M
3300003432\|JGI20214J51088_10071343	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii	2430	Open in IMG/M
3300003541\|JGI20214J51650_10200867	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Thiotrichaceae → Beggiatoa → unclassified Beggiatoa → Beggiatoa sp. 4572_84	1375	Open in IMG/M
3300005259\|Ga0071344_1021429	All Organisms → cellular organisms → Archaea → Euryarchaeota	12068	Open in IMG/M
3300005259\|Ga0071344_1024480	Not Available	1035	Open in IMG/M
3300005259\|Ga0071344_1035398	Not Available	9319	Open in IMG/M
3300005263\|Ga0071346_1014952	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii	3947	Open in IMG/M
3300005323\|Ga0074198_1015715	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii	1935	Open in IMG/M
3300005325\|Ga0074199_1000926	All Organisms → cellular organisms → Archaea	33396	Open in IMG/M
3300005326\|Ga0074195_1001939	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii	25677	Open in IMG/M
3300005645\|Ga0077109_1110587	All Organisms → cellular organisms → Archaea	732	Open in IMG/M
3300006092\|Ga0082021_1202984	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii	4186	Open in IMG/M
3300006398\|Ga0079067_1002794	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii	1080	Open in IMG/M
3300006434\|Ga0100130_119221	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	550	Open in IMG/M
3300006597\|Ga0079070_1268920	All Organisms → cellular organisms → Archaea	562	Open in IMG/M
3300006642\|Ga0075521_10430695	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix	643	Open in IMG/M
3300006650\|Ga0101722_105220	All Organisms → cellular organisms → Archaea	1451	Open in IMG/M
3300006651\|Ga0101725_116763	All Organisms → cellular organisms → Archaea	738	Open in IMG/M
3300006667\|Ga0101751_107788	All Organisms → cellular organisms → Archaea	1062	Open in IMG/M
3300006671\|Ga0101734_128368	All Organisms → cellular organisms → Archaea	648	Open in IMG/M
3300006838\|Ga0101938_1036667	All Organisms → cellular organisms → Bacteria	727	Open in IMG/M
3300006883\|Ga0102488_115342	All Organisms → cellular organisms → Archaea	588	Open in IMG/M
3300006930\|Ga0079303_10063774	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix	1329	Open in IMG/M
3300006930\|Ga0079303_10167989	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix	866	Open in IMG/M
3300006930\|Ga0079303_10462594	Not Available	544	Open in IMG/M
3300008805\|Ga0115940_1008966	All Organisms → cellular organisms → Archaea	1046	Open in IMG/M
3300009081\|Ga0105098_10351842	All Organisms → cellular organisms → Archaea	720	Open in IMG/M
3300009081\|Ga0105098_10396544	All Organisms → cellular organisms → Archaea	684	Open in IMG/M
3300009082\|Ga0105099_10726217	All Organisms → cellular organisms → Archaea	617	Open in IMG/M
3300009085\|Ga0105103_10156306	All Organisms → cellular organisms → Archaea	1206	Open in IMG/M
3300009085\|Ga0105103_10884455	All Organisms → cellular organisms → Archaea	523	Open in IMG/M
3300009091\|Ga0102851_10439767	All Organisms → cellular organisms → Archaea	1324	Open in IMG/M
3300009091\|Ga0102851_13268746	All Organisms → cellular organisms → Archaea	521	Open in IMG/M
3300009111\|Ga0115026_10450244	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	945	Open in IMG/M
3300009111\|Ga0115026_10562525	All Organisms → cellular organisms → Archaea	859	Open in IMG/M
3300009131\|Ga0115027_10292958	All Organisms → cellular organisms → Archaea	1090	Open in IMG/M
3300009131\|Ga0115027_10664085	All Organisms → cellular organisms → Archaea → Euryarchaeota	777	Open in IMG/M
3300009131\|Ga0115027_10932507	All Organisms → cellular organisms → Archaea	674	Open in IMG/M
3300009131\|Ga0115027_11750573	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	519	Open in IMG/M
3300009146\|Ga0105091_10158307	All Organisms → cellular organisms → Archaea	1064	Open in IMG/M
3300009165\|Ga0105102_10625665	All Organisms → cellular organisms → Archaea	597	Open in IMG/M
3300009168\|Ga0105104_10055769	All Organisms → cellular organisms → Archaea	2146	Open in IMG/M
3300009168\|Ga0105104_10394453	All Organisms → cellular organisms → Archaea	769	Open in IMG/M
3300009179\|Ga0115028_10522701	All Organisms → cellular organisms → Archaea	868	Open in IMG/M
3300009179\|Ga0115028_11425917	All Organisms → cellular organisms → Archaea	584	Open in IMG/M
3300009388\|Ga0103809_1000137	Not Available	43467	Open in IMG/M
3300009566\|Ga0130025_1138258	All Organisms → cellular organisms → Archaea	2735	Open in IMG/M
3300009666\|Ga0116182_1173346	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	985	Open in IMG/M
3300009674\|Ga0116173_1085859	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix	1649	Open in IMG/M
3300009692\|Ga0116171_10268649	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	939	Open in IMG/M
3300009693\|Ga0116141_10458631	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	647	Open in IMG/M
3300009696\|Ga0116177_10365898	All Organisms → cellular organisms → Archaea	763	Open in IMG/M
3300010319\|Ga0136653_10018225	All Organisms → cellular organisms → Archaea	3693	Open in IMG/M
3300010351\|Ga0116248_10196559	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	1656	Open in IMG/M
3300010351\|Ga0116248_10519902	All Organisms → cellular organisms → Archaea	870	Open in IMG/M
3300010352\|Ga0116247_10974056	All Organisms → cellular organisms → Archaea	620	Open in IMG/M
3300010353\|Ga0116236_10050755	All Organisms → cellular organisms → Archaea	4417	Open in IMG/M
3300010365\|Ga0116251_10358923	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii	812	Open in IMG/M
3300013090\|Ga0163209_1179372	All Organisms → cellular organisms → Archaea	727	Open in IMG/M
3300014490\|Ga0182010_10061696	All Organisms → cellular organisms → Archaea	1809	Open in IMG/M
3300014490\|Ga0182010_10099390	All Organisms → cellular organisms → Archaea	1455	Open in IMG/M
3300014490\|Ga0182010_10272806	All Organisms → cellular organisms → Archaea	903	Open in IMG/M
3300014494\|Ga0182017_10358411	All Organisms → cellular organisms → Archaea	907	Open in IMG/M
3300014496\|Ga0182011_10001012	All Organisms → cellular organisms → Archaea	24569	Open in IMG/M
3300014502\|Ga0182021_10194584	Not Available	2367	Open in IMG/M
3300014502\|Ga0182021_10202322	All Organisms → cellular organisms → Archaea → Euryarchaeota	2320	Open in IMG/M
3300014502\|Ga0182021_10385306	All Organisms → cellular organisms → Archaea	1661	Open in IMG/M
3300014502\|Ga0182021_10479414	All Organisms → cellular organisms → Archaea	1482	Open in IMG/M
3300014502\|Ga0182021_12194841	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	665	Open in IMG/M
3300017988\|Ga0181520_10006616	Not Available	17602	Open in IMG/M
3300018018\|Ga0187886_1177578	All Organisms → cellular organisms → Archaea	832	Open in IMG/M
3300019224\|Ga0180029_1216525	Not Available	2264	Open in IMG/M
3300019225\|Ga0179949_1000926	All Organisms → cellular organisms → Archaea	616	Open in IMG/M
3300019236\|Ga0179944_1130894	All Organisms → cellular organisms → Archaea	822	Open in IMG/M
3300019788\|Ga0182028_1162862	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix	1410	Open in IMG/M
3300020048\|Ga0207193_1000187	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii	110440	Open in IMG/M
3300020163\|Ga0194039_1026306	All Organisms → cellular organisms → Archaea	2282	Open in IMG/M
3300020814\|Ga0214088_1150823	All Organisms → cellular organisms → Archaea	3799	Open in IMG/M
3300022556\|Ga0212121_10099564	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	2216	Open in IMG/M
3300022556\|Ga0212121_10475865	Not Available	804	Open in IMG/M
3300022650\|Ga0236339_1209818	All Organisms → cellular organisms → Archaea	705	Open in IMG/M
3300023207\|Ga0255811_10330981	All Organisms → cellular organisms → Archaea	3586	Open in IMG/M
3300024233\|Ga0224521_1096853	All Organisms → cellular organisms → Archaea	637	Open in IMG/M
3300025533\|Ga0208584_1006976	All Organisms → cellular organisms → Archaea → Euryarchaeota	2947	Open in IMG/M
3300025600\|Ga0209125_1137334	All Organisms → cellular organisms → Archaea	566	Open in IMG/M
3300025692\|Ga0209744_1115352	All Organisms → cellular organisms → Archaea	906	Open in IMG/M
3300025706\|Ga0209507_1017352	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	2830	Open in IMG/M
3300025706\|Ga0209507_1038805	All Organisms → cellular organisms → Archaea	1540	Open in IMG/M
3300025714\|Ga0208458_1050746	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix	1645	Open in IMG/M
3300025720\|Ga0208197_1012446	Not Available	4642	Open in IMG/M
3300025730\|Ga0209606_1026527	All Organisms → cellular organisms → Archaea → Euryarchaeota	3054	Open in IMG/M
3300025748\|Ga0208459_1241806	All Organisms → cellular organisms → Archaea	591	Open in IMG/M
3300025764\|Ga0209539_1048110	Not Available	1842	Open in IMG/M
3300025836\|Ga0209748_1000935	Not Available	14762	Open in IMG/M
3300025852\|Ga0209124_10329810	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophorhabdales → Syntrophorhabdaceae → Syntrophorhabdus → unclassified Syntrophorhabdus → Syntrophorhabdus sp. PtaB.Bin027	568	Open in IMG/M
3300025858\|Ga0209099_1100952	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix	1256	Open in IMG/M
3300025867\|Ga0209098_1051180	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	2097	Open in IMG/M
3300025867\|Ga0209098_1296174	All Organisms → cellular organisms → Archaea	624	Open in IMG/M
3300027419\|Ga0209340_1019162	All Organisms → cellular organisms → Archaea	2078	Open in IMG/M
3300027675\|Ga0209077_1165078	All Organisms → cellular organisms → Archaea	618	Open in IMG/M
3300027693\|Ga0209704_1003673	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	3354	Open in IMG/M
3300027887\|Ga0208980_10043123	All Organisms → cellular organisms → Archaea	2629	Open in IMG/M
3300027887\|Ga0208980_10411126	All Organisms → cellular organisms → Archaea	780	Open in IMG/M
3300027890\|Ga0209496_10646052	All Organisms → cellular organisms → Archaea	575	Open in IMG/M
3300027896\|Ga0209777_10222567	All Organisms → cellular organisms → Archaea	1501	Open in IMG/M
3300027896\|Ga0209777_10240601	All Organisms → cellular organisms → Archaea	1429	Open in IMG/M
3300027899\|Ga0209668_10909482	All Organisms → cellular organisms → Archaea	593	Open in IMG/M
3300027956\|Ga0209820_1214798	All Organisms → cellular organisms → Archaea	537	Open in IMG/M
3300027958\|Ga0209749_1000857	All Organisms → cellular organisms → Archaea	34113	Open in IMG/M
3300027958\|Ga0209749_1202877	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	528	Open in IMG/M
3300028156\|Ga0268281_1000130	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix	57502	Open in IMG/M
3300028169\|Ga0268279_1100013	Not Available	789	Open in IMG/M
(restricted) 3300028581\|Ga0247840_10001373	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix	47944	Open in IMG/M
3300028664\|Ga0302164_10036357	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii	1319	Open in IMG/M
3300029252\|Ga0167179_1000484	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii	24164	Open in IMG/M
3300029288\|Ga0265297_10875823	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Smithella → unclassified Smithella → Smithella sp. SC_K08D17	543	Open in IMG/M
3300029799\|Ga0311022_12385263	All Organisms → cellular organisms → Archaea	555	Open in IMG/M
3300030114\|Ga0311333_10726192	All Organisms → cellular organisms → Archaea	830	Open in IMG/M
3300031232\|Ga0302323_101350947	All Organisms → cellular organisms → Archaea	800	Open in IMG/M
3300031707\|Ga0315291_10126205	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix	2717	Open in IMG/M
3300031707\|Ga0315291_10653326	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	943	Open in IMG/M
3300031746\|Ga0315293_10093155	All Organisms → cellular organisms → Archaea	2565	Open in IMG/M
3300031772\|Ga0315288_10097916	Not Available	3359	Open in IMG/M
3300032069\|Ga0315282_10080089	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	3105	Open in IMG/M
3300032069\|Ga0315282_10136763	All Organisms → cellular organisms → Archaea	1988	Open in IMG/M
3300032143\|Ga0315292_10138676	All Organisms → cellular organisms → Archaea	1943	Open in IMG/M
3300032143\|Ga0315292_10298163	All Organisms → cellular organisms → Archaea	1341	Open in IMG/M
3300032156\|Ga0315295_10672842	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix	1046	Open in IMG/M
3300032163\|Ga0315281_12086959	All Organisms → cellular organisms → Archaea	539	Open in IMG/M
3300032177\|Ga0315276_11432185	All Organisms → cellular organisms → Archaea	721	Open in IMG/M
3300032342\|Ga0315286_10144512	All Organisms → cellular organisms → Archaea	2553	Open in IMG/M
3300032397\|Ga0315287_11037793	All Organisms → cellular organisms → Archaea	953	Open in IMG/M
3300032828\|Ga0335080_12277453	Not Available	519	Open in IMG/M
3300033408\|Ga0316605_11219455	All Organisms → cellular organisms → Archaea	727	Open in IMG/M
3300033414\|Ga0316619_10623973	All Organisms → cellular organisms → Archaea	900	Open in IMG/M
3300033419\|Ga0316601_100548191	All Organisms → cellular organisms → Archaea	1117	Open in IMG/M
3300033820\|Ga0334817_031039	All Organisms → cellular organisms → Archaea	1080	Open in IMG/M
3300034070\|Ga0334822_043797	All Organisms → cellular organisms → Archaea	980	Open in IMG/M
3300034169\|Ga0370480_0005744	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	4490	Open in IMG/M
3300034169\|Ga0370480_0019152	All Organisms → cellular organisms → Archaea	2393	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	73.33%
Engineered	Engineered	26.67%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	42.00%
Terrestrial	Environmental → Terrestrial	31.33%
Wastewater	Engineered → Wastewater	18.00%
Bioremediation	Engineered → Bioremediation	4.00%
Bioreactor	Engineered → Bioreactor	2.67%
Lab Enrichment	Engineered → Lab Enrichment	1.33%
Solid Waste	Engineered → Solid Waste	0.67%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	35.33%
Soil	Environmental → Terrestrial → Soil	24.67%
Anaerobic Digestor	Engineered → Wastewater → Anaerobic Digestor	15.33%
Marine	Environmental → Aquatic → Marine	4.67%
Peat	Environmental → Terrestrial → Peat	4.00%
Tetrachloroethylene And Derivatives	Engineered → Bioremediation → Tetrachloroethylene And Derivatives	4.00%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	2.67%
Anaerobic	Engineered → Bioreactor → Anaerobic	2.67%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	2.00%
Industrial Wastewater	Engineered → Wastewater → Industrial Wastewater	2.00%
Defined Media	Engineered → Lab Enrichment → Defined Media	1.33%
Landfill	Engineered → Solid Waste → Landfill	0.67%
Activated Sludge	Engineered → Wastewater → Activated Sludge	0.67%

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Freshwater → Sediment	16.67%
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified	15.33%
Lake	Environmental → Aquatic → Freshwater → Lake	14.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	13.33%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	11.33%
Wetlands	Environmental → Aquatic → Marine → Wetlands	4.67%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	4.00%
Tetrachloroethylene	Engineered → Bioremediation → Tetrachloroethylene And Derivatives → Tetrachloroethylene	4.00%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.67%
Unclassified	Engineered → Bioreactor → Anaerobic → Unclassified	2.67%
Lentic	Environmental → Aquatic → Freshwater → Lentic	2.00%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	2.00%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	2.00%
Petrochemical	Engineered → Wastewater → Industrial Wastewater → Petrochemical	1.33%
Anaerobic Media	Engineered → Lab Enrichment → Defined Media → Anaerobic Media	1.33%
Aquifer	Environmental → Terrestrial → Deep Subsurface → Aquifer	0.67%
Unclassified	Engineered → Solid Waste → Landfill → Unclassified	0.67%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified	0.67%
Unclassified	Engineered → Wastewater → Industrial Wastewater → Unclassified	0.67%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	16.67%
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified	15.33%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	9.33%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	8.00%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	7.33%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	4.67%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	4.67%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	4.67%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.00%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	4.00%
Unclassified	Engineered → Bioremediation → Tetrachloroethylene And Derivatives → Tetrachloroethylene → Unclassified	4.00%
Unclassified	Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified	2.67%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	2.00%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	2.00%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	2.00%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.33%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.33%
Unclassified	Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified	1.33%
Unclassified	Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified	1.33%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.67%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Aquifer → Unclassified	0.67%
Unclassified	Engineered → Solid Waste → Landfill → Unclassified → Unclassified	0.67%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified	0.67%
Unclassified	Engineered → Wastewater → Industrial Wastewater → Unclassified → Unclassified	0.67%

Habitat	Taxonomy	Distribution
Anaerobic Digestor Sludge	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge	15.33%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	8.67%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	8.00%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	7.33%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	7.33%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	6.00%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	4.67%
Sediment	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Sediment	4.67%
Bioremediated Contaminated Groundwater	Engineered → Bioremediation → Tetrachloroethylene And Derivatives → Tetrachloroethylene → Unclassified → Bioremediated Contaminated Groundwater	4.00%
Anaerobic Enrichment Culture	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Anaerobic Enrichment Culture	2.67%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.67%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	2.00%
Anoxic Lake Water	Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Lake Water	2.00%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	2.00%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	2.00%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	2.00%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	1.33%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	1.33%
Saline Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water	1.33%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	1.33%
Hydrocarbon Resource Environments	Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments	1.33%
Anaerobic Digester Digestate	Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Digester Digestate	1.33%
Anoxic Zone Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater	0.67%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	0.67%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment	0.67%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.67%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.67%
Brackish Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Brackish Water	0.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	0.67%
Sediment	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Sediment	0.67%
Aquifer Solids	Environmental → Terrestrial → Deep Subsurface → Aquifer → Unclassified → Aquifer Solids	0.67%
Landfill Leachate	Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate	0.67%
Wastewater Treatment Plant	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Wastewater Treatment Plant	0.67%
Biosolids	Engineered → Wastewater → Industrial Wastewater → Unclassified → Unclassified → Biosolids	0.67%
Hydrocarbon Resource Environments	Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified → Hydrocarbon Resource Environments	0.67%
Enrichment Culture	Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified → Enrichment Culture	0.67%
Anaerobic Biogas Reactor	Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Biogas Reactor	0.67%
Granular Sludge	Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Granular Sludge	0.67%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908028	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog Site B3	Environmental	Open in IMG/M
3300000032	Oil sands microbial community from Northern Alberta which degrade Naphthaline	Engineered	Open in IMG/M
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental	Open in IMG/M
3300001410	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-1 deep-072012	Environmental	Open in IMG/M
3300002069	Barrow Graham LP Ref core NGADG0002-212 (Barrow Graham LP Ref core NGADG0002-212,NGADG0004-211, ASSEMBLY_DATE=20131010)	Environmental	Open in IMG/M
3300002072	Barrow Graham LP Ref core NGADG0011-211 (Barrow Graham LP Ref core NGADG0011-211,NGADG0004-312, ASSEMBLY_DATE=20131005)	Environmental	Open in IMG/M
3300002220	Wastewater microbial communities from Syncrude, Ft. McMurray, Alberta - West In Pit SyncrudeMLSB2011	Engineered	Open in IMG/M
3300002703	Wastewater microbial communities from Syncrude, Ft. McMurray, Alberta - Microbes from Oil sands tailings Tailings Pond 5 - 2012TP5	Engineered	Open in IMG/M
3300002961	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site A1 Bulk	Environmental	Open in IMG/M
3300003432	Wetland sediment microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site B2 Bulk	Environmental	Open in IMG/M
3300003541	Wetland sediment microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site B2 Bulk	Environmental	Open in IMG/M
3300005259	Freshwater pond sediment microbial communities from Middleton WI, enriched with Humic Acid and Glucose under anaerobic conditions - HA Sample 1	Environmental	Open in IMG/M
3300005263	Freshwater pond sediment microbial communities from Middleton WI, enriched with Humic Acid Only under anaerobic conditions - HA Sample 3	Environmental	Open in IMG/M
3300005323	Bioremediated contaminated groundwater from EPA Superfund site, New Mexico - Sample SAE3-23	Engineered	Open in IMG/M
3300005325	Bioremediated contaminated groundwater from EPA Superfund site, New Mexico - Sample SAE3-47	Engineered	Open in IMG/M
3300005326	Bioremediated contaminated groundwater from EPA Superfund site, New Mexico - Sample HSE6-23	Engineered	Open in IMG/M
3300005645	Brackish water microbial communities from Lake Sakinaw in Canada: eDNA_2 (120m)	Environmental	Open in IMG/M
3300006092	Activated sludge microbial communities from wastewater treatment plant in Ulu Pandan, Singapore	Engineered	Open in IMG/M
3300006398	Active sludge microbial communities from Illinois, USA, of municipal wastewater-treating anaerobic digesters - ADurb_Cas_03_SludgeMetaT (Metagenome Metatranscriptome)	Engineered	Open in IMG/M
3300006434	T18 (2) (Live), Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times	Environmental	Open in IMG/M
3300006597	Active sludge microbial communities from Illinois, USA, of municipal wastewater-treating anaerobic digesters - ADurb_Oil_03_SludgeMetaT (Metagenome Metatranscriptome)	Engineered	Open in IMG/M
3300006642	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D	Environmental	Open in IMG/M
3300006650	T5 (1) (Live) Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times	Environmental	Open in IMG/M
3300006651	T8 (1) (Live), Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times	Environmental	Open in IMG/M
3300006667	T8 (1) BES Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times	Environmental	Open in IMG/M
3300006671	T10 (3) (Live), Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times	Environmental	Open in IMG/M
3300006838	Combined Assembly of Gp0125106, Gp0125107, Gp0125108	Environmental	Open in IMG/M
3300006883	T10 (1) BES, Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times	Environmental	Open in IMG/M
3300006930	Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Methanogen_OWC	Environmental	Open in IMG/M
3300008805	T5 (1) (Live) Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times DE NOVO	Environmental	Open in IMG/M
3300009081	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015	Environmental	Open in IMG/M
3300009082	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm May2015	Environmental	Open in IMG/M
3300009085	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 10-12cm September2015	Environmental	Open in IMG/M
3300009091	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300009111	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1	Environmental	Open in IMG/M
3300009131	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Open_0915_D1	Environmental	Open in IMG/M
3300009146	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009165	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 1-3cm September2015	Environmental	Open in IMG/M
3300009168	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009179	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_0915_D1	Environmental	Open in IMG/M
3300009388	Metatranscriptome sequencing of an Anaerobic Hexadecane-Degrading Microbial Consortia from University of California, San Diego, USA - Hexadecane	Engineered	Open in IMG/M
3300009566	Methanogenic o-xylene degrading microbial communities from aquifer solids in Pensacola, Florida - enrichment culture X8-AB	Environmental	Open in IMG/M
3300009666	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC077_MetaG	Engineered	Open in IMG/M
3300009674	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC085_MetaG	Engineered	Open in IMG/M
3300009692	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNHW2_MetaG	Engineered	Open in IMG/M
3300009693	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC097_MetaG	Engineered	Open in IMG/M
3300009696	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_STIC10_MetaG	Engineered	Open in IMG/M
3300010319	Anoxic lake water microbial communities from Lake Kivu, Rwanda to study Microbial Dark Matter (Phase II) - Lake Kivu water 275m metaG	Environmental	Open in IMG/M
3300010351	AD_USPNca	Engineered	Open in IMG/M
3300010352	AD_JPHWca	Engineered	Open in IMG/M
3300010353	AD_USCAca	Engineered	Open in IMG/M
3300010365	AD_USDIca	Engineered	Open in IMG/M
3300013090	Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_160m	Environmental	Open in IMG/M
3300014490	Permafrost microbial communities from Stordalen Mire, Sweden - 611E1M metaG	Environmental	Open in IMG/M
3300014494	Permafrost microbial communities from Stordalen Mire, Sweden - 712E3D metaG	Environmental	Open in IMG/M
3300014496	Permafrost microbial communities from Stordalen Mire, Sweden - 711E1D metaG	Environmental	Open in IMG/M
3300014502	Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300017988	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaG	Environmental	Open in IMG/M
3300018018	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_150	Environmental	Open in IMG/M
3300019224	Anaerobic biogas reactor microbial communites from Seattle, Washington, USA - Biogas_R1-B RNA time zero (Metagenome Metatranscriptome)	Engineered	Open in IMG/M
3300019225	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan ? AD_JPNHW1_MetaT (Metagenome Metatranscriptome)	Engineered	Open in IMG/M
3300019236	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Illinois, USA ? AD_STIC10_MetaT (Metagenome Metatranscriptome)	Engineered	Open in IMG/M
3300019788	Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (PacBio error correction)	Environmental	Open in IMG/M
3300020048	Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915	Environmental	Open in IMG/M
3300020163	Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L227-8m	Environmental	Open in IMG/M
3300020814	Granular sludge microbial community from anaerobic digester, University of Toronto, Ontario, Canada - UASBVu03_granules megahit	Engineered	Open in IMG/M
3300022556	Kivu_combined assembly	Environmental	Open in IMG/M
3300022650	Freshwater microbial communities from thermokarst lake SAS2a, Kuujjuarapick, Canada - Sample Winter W3	Environmental	Open in IMG/M
3300023207	Combined Assembly of Gp0238866, Gp0238878, Gp0238879	Engineered	Open in IMG/M
3300024233	Peat soil microbial communities from Stordalen Mire, Sweden - C.F.S.T0	Environmental	Open in IMG/M
3300025533	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-1 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025600	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 11-31A (SPAdes)	Environmental	Open in IMG/M
3300025692	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0004-311 (SPAdes)	Environmental	Open in IMG/M
3300025706	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC028_MetaG (SPAdes)	Engineered	Open in IMG/M
3300025714	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC085_MetaG (SPAdes)	Engineered	Open in IMG/M
3300025720	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNNA4_MetaG (SPAdes)	Engineered	Open in IMG/M
3300025730	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC057_MetaG (SPAdes)	Engineered	Open in IMG/M
3300025748	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC087_MetaG (SPAdes)	Engineered	Open in IMG/M
3300025764	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0011-312 (SPAdes)	Environmental	Open in IMG/M
3300025836	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 004-21A (SPAdes)	Environmental	Open in IMG/M
3300025852	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 011-22A (SPAdes)	Environmental	Open in IMG/M
3300025858	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNHW2_MetaG (SPAdes)	Engineered	Open in IMG/M
3300025867	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNHW1_MetaG (SPAdes)	Engineered	Open in IMG/M
3300027419	Bioremediated contaminated groundwater from EPA Superfund site, New Mexico - Sample SAE3-23 (SPAdes)	Engineered	Open in IMG/M
3300027675	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300027693	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 1-3cm September2015 (SPAdes)	Environmental	Open in IMG/M
3300027887	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site A1 Bulk	Environmental	Open in IMG/M
3300027890	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_0915_D1 (SPAdes)	Environmental	Open in IMG/M
3300027896	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB (SPAdes)	Environmental	Open in IMG/M
3300027899	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL (SPAdes)	Environmental	Open in IMG/M
3300027956	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015 (SPAdes)	Environmental	Open in IMG/M
3300027958	Bioremediated contaminated groundwater from EPA Superfund site, New Mexico - Sample SAE3-47 (SPAdes)	Engineered	Open in IMG/M
3300028156	Saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2011_5_24_50m	Environmental	Open in IMG/M
3300028169	Saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2010_1_5_80m	Environmental	Open in IMG/M
3300028581 (restricted)	Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_17m	Environmental	Open in IMG/M
3300028664	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E3_1	Environmental	Open in IMG/M
3300029252	Biosolids microbial communities from sewage treatment plant in Sweden - SWESTP26 - Henriksdal-digested 138	Engineered	Open in IMG/M
3300029288	Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 137-91	Engineered	Open in IMG/M
3300029799	Metagenomes from anaerobic digester of solid waste, Toronto, Canda. Combined Assembly of Gp0238878, Gp0238879, Gp0242100, Gp0242119	Engineered	Open in IMG/M
3300030114	I_Fen_E2 coassembly	Environmental	Open in IMG/M
3300031232	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_3	Environmental	Open in IMG/M
3300031707	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20	Environmental	Open in IMG/M
3300031746	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_20	Environmental	Open in IMG/M
3300031772	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_20	Environmental	Open in IMG/M
3300032069	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_20	Environmental	Open in IMG/M
3300032143	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_0	Environmental	Open in IMG/M
3300032156	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G14_0	Environmental	Open in IMG/M
3300032163	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_0	Environmental	Open in IMG/M
3300032177	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_0	Environmental	Open in IMG/M
3300032342	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G10_0	Environmental	Open in IMG/M
3300032397	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_0	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300033408	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day20_noCT	Environmental	Open in IMG/M
3300033414	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D4_B	Environmental	Open in IMG/M
3300033419	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day5_noCT	Environmental	Open in IMG/M
3300033820	Peat soil microbial communities from Stordalen Mire, Sweden - 713 E-2-D	Environmental	Open in IMG/M
3300034070	Peat soil microbial communities from Stordalen Mire, Sweden - 713 E-3-M	Environmental	Open in IMG/M
3300034169	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_02D_15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
beta3_all_01262090	2124908028	Soil	MAAEVAREVLTKEEDYADAEYRRFLKEKDKYMDFDEFCRQEGI
Draft_00561512	3300000032	Hydrocarbon Resource Environments	MAAQVAREILNDEEYADAEYQRFLKEKDKYVDFDEFCRKEEI*
JGIcombinedJ13530_1027584992	3300001213	Wetland	MAAEVAREVLTKDEEYADSEYRRFLKEKNKYMDFDEFCRQEGI*
JGIcombinedJ13530_1059596883	3300001213	Wetland	MAAEVVREVLTKEEEYADAEYRRFLREKDKYVDFDDFCRREGI*
JGI20179J14886_10002325	3300001410	Arctic Peat Soil	MGYRGLNMAAEVAREVLTKEEDYADAEYRRFLKEKDKYMDFDEFCRQEGI*
JGI20179J14886_10008316	3300001410	Arctic Peat Soil	MAPEELLTKDYADAEYRRFLKEKDKYMDFDEFCRQEEI*
JGIcombinedJ21912_102018153	3300002069	Arctic Peat Soil	MAPEELLTKDYADAEYRRFLKEKDKYMDFDEFCRQE
JGIcombinedJ21914_101937551	3300002072	Arctic Peat Soil	AEVAREVLTKEEDYADAEYRRFLKEKDKYMDFDEFCRQEGI*
MLSBCLC_101365982	3300002220	Hydrocarbon Resource Environments	MAAEIAREILTKEEEYADAEYRRFLKEKTKYVDFDEFCRQEGI*
draft_108956991	3300002703	Hydrocarbon Resource Environments	MAAEIANKVLNDEEYADAEYRRFLKEKDKYMDFDEFCRKEGI*
JGI11641J44799_100164864	3300002961	Wetland	MAAEIAREVLTEEEQYADAEYRRFLKDKDKYKDFDEFCHEQGI*
JGI20214J51088_100713432	3300003432	Wetland	MAAEIASEVLTDEEYADAEYRRFLREKDKYVDFDEFCRQEGI*
JGI20214J51650_102008671	3300003541	Wetland	MAAEIANQVLADEEYADAEYRRFLKEKDKYTDFDEFCRKEGI*
Ga0071344_102142918	3300005259	Anaerobic Enrichment Culture	MAAEIAGEILTDEEYADAEYRRFLREKDKYVDFYEFCRQEGI*
Ga0071344_10244802	3300005259	Anaerobic Enrichment Culture	MAAEIASETLTDEEYADAEYRRFLREKDKYVDFDEFCRQEGI*
Ga0071344_10353983	3300005259	Anaerobic Enrichment Culture	MAAEVSREILTDEEYADAEYRRLLKEKDQYMDFDEFCREEGI*
Ga0071346_10149523	3300005263	Anaerobic Enrichment Culture	MAAEITNEILTDEEYADAEYRRFLREKDKYVDFDEFCRQEGI*
Ga0074198_10157152	3300005323	Bioremediated Contaminated Groundwater	MAAEVAREVLTTKEEEYADAEYRRFLKEKDKYADFDEFCREEGI*
Ga0074199_100092619	3300005325	Bioremediated Contaminated Groundwater	MAAEIASEILTDEEYADAEYRRFLREKDKYADFDEFCRQEGI*
Ga0074195_100193928	3300005326	Bioremediated Contaminated Groundwater	MAAEIAREILTDEEYADAEYRRLLREKDKYMDFDEFCREEGI*
Ga0077109_11105872	3300005645	Brackish Water	MAAEVAIEVLSDEEEYADAEYRRFLREKDKYVDFDDFCRQEGI*
Ga0082021_12029843	3300006092	Wastewater Treatment Plant	MASEIAREVLTDEEYADAEYRRFLKEKDKYMDFDEFCREEGI*
Ga0079067_10027941	3300006398	Anaerobic Digestor Sludge	QVVRKILTDEEYADAEYRRFLKEKDKYVDFDEFCRKEGI*
Ga0100130_1192212	3300006434	Sediment	MYAIDILTDEEYADAEYRRFLREKDKYVDFDEFCRQEGI*
Ga0079070_12689202	3300006597	Anaerobic Digestor Sludge	MAAEIASEVLTDEEYADAEHRRFLKEKDKYTDFDEFCRKEGF*
Ga0075521_104306952	3300006642	Arctic Peat Soil	MAAEVAREVFTNEEEYADAEYKRFLKEKDKYMDFDEFCRQEGI*
Ga0101722_1052203	3300006650	Sediment	MHAIDILTDEEYADAEYRRFLREKDKYVDFDEFCRQEGI*
Ga0101725_1167632	3300006651	Sediment	MAAEISREVIILDEEYADAEYRRFLREEDKYMDFDEFCCQEGI*
Ga0101751_1077881	3300006667	Sediment	ELNMAAEIANEVLTDEEYADAEYRRLLKEKDKYMDFDEFCREEGI*
Ga0101734_1283682	3300006671	Sediment	MHAIDIITDEEYADAEYRRFLREKDKYVDFDEFCRQEGI*
Ga0101938_10366671	3300006838	Sediment	MAAEVSREILTDEEYADAEYRRLLKEKYQYVDFDEFCREEGI*
Ga0102488_1153422	3300006883	Sediment	MHAIDIRTDEEYADAEYRRFLREKDKYVDFDEFCRQEGI*
Ga0079303_100637742	3300006930	Deep Subsurface	MAAEVSGEVVIQDEEYANAEYRRFLREKDKYMDFDEFCRQEGI*
Ga0079303_101679891	3300006930	Deep Subsurface	AEIASEILTDEEYADAEYRRFLREKDKYVDFDEFCRQEGI*
Ga0079303_104625942	3300006930	Deep Subsurface	MAAEIAREVLSKEEEYADAEYRRFLKEKDKYVDFDEFCRQEGI*
Ga0115940_10089663	3300008805	Sediment	MAVEISREVIIQDEEYADAEYRRFLREEDKYMDFDEFCCQEGI*
Ga0105098_103518422	3300009081	Freshwater Sediment	MAAEISREVTIQDEEYADAEYRRFLREKDKYMDFDEFCRQEGI*
Ga0105098_103965441	3300009081	Freshwater Sediment	MAAEVVREVLTKDEEYADAEYRRFLKEKEKYMDFDEFCRQEGI*
Ga0105099_107262173	3300009082	Freshwater Sediment	MAAEVAREVLTKEEEYADSEYRRFLKEKDKYMDFDEFCRQEGI*
Ga0105103_101563062	3300009085	Freshwater Sediment	MAAEVAREVLTKEEEYADAEYRRFLKEKDKYMDFDEFCRREGI*
Ga0105103_108844552	3300009085	Freshwater Sediment	MAAEIASEILTDEEYANAEYRRFLREKDKYVDFDECCRQEGI*
Ga0102851_104397674	3300009091	Freshwater Wetlands	MAAEIASEILTDEEYADAEYRRFLREKDKYVDFDEFCRQEGI*
Ga0102851_132687462	3300009091	Freshwater Wetlands	MAAEVSGEVVIQDEEYANAEYRRFLREKDKYMDFDEFCLQEGI*
Ga0115026_104502441	3300009111	Wetland	EILTDEEYADAEYRRFLREKDKYVDLDEFCRQEGI*
Ga0115026_105625251	3300009111	Wetland	MIEMAAKVSGEVVIQDEEYANAEYRRFLREKDKYMDFDEFCRQEGI*
Ga0115027_102929581	3300009131	Wetland	MAAEVVAKEILTDEEYADAEYRRFLKEKDKYVDFDEFCRKEGI*
Ga0115027_106640851	3300009131	Wetland	MIEMAAEVSGEVVIQDEEYANAEYRRFLREKDKYMDFDEFCRQEGI*
Ga0115027_109325071	3300009131	Wetland	VSGEVVIQDEEYANAEYRRFLREKDKYMDFDEFCRQEGI*
Ga0115027_117505733	3300009131	Wetland	MAAEIANQVLTDEEYADAEYRRFLKEKDKYTDFDEFCRKEGI*
Ga0105091_101583072	3300009146	Freshwater Sediment	MAAEVVREVLTKEEEYADAEYRRFLKEKEKYMDFDEFCRREGI*
Ga0105102_106256651	3300009165	Freshwater Sediment	MAAEVAREVLTKEDEYADAEYRRFLKEKEKYMDFD
Ga0105104_100557694	3300009168	Freshwater Sediment	MAAEVASEILTDEEYADAEYRRFLREKDKYVDFDEFCRQEGI*
Ga0105104_103944531	3300009168	Freshwater Sediment	VAREVLTKEEEYADAEYRRFLKEKEKYMDFDEFCRREGI*
Ga0115028_105227012	3300009179	Wetland	MAAEIAREVLSKEEEYADAEYRRFLKEKDKYVDFDEFCRQEEI*
Ga0115028_114259171	3300009179	Wetland	MAAEIASEILTDEEYADAEYRRFLREKDKYVDFDEFCR
Ga0103809_10001377	3300009388	Enrichment Culture	MAAEVVRKILTDEEYADAEYRRFLKEKDKYVDFDEFCRKEGI*
Ga0130025_11382584	3300009566	Aquifer Solids	MAAEITKEVQTEEEVYADAEYRKFLKEKSQYKDFDEFCREQGI*
Ga0116182_11733463	3300009666	Anaerobic Digestor Sludge	MSKESGELNMAAEIASEVLTDEEYADAEYRRFLKEKDKYMDFDEFCREEGI*
Ga0116173_10858593	3300009674	Anaerobic Digestor Sludge	MAAEIANKVLNDEEYADAEYRRFLKEKDKYVDFDKFCRKEGI*
Ga0116171_102686492	3300009692	Anaerobic Digestor Sludge	MAAEIAREILTDEEYADAEYRRLLKEKDKYMDFDEFCREEGI*
Ga0116141_104586311	3300009693	Anaerobic Digestor Sludge	LNMAAEIASEVLTDEEYADEQYRRFLKEKDQYMDFDEFCREEGI*
Ga0116177_103658981	3300009696	Anaerobic Digestor Sludge	TRKGARRIEMAAEVSGEVVIQDEEYANAEYRRFLREKDKYMDFDEFCRQEGI*
Ga0136653_100182252	3300010319	Anoxic Lake Water	MVMMAAEVAKEILTDEEKYADAEYRRFLKEKDKYVDFDEFCRREGI*
Ga0116248_101965594	3300010351	Anaerobic Digestor Sludge	IASKVLADEEYADAEYRRFLKEKDKYMDFDEFCREEGI*
Ga0116248_105199023	3300010351	Anaerobic Digestor Sludge	MAAQVVRKILTDEEYADAEYRRFLKEKDKYVDFDEFCREEGI*
Ga0116247_109740564	3300010352	Anaerobic Digestor Sludge	MAAEIAREILTDEEYADAEYRRLLREKDKYMDFDEFC
Ga0116236_100507555	3300010353	Anaerobic Digestor Sludge	MAAEIASEVLTDEEYADEQYRRFLKEKDQYMDFDEFCREEGI*
Ga0116251_103589233	3300010365	Anaerobic Digestor Sludge	GELNMAAEIAIEVLADEEYADAEYRRFLKEKDKYMDFDEFCREEGI*
Ga0163209_11793722	3300013090	Freshwater	MAAEVTREVLTDEEEYADAEYRRFLREKDKYVDFDDFCRQEGI*
Ga0182010_100616963	3300014490	Fen	MAAEITGKAITKEEEYADAEYRRFLKEKDKYVDFDEFCRKKGI*
Ga0182010_100993903	3300014490	Fen	MAAEVAREVFTNEEEYADAEYKRFLKEKDKYMDFDEFCRKEGI*
Ga0182010_102728063	3300014490	Fen	MAAEVAREVLTKEEDYADAEYRRFLREKDKYMDFDEFCRQEGI*
Ga0182017_103584111	3300014494	Fen	MAAEVAREVLTKEEEYADAEYRRFLKEKDKYIDFDEFCRQEGI*
Ga0182011_100010124	3300014496	Fen	MGYRGLNMAAEVAREVLTKEEDYADAEYRRFLKEKDKYMDFDEFCRQEDI*
Ga0182021_101945842	3300014502	Fen	MAAEVAREVLTKEEEYADSEYRRFLKEKDKYMDFDEFCRQERI*
Ga0182021_102023227	3300014502	Fen	MAPDELLTKDYADAEYRRFLKEKDKYMDFDEFCRQEEAKVKSL*
Ga0182021_103853061	3300014502	Fen	AITKEEEYADAEYRRFLKEKDKYVDFDEFCRKKGI*
Ga0182021_104794142	3300014502	Fen	MAAEVAREVFTKEEDYADAEYRRFLREKDKYMDFDEFCRQEGI*
Ga0182021_121948412	3300014502	Fen	MAAEVAREVLTNKEEYADAEYKRFLKEKDKYMDFDEFCRKEGI*
Ga0181520_100066162	3300017988	Bog	MAADSAKSVLDKDEEYVDAEYRKFLEEKDKYVNFDEFCREKGI
Ga0187886_11775782	3300018018	Peatland	MAAEVAKETPVEAASTDEEYADAEYKRFLKEKDKYVDFDEFCRQEEI
Ga0180029_12165253	3300019224	Anaerobic Biogas Reactor	MAAQVVRKILTDEEYADAEYRRFLKEKDKYVDFDEFCRKEGI
Ga0179949_10009262	3300019225	Anaerobic Digestor Sludge	MAAEIAREILTDEEYADAEYRRLLREKDKYMDFDEFCREEGI
Ga0179944_11308942	3300019236	Anaerobic Digestor Sludge	MAAQVAREILNDEEYADAEYQRFLKEKDKYVDFDEFCRKEEI
Ga0182028_11628622	3300019788	Fen	MGYRGLNMAAEVAREVLTKEEDYADAEYRRFLKEKDKYMDFDEFCRQEDI
Ga0207193_10001875	3300020048	Freshwater Lake Sediment	MAAEISREVISLDEEYADAEYRRFLREKDKYMDFDEFCRQEGI
Ga0194039_10263066	3300020163	Anoxic Zone Freshwater	MHAIDILTDEEYADAEYRRFLREKDKYVDFDEFCRQEGI
Ga0214088_11508232	3300020814	Granular Sludge	MAAEVVRKILTDEEYADAEYRRFLKEKDKYVDFDEFCRKEGI
Ga0212121_100995644	3300022556	Anoxic Lake Water	MVMMAAEVAKEILTDEEKYADAEYRRFLKEKDKYVDFDEFCRREGI
Ga0212121_104758651	3300022556	Anoxic Lake Water	MAAEVTREVLTDEEEYADAEYRRFLREKDKYVDFDDFCRQEGI
Ga0236339_12098182	3300022650	Freshwater	MAAEITGKAITKEEEYADAEYRRFLKEKDKYVDFDEFCRKKGI
Ga0255811_103309816	3300023207	Anaerobic Digester Digestate	MAAEVGRKILTDEEYADAEYRRFLKEKDKYVDFDEFCRKEGI
Ga0224521_10968532	3300024233	Soil	MAAEVAREVLTKEEDYADAEYRRFLREKDKYMDFDEFCRQEGI
Ga0208584_10069762	3300025533	Arctic Peat Soil	MAPEELLTKDYADAEYRRFLKEKDKYMDFDEFCRQEEI
Ga0209125_11373342	3300025600	Arctic Peat Soil	MAAEVAREVFINEEEYADAEYKRFLKEKDKYMDFDEFCRQEGI
Ga0209744_11153524	3300025692	Arctic Peat Soil	AEVAREVFINEEEYADAEYKRFLKEKDKYMDFDEFCRQEGI
Ga0209507_10173525	3300025706	Anaerobic Digestor Sludge	MAAEIAIEVLADEEYADAEYRRFLKEKDKYMDFDEFCREEGI
Ga0209507_10388052	3300025706	Anaerobic Digestor Sludge	MAAEIASEVLTDEEYADAEHRRFLKEKDKYTDFDEFCRKEGF
Ga0208458_10507462	3300025714	Anaerobic Digestor Sludge	MAAEIANKVLNDEEYADAEYRRFLKEKDKYVDFDKFCRKEGI
Ga0208197_10124469	3300025720	Anaerobic Digestor Sludge	MAAEIANQVLADEEYADAEYRRFLKEKDKYTDFDEFCRKEGI
Ga0209606_10265271	3300025730	Anaerobic Digestor Sludge	MAAEIASEVLTDEEYADAEYRRFLKEKDKYMDFDEFCREEGI
Ga0208459_12418062	3300025748	Anaerobic Digestor Sludge	MAAEIANKVLNDEEYADAEYRRFLKEKDKYMDFDEFCRKEGI
Ga0209539_10481101	3300025764	Arctic Peat Soil	AEVAREVLTKEEDYADAEYRRFLREKDKYMDFDEFCRQEGI
Ga0209748_10009358	3300025836	Arctic Peat Soil	MGYRGLNMAAEVAREVLTKEEDYADAEYRRFLKEKDKYMDFDEFCRQEGI
Ga0209124_103298102	3300025852	Arctic Peat Soil	KMAAEVAREVLTKEEDYADAEYRRFLKEKDKYMDFDEFCRQEGI
Ga0209099_11009525	3300025858	Anaerobic Digestor Sludge	MAAEIASEILTDEEYADAEYRRFLREKDTYMDFDE
Ga0209098_10511803	3300025867	Anaerobic Digestor Sludge	MAAEIASEILTDEEYADAEYRRFLREKDTYMDFDEFCREEDI
Ga0209098_12961742	3300025867	Anaerobic Digestor Sludge	MAAEIAREILTDEEYADAEYRRLLKEKDKYMDFDEFCREEGI
Ga0209340_10191623	3300027419	Bioremediated Contaminated Groundwater	MAAEVAREVLTTKEEEYADAEYRRFLKEKDKYADFDEFCREEGI
Ga0209077_11650783	3300027675	Freshwater Sediment	MAAEVVREVLTKEEEYADAEYRRFLKEKEKYFDFYEFCRRE
Ga0209704_10036734	3300027693	Freshwater Sediment	MAAEIANQVLTDEEYADAEYRRFLKEKDKYMDFDEFCRKEGI
Ga0208980_100431232	3300027887	Wetland	MAAEIAREVLTEEEQYADAEYRRFLKDKDKYKDFDEFCHEQGI
Ga0208980_104111262	3300027887	Wetland	MAAGIAREVLTEEEQYADAEYRRFLKEKDKYIDFDEFCREQGI
Ga0209496_106460522	3300027890	Wetland	MAAEIASEILTDEEYADAEYRRFLREKDKYVDFDE
Ga0209777_102225673	3300027896	Freshwater Lake Sediment	MAAEVVTKENLTDEEYADAEYRKFLKEKDKYVDFDEFCREEEI
Ga0209777_102406012	3300027896	Freshwater Lake Sediment	MAAEITGNAITKEEEYADAEYRLFLKEKDKYVGFDEFCRKIGI
Ga0209668_109094822	3300027899	Freshwater Lake Sediment	MHAIDILTDEEYADAEYRLFLREMDKYVDFDEFCRQEGI
Ga0209820_12147982	3300027956	Freshwater Sediment	MAAEISREVTIQDEEYADAEYRRFLREKDKYMDFDEFCRQEGI
Ga0209749_100085722	3300027958	Bioremediated Contaminated Groundwater	MAAEIASEILTDEEYADAEYRRFLREKDKYADFDEFCRQEGI
Ga0209749_12028771	3300027958	Bioremediated Contaminated Groundwater	MDAEIAREILTDEEYADAEYRRLLREKDKYMDFDEFCREEGI
Ga0268281_100013030	3300028156	Saline Water	MAAEVAIEVLSDEEEYADAEYRRFLREKDKYVDFDDFCRQEGI
Ga0268279_11000131	3300028169	Saline Water	MAAEVAIEVLSDEEEYADAEYRRFLREKDKYVDFDDFC
(restricted) Ga0247840_1000137327	3300028581	Freshwater	MAAEIASEILTDEEYADAEYRRFLREKDKYVDFDEFCRQEGI
Ga0302164_100363572	3300028664	Fen	MAAEVAREVLTKEEDYVDAEYRRFLREKDKYMDFDEFCRQEGI
Ga0167179_10004842	3300029252	Biosolids	MAAEIASKVLADEEYADAEYRRFLKEKDKYMDFDEFCREEGI
Ga0265297_108758231	3300029288	Landfill Leachate	VNMAAEVVRKILTDEEYADAEYRRFLKEKDKYVDFDEFCRKEGI
Ga0311022_123852632	3300029799	Anaerobic Digester Digestate	MASEIASEVLKDEEYADAEYRRFHKEKDKYMDFDEFCREEGI
Ga0311333_107261923	3300030114	Fen	MAAEVAREVLTKEEEYADSEYRRFLKEKDKYMDFDEFCRQERI
Ga0302323_1013509472	3300031232	Fen	REVFTNKEEYADAEYKRFLKEKDKYMDFDEFCRKEGI
Ga0315291_101262053	3300031707	Sediment	MATEVSRETLTDEEYADAEYRRFLKEKDKYVDFDEFCRKEEI
Ga0315291_106533263	3300031707	Sediment	MDMMAAEVAKEILTDEEKYADAEYRRFLKEKDKYVDFDEFCRREGI
Ga0315293_100931552	3300031746	Sediment	MDMMVDEVAKEILTDEEKYADAEYRRFLKEKDKYVDFDEFCRREGI
Ga0315288_100979164	3300031772	Sediment	ATEVSRETLTDEEYADAEYRRFLKEKDKYVDFDEFCRKEEI
Ga0315282_100800894	3300032069	Sediment	MDMMAAEVAKEILTDEEKYADAEYRRFLKEKDKYGL
Ga0315282_101367635	3300032069	Sediment	MVMMAAEVAKEILTDEEKYADAEYRRFLREKDKYVDFDEFCRREGI
Ga0315292_101386763	3300032143	Sediment	MHAIDILTDEEYVDAEYRQFLIEKDKYVDFDEFCRQEGI
Ga0315292_102981631	3300032143	Sediment	MAAEIASEILNDEEYADAEYRRFLREKDKYVDFDEFCRQEGI
Ga0315295_106728421	3300032156	Sediment	MQAIDILTDEEYDYAEYGRFLREKDKYVDFDEFCRQEGI
Ga0315281_120869591	3300032163	Sediment	MAAEISREVIIQDEEYADAEYRRFLREKDKYMDFDEFCRQEGI
Ga0315276_114321851	3300032177	Sediment	MAAEIVAKENLTDEEYAGAEYRRFLKEKDKYVDFDEFC
Ga0315286_101445125	3300032342	Sediment	MAAEVAREILTDEEYADAEYRRFLREKDKYVDFDEFCRQEGI
Ga0315287_110377933	3300032397	Sediment	MHAIDILTDEEYADAEYRRFLREKDKYVDFDDFCRQEGI
Ga0335080_122774531	3300032828	Soil	MAAEITREIQTEEEAYADAEYRKILKEKSQYKDFNEFCREQRI
Ga0316605_112194552	3300033408	Soil	MAAEVSGEVVIQDEEYANAEYRRFLREKDKYMDFDEFCRQEGI
Ga0316619_106239732	3300033414	Soil	MIEMAAKVSGEVVIQDEEYANAEYRRFLREKDKYMDFDEFCRQEGI
Ga0316601_1005481911	3300033419	Soil	MAAEVVAKEILTDEEYADAEYRRFLKEKDKYVDFDEFCRKEGI
Ga0334817_031039_377_508	3300033820	Soil	MAAEVAREVFTNEEEYADAEYKRFLKEKDKYMDFDEFCRQERI
Ga0334822_043797_545_676	3300034070	Soil	MAAEVAREVLTKEEEYADAEYRRFLKEKDKYIDFDEFCRQEGI
Ga0370480_0005744_227_358	3300034169	Untreated Peat Soil	MAAEVAREVLTKEEEYADAEYRRFLKEKDKYMDFDEFCRQEGI
Ga0370480_0019152_1355_1486	3300034169	Untreated Peat Soil	MAAEISREVIGKEEEYADTEYRRFLKEKSKYVDFDEFCRQEGI

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters