3300005753: Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean - mega-assembly

Overview

Basic Information

• IMG/M Taxon OID: 3300005753
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114926 | Gp0118626 | Ga0077776
• Sample Name: Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean - mega-assembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Marine Biological Laboratory
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 589999552
• Sequencing Scaffolds: 26
• Novel Protein Genes: 31
• Associated Families: 28

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	2
Not Available	9
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Scleractinia → Astrocoeniina → Acroporidae → Acropora	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Tenacibaculum → Tenacibaculum caenipelagi	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → Frankia discariae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial Community Analysis Of Hydrothermal Vent Diffuse Flow Samples From Mid-Cayman Rise, Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Deep-Sea Hydrothermal Vent → Microbial Community Analysis Of Hydrothermal Vent Diffuse Flow Samples From Mid-Cayman Rise, Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine hydrothermal vent biome → marine hydrothermal vent → hydrothermal fluid
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Mid-Cayman Rise
• Coordinates
  • Lat. (^o): 18.375
  • Long. (^o): -81.797
  • Alt. (m): N/A
  • Depth (m): 2370

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001334	Metagenome / Metatranscriptome	720	Y
F003161	Metagenome	504	N
F005815	Metagenome / Metatranscriptome	389	Y
F011620	Metagenome / Metatranscriptome	289	Y
F012083	Metagenome / Metatranscriptome	284	Y
F013484	Metagenome / Metatranscriptome	271	Y
F017326	Metagenome / Metatranscriptome	241	N
F019388	Metagenome / Metatranscriptome	230	N
F023595	Metagenome / Metatranscriptome	209	Y
F023622	Metagenome / Metatranscriptome	209	Y
F024444	Metagenome / Metatranscriptome	206	Y
F036294	Metagenome / Metatranscriptome	170	Y
F043217	Metagenome / Metatranscriptome	156	Y
F043455	Metagenome	156	Y
F044553	Metagenome / Metatranscriptome	154	N
F045766	Metagenome	152	Y
F046978	Metagenome	150	Y
F047906	Metagenome / Metatranscriptome	149	N
F055294	Metagenome	139	Y
F072734	Metagenome	121	N
F074891	Metagenome / Metatranscriptome	119	Y
F079616	Metagenome	115	Y
F085725	Metagenome	111	Y
F087386	Metagenome / Metatranscriptome	110	Y
F094378	Metagenome / Metatranscriptome	106	Y
F100047	Metagenome	103	Y
F105335	Metagenome / Metatranscriptome	100	N
F105919	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0077776_1001314	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1292
Ga0077776_1007148	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1411
Ga0077776_1007257	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	1324
Ga0077776_1017976	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	1772
Ga0077776_1023412	Not Available	1762
Ga0077776_1027646	All Organisms → cellular organisms → Bacteria → Proteobacteria	1885
Ga0077776_1028620	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1459
Ga0077776_1035485	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1123
Ga0077776_1038360	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22	1628
Ga0077776_1044930	Not Available	1631
Ga0077776_1047943	Not Available	4665
Ga0077776_1048993	Not Available	1190
Ga0077776_1049576	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	1210
Ga0077776_1075285	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae	1317
Ga0077776_1083906	Not Available	2252
Ga0077776_1089650	All Organisms → cellular organisms → Bacteria	1271
Ga0077776_1130337	All Organisms → Viruses → Predicted Viral	1634
Ga0077776_1132403	Not Available	1099
Ga0077776_1153706	Not Available	1134
Ga0077776_1160506	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Scleractinia → Astrocoeniina → Acroporidae → Acropora	2529
Ga0077776_1165883	Not Available	1789
Ga0077776_1181278	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	2540
Ga0077776_1183525	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2518
Ga0077776_1208765	Not Available	1155
Ga0077776_1222411	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Tenacibaculum → Tenacibaculum caenipelagi	1530
Ga0077776_1238699	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → Frankia discariae	1842

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0077776_1001314	Ga0077776_10013141	F074891	MSAVTHDVVPKIKTRKKRAKGVAALRKIRRALARKKLEEMHEEKILKENIYDVFSDEDDPINI*
Ga0077776_1007148	Ga0077776_10071484	F100047	NLMASTVSSSFVCPATVSKLVSVEVCTTADASEEFGVLIRLSGNSLSDGEQYVAGGANVASTTATGTAMNYVSKDTDFNVISGNSIECAIATTDAAVISATVVMTFA*
Ga0077776_1007257	Ga0077776_10072571	F055294	VPKKKTTKMLEPETGAPSLPVSEGTIGVEYTPPPVGEREETQKYLCANCQGEIELRSPRCQTCNESIDWSSLDD*
Ga0077776_1017976	Ga0077776_10179763	F024444	MVAPVAARAAANTDTTMLLVGAGALLLLAKWGIGNIPNIPNPLPAAGRAVAKTADELTGGLQKGRDETITEWFFEVDVPFSDKRFPIAPGLVRERGDVYTTEGPGPGGQMGDVPWTAMDIVEPDQPWGSYFFEIDLPGVPAYDVRDAPADLYRSTIGRVLR*
Ga0077776_1023412	Ga0077776_10234121	F023595	DFGSEQGLSNFETGGIAVGYVEDFKIAKTPLWAKRCCL*
Ga0077776_1027646	Ga0077776_10276462	F005815	MTMEITRLTTYWTTHEADTVIDLLDRLRDALWETYGDQIIQIHRETCDDGIPDPNQCELPFNDDIPF*
Ga0077776_1028620	Ga0077776_10286202	F105335	PDATGFGQAPRVLCLDWSEAGLIGGTSTGYVFRLPSGQGDWQPLHREKASPVYALGQAPGQIVAGKTAQLLKLPKP*
Ga0077776_1035445	Ga0077776_10354451	F105919	NPEKGDKKSAFMADKRRTSTTQKGDILSEKADMGVQKGGHSYVPPTISNHQLNIKEPSEDGATANFDYPEWFQPLTALKGFKSIAHKNAIISVREGCEEAGVNEAEIVLAFADYYRDGGRATNGWSDPVAALVRTLPVQINKTRKTGKTGKTGKTGKTGNRPPPKVFSVNSQDFAAMKAEQDARKARG*
Ga0077776_1035485	Ga0077776_10354852	F003161	LSRSGALDRIDVLLSTITDPAFTAVIRAEPLALSGTPVLAYWIQSRTNGWQTLGDIGSTTTIMVRAYFRLQVSVDVRESIELELWDAMVEVDSKLRSDANLAGNCTDSTVGSATVATMDMGGSLYRTATIPFDLQIYEEVTITP*
Ga0077776_1038360	Ga0077776_10383603	F012083	MTRLGDPPPGNQASGSDSAARRRLADSRTVLGGKGSLRRAKSGRALASCAPFCRTIIRDGRLRREPDAQQFLCLTKDKNQMRVDKTS*
Ga0077776_1044930	Ga0077776_10449302	F047906	VALAAKFTQKRTVTKEHTPDAIRVPVAHRPVVGLGVLAVRWHHAVTKVRVALRLDMLAVAKRVSRVEIKFAVTAKAGLVQTQRLAVANAVVIRIVVAERVA*
Ga0077776_1047943	Ga0077776_10479431	F094378	MQRRRSNHPGNSQAKGPCIITLERRLGLTEGVNLSGNKTEGVD*
Ga0077776_1048993	Ga0077776_10489931	F045766	MREAQEQLERVIARMQAIQTTIKASGQPASMFELGELKDLGREYARLVDDLANTSAGPWA
Ga0077776_1049576	Ga0077776_10495763	F043455	MRKETVEEYLRRGKTITKIPQVLDTIGSIWNQQGIGADKDRHDHKKFGIRLMDWKSMQPDIRFDTEDDDRKYWNQLNKRCDKLIKKIKKEQKKT*
Ga0077776_1049576	Ga0077776_10495764	F017326	MIMNDYEKVKIEINESVTSDNFKEHLRKEYHNSFDEYMEDTRGIDLDVFYEERSIPISELVPKGMTIKEYFGKEQRLLREENISYVKFD*
Ga0077776_1075285	Ga0077776_10752853	F005815	MTMQVTRLTTYWTLDAAATAIDFLDVLRNALWETYGEQITEMYRETCDTRIQDINQCELEFDDDIPF*
Ga0077776_1083906	Ga0077776_10839063	F023622	MKTFKEFQGETPTQIVEQVYFKIRIPDMSTMFMKASSESAVKLDMRQKLKPDVVKEVSIERVTKAEMRKIYRAMGQGKEDEKEPAEEK*
Ga0077776_1089650	Ga0077776_10896502	F001334	MMKFKEYLQLNADDSIEQIMNGEWIQKSRSTWKATDDEDNKIEIHNDGHDPELNGESWTVHTNTFAPKAFAYFTKQFIKEVKPSEVTHARTRIYPSTSN*
Ga0077776_1089650	Ga0077776_10896503	F044553	MPEQESIHQLQTEIQTLKIKDEFRTKELDALMKKLSDTSSKLNALSENIGRLLAGQELHKTSDNEVRDELKILHTRIGDLHDKCTEMIDKTETRVSSDISLLYKKVD
Ga0077776_1130337	Ga0077776_11303371	F046978	MAKTKKVTVSMTEETKQKALYLSVLVLGTENISGYISYLINKAHLEAKK*
Ga0077776_1132403	Ga0077776_11324032	F019388	MRTPNEQNPYLVETKNGQILKFSKIDADNEAAIKQLDGDDVEVFHDGKLQYKLHGIEQGKLF*
Ga0077776_1132403	Ga0077776_11324033	F011620	MFDKILQAVLEFFGKEKPELPTEENNESLEALERIEALDKIGESS*
Ga0077776_1132403	Ga0077776_11324034	F072734	MSMMKFDGSKIKEIRKRKEQGLPPPPTDGDVVEQSKNAKGGSELIYQRVKKRVPDDLWNYFQIILSRVREYEDKPKILWF
Ga0077776_1153706	Ga0077776_11537062	F036294	VTVMDKGFSDEAVVGVKSVADEDVVAYLRVKLPESDSNV*
Ga0077776_1160506	Ga0077776_11605062	F043217	VVIELRVVQFWSEIKLAITNRTPATRSCNFVIARLISDQIALHSVQLHYKFQAEYPE
Ga0077776_1165883	Ga0077776_11658831	F013484	MDIHLEFSGRTLSTEHQAIVDALNEFLAWLPDGEDPNAALRLAMMILEAANVAPQAVLAQAVGFGQDRSVRVYKQRLREEGLSGLFDHPIPGRPALTTKTEVEKALLRVILSAVIEEHALPDDVTLAEGVNRILREAQEPEAGHVTASMIEAIRLRWGIQRPTLVRQLQATQLAATAERAQMRLGQTRVGGAFILAVLLVETGWLKLAYLLPMAANYAVTAVQWLLTAIFAVIFGVQRAFHLDDVRDIGFALVTGRPRPLTHGTFQHLLHAIPKEKAQAFYAASAQLEVQALGEGPRRISLDGHNLPRYTRLVDLPKGKIGNTGRILKAEELVLAYDLDAHLWLALRVYRGTKKLSQGLVEMVREILKHRGDIPGRLRVFFDKGGYSGQIFRDLAEESQVRFYTPAVRYPANVELWEQLKDSDFDPEPFAFDKHADLPPDRRPVYRLADTEMTLNVRADRKVVDTVTLRAIVLHDPQGEKPAERWPVVFLTDDRDIDARALLNEFGDHWGQEFAHRIGKHDLCLDILPPGYVLKTRQ
Ga0077776_1181278	Ga0077776_11812781	F079616	MNDTFKIGEIVVCVNAKRRWYRLGGLQEDEMYTVTGFNPYDGGLILKEVKSPRSGYNAFAACRFRKVYYNFASNVLEEVQPKEYGIAAITNYELSMLN*
Ga0077776_1183525	Ga0077776_11835252	F005815	MTMNNTRLTTYWSSDDAATVIDFLDLLRDALWETYGDQITQMYREAYDDRFQDPNQCELEFDDDIPF*
Ga0077776_1208765	Ga0077776_12087651	F085725	PITFNCNKVTRDIMNLLFVSIVLLITAVSLGLYLVFLGLHKHKSSPGLGLTHASFALAGIIVLFMQIYTGPTDKLNNFAALFLIFALVGGGMVFALREENKPPSMMVVIIHAIMGLAGVSSLLINLV*
Ga0077776_1222411	Ga0077776_12224112	F087386	MTKSELFEKYKINETHSVWNNNIDNWISVEVYRIMHGGELPKQDDLSVKWICDFLDKKENDFQWWVDVVMTRKDWGSLYLTAKRMIYSHCEQILEELNI*
Ga0077776_1238699	Ga0077776_12386991	F013484	FHFPDGTLSTEHQALVEALNRFLAVLPDDEDQEVVVRLVMELLELADVASQGEIARAAGYSERTLRFYKRRLHDEGLGGLFDHPIPGRPAVSTQPAVEGAVVQAIVEAIITQHTLPDDAALAEAVNHHLADKKDPSAGQVTTSMVETIRLGWGIKRLPVRQQLQDAQTSPAPQQEMVHLGRTRVGGAFILAVLLVEEGLLRFAHLLSMAPGYAVTSVQWLLTAIFSVICGVERAFHLDDVRDIGFALLTGRPRPLSHSTFQHLLHAIASWDAIRFYLATARQAVRKVGEGTRRISLDGHVLPRHTKLVELAKGRIASTGRVLKAEELISAFDLDAGSFLALRVRQGGKNPTHVLLALVKELCMHRRGLEGLLRLFFDRGSYKGFIFEALSKLDNVHFYTPAVRYPTNVEQWEALTEEDFEPDPFVFDKHADLLPEEQPRFRLADITMEINIWEGKRLTGTVEVRAIVVHDPQGQTPKERWPFVLLTDDRDTPARELANEWGDHWGHEFAHRVGKHDLCLDILPPGYTLTTTRDEQGRLQRQVEYDTASFFLSAWLRCLVFSLMTLFGQALGGECANMWAGTLLRKFIRRPATLYLVGKELHVVFDPFPDQEEL