NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F094378

Metagenome / Metatranscriptome Family F094378

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F094378
Family Type Metagenome / Metatranscriptome
Number of Sequences 106
Average Sequence Length 42 residues
Representative Sequence WRRRSNHPGNSQAKGPYIITLERRLSLTEGVNLSGNQTEGV
Number of Associated Samples 78
Number of Associated Scaffolds 106

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 10.38 %
% of genes near scaffold ends (potentially truncated) 92.45 %
% of genes from short scaffolds (< 2000 bps) 78.30 %
Associated GOLD sequencing projects 73
AlphaFold2 3D model prediction Yes
3D model pTM-score0.20

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (57.547 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(33.019 % of family members)
Environment Ontology (ENVO) Unclassified
(75.472 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(86.792 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      
Full Alignment
Alignment of all the sequences in the family.
Sorting
Filter
Selection
Vis.elements
Color scheme
Extras
Export
Help

IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64
1LPjun09P162000mDRAFT_10228002
2LPaug09P202000mDRAFT_10060511
3JGI12027J13101_1009121
4TuiMalila_10033941
5TuiMalila_10237891
6TahiMoana_10274141
7Ga0066855_100962592
8Ga0066856_104011031
9Ga0066851_100857471
10Ga0066846_102873981
11Ga0066846_102957671
12Ga0066833_102316111
13Ga0066834_100421741
14Ga0066850_102940841
15Ga0066850_103570191
16Ga0077776_10479431
17Ga0066381_101868642
18Ga0066374_102264482
19Ga0081601_10081894
20Ga0066836_103216251
21Ga0066836_103956691
22Ga0066836_105818842
23Ga0066836_106243102
24Ga0066836_107860522
25Ga0068472_102359996
26Ga0068472_106653341
27Ga0068487_13932601
28Ga0068483_14849171
29Ga0068488_13758301
30Ga0068488_13999591
31Ga0068493_106810732
32Ga0066366_100864702
33Ga0105012_11674151
34Ga0105016_11474861
35Ga0111541_105607091
36Ga0115658_10116548
37Ga0115657_10805911
38Ga0115657_11086121
39Ga0117901_11897581
40Ga0117902_11910601
41Ga0117902_13082001
42Ga0117922_10410031
43Ga0117925_10666391
44Ga0118722_12707391
45Ga0118722_13648392
46Ga0118722_13964101
47Ga0114993_100997264
48Ga0114993_103351921
49Ga0114993_107062211
50Ga0114994_109770692
51Ga0115011_115598021
52Ga0114933_107883981
53Ga0115002_1000968112
54Ga0133547_108091881
55Ga0138349_10065431
56Ga0163108_105350612
57Ga0163108_107981661
58Ga0163108_109669681
59Ga0211679_10370562
60Ga0211495_10271432
61Ga0211562_10443091
62Ga0211568_10267201
63Ga0211563_10494311
64Ga0211570_10110081
65Ga0211570_10118171
66Ga0211611_10861732
67Ga0211660_100670291
68Ga0211587_100982792
69Ga0211587_101125071
70Ga0211546_102855741
71Ga0211546_105405171
72Ga0211585_100782404
73Ga0211585_100833804
74Ga0211585_102056981
75Ga0211503_100354991
76Ga0211503_100403191
77Ga0211503_102874401
78Ga0211503_103521562
79Ga0211503_105537931
80Ga0206678_103066152
81Ga0187827_100417754
82Ga0207921_1032461
83Ga0207918_1054971
84Ga0207918_1344181
85Ga0208059_10187131
86Ga0208058_10160281
87Ga0207920_10401881
88Ga0208335_10169772
89Ga0208640_10946722
90Ga0208522_10680132
91Ga0207992_11517661
92Ga0208765_11686681
93Ga0208766_10173151
94Ga0208411_10077911
95Ga0208764_101672471
96Ga0209089_104646081
97Ga0209403_100642281
98Ga0209402_105492012
99Ga0257109_12355981
100Ga0257112_101767102
101Ga0310120_101517012
102Ga0310124_107775102
103Ga0310344_102172682
104Ga0310344_107899231
105Ga0315329_104114002
106Ga0310345_109420372
Powered by MSAViewer


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 15.94%    β-sheet: 0.00%    Coil/Unstructured: 84.06%
Feature Viewer
Position :
0
Zoom :
x 1
+ Add Multiple Variants

Enter the variants

Position

Original

Variant

Get Predictions
Get Predictions

Enter the variants

Position

Original

Variant

510152025303540WRRRSNHPGNSQAKGPYIITLERRLSLTEGVNLSGNQTEGVSequenceα-helicesβ-strandsCoilSS Conf. score
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer

WebGL does not seem to be available.

This can be caused by an outdated browser, graphics card driver issue, or bad weather. Sometimes, just restarting the browser helps. Also, make sure hardware acceleration is enabled in your browser.

For a list of supported browsers, refer to http://caniuse.com/#feat=webgl.

Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.20
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Visualization
All Organisms
Unclassified
42.5%57.5%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts

Associated Scaffolds





 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Marine
Deep Ocean
Seawater
Marine
Marine
Seawater
Marine
Marine
Seawater
Marine
Deep-Sea Hydrothermal Vent
Diffuse Hydrothermal Fluid
Black Smokers Hydrothermal Plume
Deep Subsurface
33.0%8.5%3.8%3.8%2.8%7.5%12.3%19.8%2.8%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts



Associated Samples


Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
LPjun09P162000mDRAFT_102280023300000163MarineRRRSNHPGNSQAKGPYIITLERRLGLTEGVNLSGNKTEGVD*
LPaug09P202000mDRAFT_100605113300000323MarineGCRRSNHPGNSQAKGPCIITLERRLGLTEGVNLSGNKTEGVD*
JGI12027J13101_10091213300001006Deep OceanNHPGNSQAKGPYIITLERRRSLTEGAKLSGNKTDGVF*
TuiMalila_100339413300001676Black Smokers Hydrothermal PlumeDQFNWRRRSNHPGNSQAKGPYIITLERRLGLTEGVNLSGNKTEGVD*
TuiMalila_102378913300001676Black Smokers Hydrothermal PlumeYGRDQFNWRRRSNHPGNSQAKGPYIITLESRLSLTEGVNLSGN*
TahiMoana_102741413300001679Black Smokers Hydrothermal PlumeRRSNHPGNSQAKGPYIITLERRRSLTEGAKLSGNKTEGVF*
Ga0066855_1009625923300005402MarineSYGRDQFSWRRRSNHPGNSQAKGPYIITLERRLGLTEGVNLSGK*
Ga0066856_1040110313300005404MarineMPSIRERPILLAPKEQRNPGNSQAKGPYIITLESRLCLTEGVNLSG
Ga0066851_1008574713300005427MarineYGRDQFNWRRRSNHPGNSQAKGPYIMTLERRLSLTEGVNLSGNRTEGVY*
Ga0066846_1028739813300005429MarineWRRRSNHPGNSQAKGPYIITLERRLSLTEGVNLSGNQTEGV*
Ga0066846_1029576713300005429MarineYGRDQFNWRRRSNHPGNSQAKEPYIITLERRLGLTEGVNLSGNKTEGVD*
Ga0066833_1023161113300005595MarineFNWRRRSNHPGNSQAKGPYIMTLERRLSLTEGVNLSGNRTEGVY*
Ga0066834_1004217413300005596MarineRDQFNWRRRSNHPGNSQAKGPYIMTLERRLSLTEGVNLSGNRTEGVY*
Ga0066850_1029408413300005605MarineWRRRSNHPGNSQAKGPYIITLERRLSLTEGVNLSGNRTEGVY*
Ga0066850_1035701913300005605MarineRSNHPGNSQAKGPYIITLERRLSLTEGVNLSGNQTEGV*
Ga0077776_104794313300005753Deep-Sea Hydrothermal VentMQRRRSNHPGNSQAKGPCIITLERRLGLTEGVNLSGNKTEGVD*
Ga0066381_1018686423300005945MarineSWRRRSNHPGNSQAKGPYIITLERRHSLTEGAKLSGNKTEGVF*
Ga0066374_1022644823300006012MarineWRRRSNHPGNSQAKGPCIITLERRLGLTEGVNLSGNKTEGVD*
Ga0081601_100818943300006079Diffuse Hydrothermal FluidMQRRRSNHPGNSQAKGPYIITLERRLDLTEGVNLSGNKTEGVD*
Ga0066836_1032162513300006166MarineMPPYGRDQFYWRRRSNHPGNSQAKGPYIITLESRHCLTEGVN
Ga0066836_1039566913300006166MarineDQFDWRRRSNHPGNSQAKGPYIITLERRLSLTEGVNLSGN*
Ga0066836_1058188423300006166MarineIWRRRSNHPGNSQAKGPYIITLERRQSLTEGVNLSGKKTDGVC*
Ga0066836_1062431023300006166MarineDQFDWRRRSNHPGNSQAKGPYIITLERRLSLTEGVNLSGNQTEGV*
Ga0066836_1078605223300006166MarineNWRRRSNHPGNSQAKGPYIITLERRLSLTEGVNLSGN*
Ga0068472_1023599963300006313MarineMTNYGRDQFNWRRRSNHPGNSQAKGPCIITLERRLGLTEGVNLSGNKTEGVD*
Ga0068472_1066533413300006313MarineNHSRRSNHPGNSQAKGPYIITLERRLSLTEGVNLSGN*
Ga0068487_139326013300006315MarineAKRPQRRRSKHPGNSQAKGPHIITLERRLCLTEGVNLSGTQTEGA*
Ga0068483_148491713300006330MarineKDFRASRRSNHPGNSQAKGPYIITLERRHSLTEGAKLSGN*
Ga0068488_137583013300006331MarineLHENSQAKGPYIITLESRLALTEGVNLSGNKTEGVD*
Ga0068488_139995913300006331MarineRRRSKHPGNSQAKGPYIITLERRLGLTEGVNLSGNKTEGVD*
Ga0068493_1068107323300006341MarineLQRRRSNHPGNSQAKGPIIITLERRLSLTEGVNLSGK*
Ga0066366_1008647023300007283MarineRDQYNWRRRSNHPGNSQAKGPYIITLERRLSLTEGVNLSGTWTEG*
Ga0105012_116741513300007509MarinePGNSQAKGPYIITLERRLSLTEGVNLSGTWTEGEDKELL*
Ga0105016_114748613300007512MarineLAPKEQHPGNSQAKGPYIITLERRLSLTEGVNLSGTRTEGDDKEL
Ga0111541_1056070913300008097MarineHPGNSQAKGPYIITLERRLSLTEGVNLSGTRTEGEDKELL*
Ga0115658_101165483300008629MarineKTYSTKYILYGRDQFDWRRRSNHPGNSQAKGPYIITLESRHGLTEGVNLSGN*
Ga0115657_108059113300008735MarineRRRSNHPGNSQAKGPYIITLERRLCLTEGVNLSGN*
Ga0115657_110861213300008735MarineDQFNWRRRSNHPGNSQAKGPYIITLERRLCLTEGVNLSGS*
Ga0117901_118975813300009103MarineAPKEQRPGNSQAKGPYIITLERRLSLTEGVNLSGN*
Ga0117902_119106013300009104MarineRRRSKHPGNSQAKGPHIITLERRLCLTEGVNLSGN*
Ga0117902_130820013300009104MarineQFNWRRRSNHPGNSQAKGPYIITLERRLSLTEGVNLSGTQTEGAG*
Ga0117922_104100313300009109MarineYPGNSQAKGPYIITLERRRGLTEGVNLSGTWTEGAC*
Ga0117925_106663913300009110MarineRRSNHPGNSQAKGPYIITLERRRGLTEGVNLSGTWTEGAC*
Ga0118722_127073913300009376MarineRRRSNHPGNSQAKGPYIITLERRFCLTEGVNLSGN*
Ga0118722_136483923300009376MarineQAKGPYIITLERRLSLTEGVNLSGTWTEGEDKELL*
Ga0118722_139641013300009376MarineDQFNWRRRSNHPGNSQAKGPYIITLERRLCLTEGVNLSGTQTEGV*
Ga0114993_1009972643300009409MarineRSNRPGNSQAKGPYIITLESRLSLTEGANLSGKKTDGV*
Ga0114993_1033519213300009409MarineRRSNHPGNSQAKGPYIITLERRRSLTEGANLSGNKTDGVL*
Ga0114993_1070622113300009409MarineLIRERPIYWRRRSNHPGNSQAKGPYIITLESRRSLTEGINLSGKKTDGV*
Ga0114994_1097706923300009420MarineWRRRSNHPGNSQAKGPYIITLERRRSLTEGANLSGKKTDGV*
Ga0115011_1155980213300009593MarineGRDQFNWRRRSNHPGNSQAKGPYIITLERRRSLTEGVKLSGTQTDGV*
Ga0114933_1078839813300009703Deep SubsurfaceLQRRRSNHPGNSQAKGPIIITLERRLSLTEGVNLSGNKTEGA*
Ga0115002_10009681123300009706MarineWRRRSNHPGNSQAKGPYIITLERRRSLTEGVNLSGKKTDGV*
Ga0133547_1080918813300010883MarineRSNHPGNSQAKGPYIITLERRLSLTEGANLSGKKTDGVS*
Ga0138349_100654313300011312Deep OceanQFNWRRRSNHLGNSQAKGPYIITLERRLSLTEGVNLSGK*
Ga0163108_1053506123300012950SeawaterWRRRSNHPGNSQAKGPYIITLESRHGLTEGVNLSGN*
Ga0163108_1079816613300012950SeawaterRRRSNHPGNSQAKGPYIITLESRRCLTEGVNLSGN*
Ga0163108_1096696813300012950SeawaterNWRRRSNHPGNSQAKGPYIITLERRLSLTEGVNLSGNRTEGVY*
Ga0211679_103705623300020263MarineMQRRRSNHPGNSQAKGPCIITLERRLGLTEGVNLSGNKTEGVD
Ga0211495_102714323300020268MarineYIWRRRSNHPGNSQAKGPYIITLERRLSLTEGANLSGKKTDGV
Ga0211562_104430913300020275MarineDSYGRDQFNWRRRSNHLGNSQAKGPYIITLERRLGLTEGVNLSGK
Ga0211568_102672013300020277MarineRSNHPGNSQAKGPYIITLERRLSLTEGVNLSGNRTEGVY
Ga0211563_104943113300020322MarineWRRRSNHPGNSQAKGPYIITLERRLGLTEGVNLSGK
Ga0211570_101100813300020344MarineDQFNWRRRSNHPGNSQAKEPYIITLERRLDLTEGVNLSGNKTEGVD
Ga0211570_101181713300020344MarineNHPGNSQAKGPYIITLERRLSLTEGVNLSGNRTEGVY
Ga0211611_108617323300020357MarineLAPKEQRPGNSQAKGPYIMTLERRLSLTEGVNLSGN
Ga0211660_1006702913300020373MarineWRRRSNHPGNSQAKGPYIITLERRLSLTEGVNLSGNRTEGVY
Ga0211587_1009827923300020411MarineHPGNSQAKGPYIITLERRVDLTEGVNLSGKKTEGV
Ga0211587_1011250713300020411MarineRSNHPGNSQAKGPYILTLERENILAEGANLSGTQTEGAKG
Ga0211546_1028557413300020462MarineRRSNHPGNSQAKGPIEAQYSGKRLSSTEGVKLSGKKTEGAL
Ga0211546_1054051713300020462MarineWRRRSNHPGNSQAKGPYIITLERRLSLTEGANLSGKKTDGV
Ga0211585_1007824043300020477MarinePGNSQAKGPYIITLERRLSLTEGVNLSGTWTEGAG
Ga0211585_1008338043300020477MarineRRRSNHPGNSQAKGPCILTLERENILAEGANLSGTQTEGVKG
Ga0211585_1020569813300020477MarineYGRDQFNWRRRSNHPGNSQAKGPYIITLESRLCLTEGVNLSGT
Ga0211503_1003549913300020478MarineWRRRSNHPGNSQAKGPYIITLERRLCLTEGVNLSGN
Ga0211503_1004031913300020478MarineSNHPGNSQAKGPYILTLEREYILAEGANLSGTQTEGAKGLIWK
Ga0211503_1028744013300020478MarineDWRRRSNHPGNSQAKGPYIITLERRLCLTEGVNLSGN
Ga0211503_1035215623300020478MarineLAPKEQRPGNSQAKGPYIITLERRLGLTEGVNLSGTWTEGEDKELL
Ga0211503_1055379313300020478MarineDWRRRSNHPGNSQAKGPYIITLERRVDLTEGVNLSGKKTEGV
Ga0206678_1030661523300021084SeawaterHPGNSQAKGPYILTLEREKFLAEGANLSGYKDRGGK
Ga0187827_1004177543300022227SeawaterMWRRRSNHPGNSQAKGPYILTLERDLFLAEGANLSGKQTEGVKELV
Ga0207921_10324613300025191Deep OceanNWRRRSNHPGNSQAKGPCIITLERRLGLTEGVNLSGNKTEGVD
Ga0207918_10549713300025196Deep OceanWRRRSNHPGNSQAKGPYIITLERRRSLTEGAKLSGNKTDGVF
Ga0207918_13441813300025196Deep OceanENSQRRRSNHLGNFQAKGPYIITLERRLSLTEGVNLSGNKTEGVY
Ga0208059_101871313300025198Deep OceanNHLGNFQAKGPYIITLERRLSLTEGVNLSGNKTEGVY
Ga0208058_101602813300025210Deep OceanNHLGNFQAKGPYIITLERRRSLTEGVNLSGNKTEGVY
Ga0207920_104018813300025215Deep OceanMQRRRSNHPGNSQAKGPYIITLERRLGLTEGVNLSGNKTEGVD
Ga0208335_101697723300025243Deep OceanSNHLGNFQAKGPYIITLERRLSLTEGVNLSGNKTEGVY
Ga0208640_109467223300026208MarineMWRRRSNHPGNSQAKGPYILTLERDLFLAEGANLSGKQTEGVKE
Ga0208522_106801323300026254MarinePYGRDQFYWRRRSNHPGNSQAKGPYIITLESRHSLTEGVNLSGN
Ga0207992_115176613300026263MarineIIYITKCHTYGRDQFDWRRRSNHPGNSQAKGPYIITLERRLSLTEGVNLSGNQTEGV
Ga0208765_116866813300026265MarineYILYGRDQFDWRRRSNHPGNSQAKGPYIITLERRLSLTEGVNLSGN
Ga0208766_101731513300026269MarineNWRRRSNHPGNSQAKGPYIITLERRLCLTEGVNLSGNRTEGAD
Ga0208411_100779113300026279MarineIIYRRKCQTYGRDQFDWRRRSNHPGNSQAKGPYIITLESRHSLTEGVNLSGN
Ga0208764_1016724713300026321MarineWRRRSNHPGNSQAKGPYIITLESRHGLTEGVNLSGN
Ga0209089_1046460813300027838MarineLIRERPIYWRRRSNHPGNSQAKGPYIITLESRRSLTEGINLSGKKTDGV
Ga0209403_1006422813300027839MarineWRRRSNHPGNSQAKGPYIITLERRRSLTEGVNLSGKKTDGV
Ga0209402_1054920123300027847MarineTLIRERPIYWRRRSNHPGNSQAKGPYIITLESRRSLTEGINLSGKKTDGV
Ga0257109_123559813300028487MarineHLGNFQAKGPYIITLERRLSLTEGVNLSGNKTEGVY
Ga0257112_1017671023300028489MarineRRSNHPGNSQAKGPYIITLERRRSLTEGAKLSGNKTEGVF
Ga0310120_1015170123300031803MarineMQRRRSNHPGNSQAKGPCIITLERRLGLTEGINLSGNKTE
Ga0310124_1077751023300031804MarineMQRRRSNHPGNSQAKGPCIITLERRLGLTEGINLSGNKTEGVD
Ga0310344_1021726823300032006SeawaterLQRRRSNHPGNSQAKGPIIMTLERRLSLTEGVNLSGNKTEGA
Ga0310344_1078992313300032006SeawaterQRRRSNHPGNSQAKGPHIITLERRLCLTEGVNLSGN
Ga0315329_1041140023300032048SeawaterRRRSNHPGNSQAKGPYIITLESRHCLTEGVNLSGN
Ga0310345_1094203723300032278SeawaterFDWRRRSKHPGNSQAKGPCIITLESRRKSLTEGVNLSGTRTEGAK


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.