Basic Information | |
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Family ID | F094378 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 106 |
Average Sequence Length | 42 residues |
Representative Sequence | WRRRSNHPGNSQAKGPYIITLERRLSLTEGVNLSGNQTEGV |
Number of Associated Samples | 78 |
Number of Associated Scaffolds | 106 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 10.38 % |
% of genes near scaffold ends (potentially truncated) | 92.45 % |
% of genes from short scaffolds (< 2000 bps) | 78.30 % |
Associated GOLD sequencing projects | 73 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.20 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (57.547 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (33.019 % of family members) |
Environment Ontology (ENVO) | Unclassified (75.472 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) (86.792 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 15.94% β-sheet: 0.00% Coil/Unstructured: 84.06% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.20 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Marine Deep Ocean Seawater Marine Marine Seawater Marine Marine Seawater Marine Deep-Sea Hydrothermal Vent Diffuse Hydrothermal Fluid Black Smokers Hydrothermal Plume Deep Subsurface |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
LPjun09P162000mDRAFT_10228002 | 3300000163 | Marine | RRRSNHPGNSQAKGPYIITLERRLGLTEGVNLSGNKTEGVD* |
LPaug09P202000mDRAFT_10060511 | 3300000323 | Marine | GCRRSNHPGNSQAKGPCIITLERRLGLTEGVNLSGNKTEGVD* |
JGI12027J13101_1009121 | 3300001006 | Deep Ocean | NHPGNSQAKGPYIITLERRRSLTEGAKLSGNKTDGVF* |
TuiMalila_10033941 | 3300001676 | Black Smokers Hydrothermal Plume | DQFNWRRRSNHPGNSQAKGPYIITLERRLGLTEGVNLSGNKTEGVD* |
TuiMalila_10237891 | 3300001676 | Black Smokers Hydrothermal Plume | YGRDQFNWRRRSNHPGNSQAKGPYIITLESRLSLTEGVNLSGN* |
TahiMoana_10274141 | 3300001679 | Black Smokers Hydrothermal Plume | RRSNHPGNSQAKGPYIITLERRRSLTEGAKLSGNKTEGVF* |
Ga0066855_100962592 | 3300005402 | Marine | SYGRDQFSWRRRSNHPGNSQAKGPYIITLERRLGLTEGVNLSGK* |
Ga0066856_104011031 | 3300005404 | Marine | MPSIRERPILLAPKEQRNPGNSQAKGPYIITLESRLCLTEGVNLSG |
Ga0066851_100857471 | 3300005427 | Marine | YGRDQFNWRRRSNHPGNSQAKGPYIMTLERRLSLTEGVNLSGNRTEGVY* |
Ga0066846_102873981 | 3300005429 | Marine | WRRRSNHPGNSQAKGPYIITLERRLSLTEGVNLSGNQTEGV* |
Ga0066846_102957671 | 3300005429 | Marine | YGRDQFNWRRRSNHPGNSQAKEPYIITLERRLGLTEGVNLSGNKTEGVD* |
Ga0066833_102316111 | 3300005595 | Marine | FNWRRRSNHPGNSQAKGPYIMTLERRLSLTEGVNLSGNRTEGVY* |
Ga0066834_100421741 | 3300005596 | Marine | RDQFNWRRRSNHPGNSQAKGPYIMTLERRLSLTEGVNLSGNRTEGVY* |
Ga0066850_102940841 | 3300005605 | Marine | WRRRSNHPGNSQAKGPYIITLERRLSLTEGVNLSGNRTEGVY* |
Ga0066850_103570191 | 3300005605 | Marine | RSNHPGNSQAKGPYIITLERRLSLTEGVNLSGNQTEGV* |
Ga0077776_10479431 | 3300005753 | Deep-Sea Hydrothermal Vent | MQRRRSNHPGNSQAKGPCIITLERRLGLTEGVNLSGNKTEGVD* |
Ga0066381_101868642 | 3300005945 | Marine | SWRRRSNHPGNSQAKGPYIITLERRHSLTEGAKLSGNKTEGVF* |
Ga0066374_102264482 | 3300006012 | Marine | WRRRSNHPGNSQAKGPCIITLERRLGLTEGVNLSGNKTEGVD* |
Ga0081601_10081894 | 3300006079 | Diffuse Hydrothermal Fluid | MQRRRSNHPGNSQAKGPYIITLERRLDLTEGVNLSGNKTEGVD* |
Ga0066836_103216251 | 3300006166 | Marine | MPPYGRDQFYWRRRSNHPGNSQAKGPYIITLESRHCLTEGVN |
Ga0066836_103956691 | 3300006166 | Marine | DQFDWRRRSNHPGNSQAKGPYIITLERRLSLTEGVNLSGN* |
Ga0066836_105818842 | 3300006166 | Marine | IWRRRSNHPGNSQAKGPYIITLERRQSLTEGVNLSGKKTDGVC* |
Ga0066836_106243102 | 3300006166 | Marine | DQFDWRRRSNHPGNSQAKGPYIITLERRLSLTEGVNLSGNQTEGV* |
Ga0066836_107860522 | 3300006166 | Marine | NWRRRSNHPGNSQAKGPYIITLERRLSLTEGVNLSGN* |
Ga0068472_102359996 | 3300006313 | Marine | MTNYGRDQFNWRRRSNHPGNSQAKGPCIITLERRLGLTEGVNLSGNKTEGVD* |
Ga0068472_106653341 | 3300006313 | Marine | NHSRRSNHPGNSQAKGPYIITLERRLSLTEGVNLSGN* |
Ga0068487_13932601 | 3300006315 | Marine | AKRPQRRRSKHPGNSQAKGPHIITLERRLCLTEGVNLSGTQTEGA* |
Ga0068483_14849171 | 3300006330 | Marine | KDFRASRRSNHPGNSQAKGPYIITLERRHSLTEGAKLSGN* |
Ga0068488_13758301 | 3300006331 | Marine | LHENSQAKGPYIITLESRLALTEGVNLSGNKTEGVD* |
Ga0068488_13999591 | 3300006331 | Marine | RRRSKHPGNSQAKGPYIITLERRLGLTEGVNLSGNKTEGVD* |
Ga0068493_106810732 | 3300006341 | Marine | LQRRRSNHPGNSQAKGPIIITLERRLSLTEGVNLSGK* |
Ga0066366_100864702 | 3300007283 | Marine | RDQYNWRRRSNHPGNSQAKGPYIITLERRLSLTEGVNLSGTWTEG* |
Ga0105012_11674151 | 3300007509 | Marine | PGNSQAKGPYIITLERRLSLTEGVNLSGTWTEGEDKELL* |
Ga0105016_11474861 | 3300007512 | Marine | LAPKEQHPGNSQAKGPYIITLERRLSLTEGVNLSGTRTEGDDKEL |
Ga0111541_105607091 | 3300008097 | Marine | HPGNSQAKGPYIITLERRLSLTEGVNLSGTRTEGEDKELL* |
Ga0115658_10116548 | 3300008629 | Marine | KTYSTKYILYGRDQFDWRRRSNHPGNSQAKGPYIITLESRHGLTEGVNLSGN* |
Ga0115657_10805911 | 3300008735 | Marine | RRRSNHPGNSQAKGPYIITLERRLCLTEGVNLSGN* |
Ga0115657_11086121 | 3300008735 | Marine | DQFNWRRRSNHPGNSQAKGPYIITLERRLCLTEGVNLSGS* |
Ga0117901_11897581 | 3300009103 | Marine | APKEQRPGNSQAKGPYIITLERRLSLTEGVNLSGN* |
Ga0117902_11910601 | 3300009104 | Marine | RRRSKHPGNSQAKGPHIITLERRLCLTEGVNLSGN* |
Ga0117902_13082001 | 3300009104 | Marine | QFNWRRRSNHPGNSQAKGPYIITLERRLSLTEGVNLSGTQTEGAG* |
Ga0117922_10410031 | 3300009109 | Marine | YPGNSQAKGPYIITLERRRGLTEGVNLSGTWTEGAC* |
Ga0117925_10666391 | 3300009110 | Marine | RRSNHPGNSQAKGPYIITLERRRGLTEGVNLSGTWTEGAC* |
Ga0118722_12707391 | 3300009376 | Marine | RRRSNHPGNSQAKGPYIITLERRFCLTEGVNLSGN* |
Ga0118722_13648392 | 3300009376 | Marine | QAKGPYIITLERRLSLTEGVNLSGTWTEGEDKELL* |
Ga0118722_13964101 | 3300009376 | Marine | DQFNWRRRSNHPGNSQAKGPYIITLERRLCLTEGVNLSGTQTEGV* |
Ga0114993_100997264 | 3300009409 | Marine | RSNRPGNSQAKGPYIITLESRLSLTEGANLSGKKTDGV* |
Ga0114993_103351921 | 3300009409 | Marine | RRSNHPGNSQAKGPYIITLERRRSLTEGANLSGNKTDGVL* |
Ga0114993_107062211 | 3300009409 | Marine | LIRERPIYWRRRSNHPGNSQAKGPYIITLESRRSLTEGINLSGKKTDGV* |
Ga0114994_109770692 | 3300009420 | Marine | WRRRSNHPGNSQAKGPYIITLERRRSLTEGANLSGKKTDGV* |
Ga0115011_115598021 | 3300009593 | Marine | GRDQFNWRRRSNHPGNSQAKGPYIITLERRRSLTEGVKLSGTQTDGV* |
Ga0114933_107883981 | 3300009703 | Deep Subsurface | LQRRRSNHPGNSQAKGPIIITLERRLSLTEGVNLSGNKTEGA* |
Ga0115002_1000968112 | 3300009706 | Marine | WRRRSNHPGNSQAKGPYIITLERRRSLTEGVNLSGKKTDGV* |
Ga0133547_108091881 | 3300010883 | Marine | RSNHPGNSQAKGPYIITLERRLSLTEGANLSGKKTDGVS* |
Ga0138349_10065431 | 3300011312 | Deep Ocean | QFNWRRRSNHLGNSQAKGPYIITLERRLSLTEGVNLSGK* |
Ga0163108_105350612 | 3300012950 | Seawater | WRRRSNHPGNSQAKGPYIITLESRHGLTEGVNLSGN* |
Ga0163108_107981661 | 3300012950 | Seawater | RRRSNHPGNSQAKGPYIITLESRRCLTEGVNLSGN* |
Ga0163108_109669681 | 3300012950 | Seawater | NWRRRSNHPGNSQAKGPYIITLERRLSLTEGVNLSGNRTEGVY* |
Ga0211679_10370562 | 3300020263 | Marine | MQRRRSNHPGNSQAKGPCIITLERRLGLTEGVNLSGNKTEGVD |
Ga0211495_10271432 | 3300020268 | Marine | YIWRRRSNHPGNSQAKGPYIITLERRLSLTEGANLSGKKTDGV |
Ga0211562_10443091 | 3300020275 | Marine | DSYGRDQFNWRRRSNHLGNSQAKGPYIITLERRLGLTEGVNLSGK |
Ga0211568_10267201 | 3300020277 | Marine | RSNHPGNSQAKGPYIITLERRLSLTEGVNLSGNRTEGVY |
Ga0211563_10494311 | 3300020322 | Marine | WRRRSNHPGNSQAKGPYIITLERRLGLTEGVNLSGK |
Ga0211570_10110081 | 3300020344 | Marine | DQFNWRRRSNHPGNSQAKEPYIITLERRLDLTEGVNLSGNKTEGVD |
Ga0211570_10118171 | 3300020344 | Marine | NHPGNSQAKGPYIITLERRLSLTEGVNLSGNRTEGVY |
Ga0211611_10861732 | 3300020357 | Marine | LAPKEQRPGNSQAKGPYIMTLERRLSLTEGVNLSGN |
Ga0211660_100670291 | 3300020373 | Marine | WRRRSNHPGNSQAKGPYIITLERRLSLTEGVNLSGNRTEGVY |
Ga0211587_100982792 | 3300020411 | Marine | HPGNSQAKGPYIITLERRVDLTEGVNLSGKKTEGV |
Ga0211587_101125071 | 3300020411 | Marine | RSNHPGNSQAKGPYILTLERENILAEGANLSGTQTEGAKG |
Ga0211546_102855741 | 3300020462 | Marine | RRSNHPGNSQAKGPIEAQYSGKRLSSTEGVKLSGKKTEGAL |
Ga0211546_105405171 | 3300020462 | Marine | WRRRSNHPGNSQAKGPYIITLERRLSLTEGANLSGKKTDGV |
Ga0211585_100782404 | 3300020477 | Marine | PGNSQAKGPYIITLERRLSLTEGVNLSGTWTEGAG |
Ga0211585_100833804 | 3300020477 | Marine | RRRSNHPGNSQAKGPCILTLERENILAEGANLSGTQTEGVKG |
Ga0211585_102056981 | 3300020477 | Marine | YGRDQFNWRRRSNHPGNSQAKGPYIITLESRLCLTEGVNLSGT |
Ga0211503_100354991 | 3300020478 | Marine | WRRRSNHPGNSQAKGPYIITLERRLCLTEGVNLSGN |
Ga0211503_100403191 | 3300020478 | Marine | SNHPGNSQAKGPYILTLEREYILAEGANLSGTQTEGAKGLIWK |
Ga0211503_102874401 | 3300020478 | Marine | DWRRRSNHPGNSQAKGPYIITLERRLCLTEGVNLSGN |
Ga0211503_103521562 | 3300020478 | Marine | LAPKEQRPGNSQAKGPYIITLERRLGLTEGVNLSGTWTEGEDKELL |
Ga0211503_105537931 | 3300020478 | Marine | DWRRRSNHPGNSQAKGPYIITLERRVDLTEGVNLSGKKTEGV |
Ga0206678_103066152 | 3300021084 | Seawater | HPGNSQAKGPYILTLEREKFLAEGANLSGYKDRGGK |
Ga0187827_100417754 | 3300022227 | Seawater | MWRRRSNHPGNSQAKGPYILTLERDLFLAEGANLSGKQTEGVKELV |
Ga0207921_1032461 | 3300025191 | Deep Ocean | NWRRRSNHPGNSQAKGPCIITLERRLGLTEGVNLSGNKTEGVD |
Ga0207918_1054971 | 3300025196 | Deep Ocean | WRRRSNHPGNSQAKGPYIITLERRRSLTEGAKLSGNKTDGVF |
Ga0207918_1344181 | 3300025196 | Deep Ocean | ENSQRRRSNHLGNFQAKGPYIITLERRLSLTEGVNLSGNKTEGVY |
Ga0208059_10187131 | 3300025198 | Deep Ocean | NHLGNFQAKGPYIITLERRLSLTEGVNLSGNKTEGVY |
Ga0208058_10160281 | 3300025210 | Deep Ocean | NHLGNFQAKGPYIITLERRRSLTEGVNLSGNKTEGVY |
Ga0207920_10401881 | 3300025215 | Deep Ocean | MQRRRSNHPGNSQAKGPYIITLERRLGLTEGVNLSGNKTEGVD |
Ga0208335_10169772 | 3300025243 | Deep Ocean | SNHLGNFQAKGPYIITLERRLSLTEGVNLSGNKTEGVY |
Ga0208640_10946722 | 3300026208 | Marine | MWRRRSNHPGNSQAKGPYILTLERDLFLAEGANLSGKQTEGVKE |
Ga0208522_10680132 | 3300026254 | Marine | PYGRDQFYWRRRSNHPGNSQAKGPYIITLESRHSLTEGVNLSGN |
Ga0207992_11517661 | 3300026263 | Marine | IIYITKCHTYGRDQFDWRRRSNHPGNSQAKGPYIITLERRLSLTEGVNLSGNQTEGV |
Ga0208765_11686681 | 3300026265 | Marine | YILYGRDQFDWRRRSNHPGNSQAKGPYIITLERRLSLTEGVNLSGN |
Ga0208766_10173151 | 3300026269 | Marine | NWRRRSNHPGNSQAKGPYIITLERRLCLTEGVNLSGNRTEGAD |
Ga0208411_10077911 | 3300026279 | Marine | IIYRRKCQTYGRDQFDWRRRSNHPGNSQAKGPYIITLESRHSLTEGVNLSGN |
Ga0208764_101672471 | 3300026321 | Marine | WRRRSNHPGNSQAKGPYIITLESRHGLTEGVNLSGN |
Ga0209089_104646081 | 3300027838 | Marine | LIRERPIYWRRRSNHPGNSQAKGPYIITLESRRSLTEGINLSGKKTDGV |
Ga0209403_100642281 | 3300027839 | Marine | WRRRSNHPGNSQAKGPYIITLERRRSLTEGVNLSGKKTDGV |
Ga0209402_105492012 | 3300027847 | Marine | TLIRERPIYWRRRSNHPGNSQAKGPYIITLESRRSLTEGINLSGKKTDGV |
Ga0257109_12355981 | 3300028487 | Marine | HLGNFQAKGPYIITLERRLSLTEGVNLSGNKTEGVY |
Ga0257112_101767102 | 3300028489 | Marine | RRSNHPGNSQAKGPYIITLERRRSLTEGAKLSGNKTEGVF |
Ga0310120_101517012 | 3300031803 | Marine | MQRRRSNHPGNSQAKGPCIITLERRLGLTEGINLSGNKTE |
Ga0310124_107775102 | 3300031804 | Marine | MQRRRSNHPGNSQAKGPCIITLERRLGLTEGINLSGNKTEGVD |
Ga0310344_102172682 | 3300032006 | Seawater | LQRRRSNHPGNSQAKGPIIMTLERRLSLTEGVNLSGNKTEGA |
Ga0310344_107899231 | 3300032006 | Seawater | QRRRSNHPGNSQAKGPHIITLERRLCLTEGVNLSGN |
Ga0315329_104114002 | 3300032048 | Seawater | RRRSNHPGNSQAKGPYIITLESRHCLTEGVNLSGN |
Ga0310345_109420372 | 3300032278 | Seawater | FDWRRRSKHPGNSQAKGPCIITLESRRKSLTEGVNLSGTRTEGAK |
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