Overview
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300005286 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0063773 | Gp0052323 | Ga0065721 |
| Sample Name | Mesophilic microbial community from rice straw/compost enrichment Sample: eDNA_1 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 1032006118 |
| Sequencing Scaffolds | 17 |
| Novel Protein Genes | 19 |
| Associated Families | 17 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria | 8 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 2 |
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria | 1 |
| Not Available | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Microthrixaceae → Candidatus Microthrix → Candidatus Microthrix parvicella | 1 |
Ecosystem and Geography
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Rice-Straw Enriched Compost Microbial Community From Berkeley |
| Type | Engineered |
| Taxonomy | Engineered → Solid Waste → Grass → Composting → Bioreactor → Rice-Straw Enriched Compost → Rice-Straw Enriched Compost Microbial Community From Berkeley |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Davis, California, USA | |||||||
| Coordinates | Lat. (o) | 38.5402727 | Long. (o) | -121.7500776 | Alt. (m) | N/A | Depth (m) | N/A |
| Location on Map | ||||||||
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