Metagenome Family F055517

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F055517
Family Type	Metagenome
Number of Sequences	138
Average Sequence Length	79 residues
Representative Sequence	MPDMQARLKPEYSLRYPRLSAGVWYDVSPIFPGVTVRRVDIFGRRITRLKTARDFETVQATHFEFRVDAVQQQEGQLATA
Number of Associated Samples	98
Number of Associated Scaffolds	138

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	82.61 %
% of genes near scaffold ends (potentially truncated)	23.19 %
% of genes from short scaffolds (< 2000 bps)	74.64 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.66

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (84.058 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (17.391 % of family members)
Environment Ontology (ENVO)	Unclassified (27.536 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (39.855 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 11.11% β-sheet: 26.85% Coil/Unstructured: 62.04%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.66
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.66
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 138 Family Scaffolds
PF01336	tRNA_anti-codon	32.61
PF00474	SSF	9.42
PF01566	Nramp	7.25
PF00271	Helicase_C	5.07
PF01186	Lysyl_oxidase	2.17
PF04519	Bactofilin	2.17
PF07691	PA14	1.45
PF06966	DUF1295	1.45
PF13628	DUF4142	0.72
PF03793	PASTA	0.72
PF01182	Glucosamine_iso	0.72
PF12704	MacB_PCD	0.72
PF03929	PepSY_TM	0.72
PF13229	Beta_helix	0.72
PF02743	dCache_1	0.72
PF03819	MazG	0.72
PF00383	dCMP_cyt_deam_1	0.72
PF13432	TPR_16	0.72
PF11086	DUF2878	0.72
PF01642	MM_CoA_mutase	0.72

COG ID	Name	Functional Category	% Frequency in 138 Family Scaffolds
COG1914	Mn2+ or Fe2+ transporter, NRAMP family	Inorganic ion transport and metabolism [P]	7.25
COG1664	Cytoskeletal protein CcmA, bactofilin family	Cytoskeleton [Z]	2.17
COG2020	Protein-S-isoprenylcysteine O-methyltransferase Ste14	Posttranslational modification, protein turnover, chaperones [O]	1.45
COG3752	Steroid 5-alpha reductase family enzyme	General function prediction only [R]	1.45
COG0363	6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase	Carbohydrate transport and metabolism [G]	0.72
COG1884	Methylmalonyl-CoA mutase, N-terminal domain/subunit	Lipid transport and metabolism [I]	0.72
COG2972	Sensor histidine kinase YesM	Signal transduction mechanisms [T]	0.72
COG3182	PepSY-associated TM region	Function unknown [S]	0.72
COG3295	Uncharacterized conserved protein	Function unknown [S]	0.72

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	84.06 %
Unclassified	root	N/A	15.94 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	84.06 %
Unclassified	root	N/A	15.94 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	84.06 %
Unclassified	root	N/A	15.94 %

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	24.64 %
Unclassified	root	N/A	15.94 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.17 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.72 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.72 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	24.64 %
Unclassified	root	N/A	15.94 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.17 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.72 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	15.94 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	7.25 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	2.17 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.17 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.72 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	15.94 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	7.25 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2.17 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.17 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.72 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	15.94 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	7.25 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2.17 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.17 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.72 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	15.94 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2.17 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.17 %
Gemmatirosa	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa	2.90 %
Gemmatimonas	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas	1.45 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.72 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	15.94 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2.17 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.17 %
Gemmatirosa kalamazoonesis	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	2.90 %
unclassified Gemmatimonas	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → unclassified Gemmatimonas	0.72 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.72 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	15.94 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2.17 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.17 %
Gemmatirosa kalamazoonesis	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	2.90 %
Gemmatimonas sp.	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → unclassified Gemmatimonas → Gemmatimonas sp.	0.72 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.72 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.72 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2140918013\|NODE_10761_length_1567_cov_9.148692	Not Available	1599	Open in IMG/M
2162886013\|SwBSRL2_contig_12527429	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	949	Open in IMG/M
3300000787\|JGI11643J11755_11659192	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300000956\|JGI10216J12902_103263289	All Organisms → cellular organisms → Bacteria	1775	Open in IMG/M
3300000956\|JGI10216J12902_107750870	Not Available	1016	Open in IMG/M
3300003278\|U2draft_1001995	All Organisms → cellular organisms → Bacteria	15874	Open in IMG/M
3300004114\|Ga0062593_100127918	All Organisms → cellular organisms → Bacteria	1870	Open in IMG/M
3300004156\|Ga0062589_102639054	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M
3300004266\|Ga0055457_10213913	All Organisms → cellular organisms → Bacteria	571	Open in IMG/M
3300004463\|Ga0063356_101299123	Not Available	1064	Open in IMG/M
3300004463\|Ga0063356_101762908	Not Available	928	Open in IMG/M
3300004463\|Ga0063356_103175819	Not Available	708	Open in IMG/M
3300004463\|Ga0063356_103507758	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	675	Open in IMG/M
3300004463\|Ga0063356_106236542	All Organisms → cellular organisms → Bacteria	511	Open in IMG/M
3300004480\|Ga0062592_100002260	All Organisms → cellular organisms → Bacteria → Proteobacteria	5774	Open in IMG/M
3300004480\|Ga0062592_100144914	All Organisms → cellular organisms → Bacteria	1578	Open in IMG/M
3300004480\|Ga0062592_100198779	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1411	Open in IMG/M
3300004480\|Ga0062592_100862931	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	811	Open in IMG/M
3300004643\|Ga0062591_101457916	All Organisms → cellular organisms → Bacteria	682	Open in IMG/M
3300005186\|Ga0066676_10230920	All Organisms → cellular organisms → Bacteria	1201	Open in IMG/M
3300005286\|Ga0065721_10187717	Not Available	935	Open in IMG/M
3300005332\|Ga0066388_103577404	Not Available	793	Open in IMG/M
3300005353\|Ga0070669_101881511	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M
3300005367\|Ga0070667_100294809	All Organisms → cellular organisms → Bacteria	1459	Open in IMG/M
3300005438\|Ga0070701_10622241	All Organisms → cellular organisms → Bacteria	717	Open in IMG/M
3300005444\|Ga0070694_100494388	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	972	Open in IMG/M
3300005445\|Ga0070708_100081702	All Organisms → cellular organisms → Bacteria	2926	Open in IMG/M
3300005467\|Ga0070706_100051392	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	3804	Open in IMG/M
3300005467\|Ga0070706_101144307	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	716	Open in IMG/M
3300005468\|Ga0070707_100138983	All Organisms → cellular organisms → Bacteria	2364	Open in IMG/M
3300005468\|Ga0070707_100265336	All Organisms → cellular organisms → Bacteria	1670	Open in IMG/M
3300005468\|Ga0070707_100332438	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1476	Open in IMG/M
3300005471\|Ga0070698_100931620	All Organisms → cellular organisms → Bacteria	815	Open in IMG/M
3300005518\|Ga0070699_100000036	All Organisms → cellular organisms → Bacteria	133816	Open in IMG/M
3300005518\|Ga0070699_100001217	All Organisms → cellular organisms → Bacteria	23786	Open in IMG/M
3300005577\|Ga0068857_101664553	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	623	Open in IMG/M
3300005577\|Ga0068857_101953852	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	575	Open in IMG/M
3300006049\|Ga0075417_10070395	All Organisms → cellular organisms → Bacteria	1548	Open in IMG/M
3300006049\|Ga0075417_10338467	All Organisms → cellular organisms → Bacteria	735	Open in IMG/M
3300006844\|Ga0075428_102303575	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300006845\|Ga0075421_100429016	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1582	Open in IMG/M
3300006845\|Ga0075421_102450241	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300006847\|Ga0075431_100906149	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	851	Open in IMG/M
3300006852\|Ga0075433_10864178	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	789	Open in IMG/M
3300006853\|Ga0075420_101044278	All Organisms → cellular organisms → Bacteria	703	Open in IMG/M
3300006854\|Ga0075425_100034888	All Organisms → cellular organisms → Bacteria	5601	Open in IMG/M
3300006854\|Ga0075425_100087715	All Organisms → cellular organisms → Bacteria	3525	Open in IMG/M
3300006854\|Ga0075425_100490108	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1415	Open in IMG/M
3300006865\|Ga0073934_10107124	All Organisms → cellular organisms → Bacteria	2108	Open in IMG/M
3300006871\|Ga0075434_100027227	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	5610	Open in IMG/M
3300006871\|Ga0075434_100290859	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1654	Open in IMG/M
3300006876\|Ga0079217_10021439	All Organisms → cellular organisms → Bacteria	2281	Open in IMG/M
3300006880\|Ga0075429_100196883	Not Available	1765	Open in IMG/M
3300006880\|Ga0075429_100223480	All Organisms → cellular organisms → Bacteria	1649	Open in IMG/M
3300006894\|Ga0079215_10277055	Not Available	909	Open in IMG/M
3300006914\|Ga0075436_100890307	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	665	Open in IMG/M
3300006918\|Ga0079216_10165413	Not Available	1171	Open in IMG/M
3300007004\|Ga0079218_10184988	All Organisms → cellular organisms → Bacteria	1569	Open in IMG/M
3300007769\|Ga0102952_1152503	All Organisms → cellular organisms → Bacteria	721	Open in IMG/M
3300009012\|Ga0066710_100032259	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	6127	Open in IMG/M
3300009012\|Ga0066710_100595822	All Organisms → cellular organisms → Bacteria	1676	Open in IMG/M
3300009137\|Ga0066709_100836495	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1337	Open in IMG/M
3300009147\|Ga0114129_10186137	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → unclassified Gemmatimonas → Gemmatimonas sp.	2822	Open in IMG/M
3300009147\|Ga0114129_12932804	All Organisms → cellular organisms → Bacteria	563	Open in IMG/M
3300009162\|Ga0075423_10708031	All Organisms → cellular organisms → Bacteria	1063	Open in IMG/M
3300009162\|Ga0075423_10896639	All Organisms → cellular organisms → Bacteria	940	Open in IMG/M
3300009873\|Ga0131077_10155950	All Organisms → cellular organisms → Bacteria	2547	Open in IMG/M
3300009873\|Ga0131077_10839146	All Organisms → cellular organisms → Bacteria	799	Open in IMG/M
3300010333\|Ga0134080_10560248	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	551	Open in IMG/M
3300010356\|Ga0116237_10145443	All Organisms → cellular organisms → Bacteria	2322	Open in IMG/M
3300010391\|Ga0136847_10291990	All Organisms → cellular organisms → Bacteria	534	Open in IMG/M
3300010391\|Ga0136847_11055450	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1466	Open in IMG/M
3300010391\|Ga0136847_11555459	All Organisms → cellular organisms → Bacteria	7987	Open in IMG/M
3300010391\|Ga0136847_11770967	All Organisms → cellular organisms → Bacteria	1574	Open in IMG/M
3300010400\|Ga0134122_11301808	All Organisms → cellular organisms → Bacteria	734	Open in IMG/M
3300010400\|Ga0134122_12452775	All Organisms → cellular organisms → Bacteria	570	Open in IMG/M
3300010401\|Ga0134121_10253409	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1541	Open in IMG/M
3300010403\|Ga0134123_11509440	All Organisms → cellular organisms → Bacteria	716	Open in IMG/M
3300011419\|Ga0137446_1001221	All Organisms → cellular organisms → Bacteria	3675	Open in IMG/M
3300012360\|Ga0137375_10094803	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	3061	Open in IMG/M
3300012360\|Ga0137375_10252323	Not Available	1628	Open in IMG/M
3300014262\|Ga0075301_1074354	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	697	Open in IMG/M
3300014877\|Ga0180074_1019466	Not Available	1314	Open in IMG/M
3300014883\|Ga0180086_1104450	Not Available	722	Open in IMG/M
3300018053\|Ga0184626_10372827	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300018059\|Ga0184615_10063897	Not Available	2055	Open in IMG/M
3300018063\|Ga0184637_10420128	All Organisms → cellular organisms → Bacteria	793	Open in IMG/M
3300018068\|Ga0184636_1148887	All Organisms → cellular organisms → Bacteria	821	Open in IMG/M
3300018068\|Ga0184636_1169686	All Organisms → cellular organisms → Bacteria	769	Open in IMG/M
3300018079\|Ga0184627_10029504	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas	2759	Open in IMG/M
3300018081\|Ga0184625_10611274	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M
3300018084\|Ga0184629_10065256	Not Available	1704	Open in IMG/M
3300018422\|Ga0190265_10333066	Not Available	1599	Open in IMG/M
3300019360\|Ga0187894_10043851	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	2699	Open in IMG/M
3300019458\|Ga0187892_10000145	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	175977	Open in IMG/M
3300019458\|Ga0187892_10055979	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	2666	Open in IMG/M
3300019458\|Ga0187892_10097551	All Organisms → cellular organisms → Bacteria	1768	Open in IMG/M
3300019458\|Ga0187892_10326266	All Organisms → cellular organisms → Bacteria	755	Open in IMG/M
3300019458\|Ga0187892_10358868	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	706	Open in IMG/M
3300019487\|Ga0187893_10188503	Not Available	1605	Open in IMG/M
3300020193\|Ga0194131_10124731	All Organisms → cellular organisms → Bacteria → Proteobacteria	1329	Open in IMG/M
3300020214\|Ga0194132_10001180	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	52900	Open in IMG/M
3300021344\|Ga0193719_10252228	All Organisms → cellular organisms → Bacteria	746	Open in IMG/M
3300025159\|Ga0209619_10343840	All Organisms → cellular organisms → Bacteria	782	Open in IMG/M
3300025160\|Ga0209109_10040110	All Organisms → cellular organisms → Bacteria	2510	Open in IMG/M
3300025174\|Ga0209324_10057178	All Organisms → cellular organisms → Bacteria	2684	Open in IMG/M
3300025324\|Ga0209640_10005148	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	11438	Open in IMG/M
3300025324\|Ga0209640_10954188	All Organisms → cellular organisms → Bacteria	664	Open in IMG/M
3300025327\|Ga0209751_10383147	Not Available	1170	Open in IMG/M
3300025327\|Ga0209751_11327480	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300025910\|Ga0207684_10339129	All Organisms → cellular organisms → Bacteria	1294	Open in IMG/M
3300025922\|Ga0207646_10611718	All Organisms → cellular organisms → Bacteria	978	Open in IMG/M
3300025922\|Ga0207646_11663730	All Organisms → cellular organisms → Bacteria	549	Open in IMG/M
3300025986\|Ga0207658_10460226	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1127	Open in IMG/M
3300026116\|Ga0207674_10405294	All Organisms → cellular organisms → Bacteria	1318	Open in IMG/M
3300027637\|Ga0209818_1000203	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	13873	Open in IMG/M
3300027873\|Ga0209814_10084214	All Organisms → cellular organisms → Bacteria	1342	Open in IMG/M
3300027880\|Ga0209481_10006847	All Organisms → cellular organisms → Bacteria → Proteobacteria	4848	Open in IMG/M
3300027880\|Ga0209481_10053317	All Organisms → cellular organisms → Bacteria	1878	Open in IMG/M
3300027886\|Ga0209486_10000212	All Organisms → cellular organisms → Bacteria	27844	Open in IMG/M
3300027909\|Ga0209382_11668954	All Organisms → cellular organisms → Bacteria	627	Open in IMG/M
3300028380\|Ga0268265_10213228	Not Available	1684	Open in IMG/M
3300028380\|Ga0268265_12094751	All Organisms → cellular organisms → Bacteria	573	Open in IMG/M
(restricted) 3300031150\|Ga0255311_1005171	All Organisms → cellular organisms → Bacteria	2545	Open in IMG/M
(restricted) 3300031150\|Ga0255311_1018584	Not Available	1424	Open in IMG/M
(restricted) 3300031197\|Ga0255310_10138907	Not Available	664	Open in IMG/M
3300031231\|Ga0170824_128114354	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	505	Open in IMG/M
(restricted) 3300031248\|Ga0255312_1020232	All Organisms → cellular organisms → Bacteria	1589	Open in IMG/M
(restricted) 3300031248\|Ga0255312_1125866	All Organisms → cellular organisms → Bacteria	632	Open in IMG/M
3300031548\|Ga0307408_100017043	All Organisms → cellular organisms → Bacteria	4859	Open in IMG/M
3300031716\|Ga0310813_10034574	All Organisms → cellular organisms → Bacteria	3605	Open in IMG/M
3300031965\|Ga0326597_11066314	All Organisms → cellular organisms → Bacteria	810	Open in IMG/M
3300032002\|Ga0307416_102978612	All Organisms → cellular organisms → Bacteria	567	Open in IMG/M
3300032829\|Ga0335070_11782910	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300033407\|Ga0214472_10657252	All Organisms → cellular organisms → Bacteria	957	Open in IMG/M
3300033412\|Ga0310810_10115816	All Organisms → cellular organisms → Bacteria	3171	Open in IMG/M
3300033433\|Ga0326726_10461902	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1210	Open in IMG/M
3300033513\|Ga0316628_101101930	Not Available	1056	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	68.12%
Host-Associated	Host-Associated	28.26%
Engineered	Engineered	3.62%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	54.35%
Plants	Host-Associated → Plants	28.26%
Aquatic	Environmental → Aquatic	13.77%
Wastewater	Engineered → Wastewater	2.17%
Solid Waste	Engineered → Solid Waste	0.72%
Bioreactor	Engineered → Bioreactor	0.72%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	48.55%
Rhizosphere	Host-Associated → Plants → Rhizosphere	21.01%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.25%
Sediment	Environmental → Aquatic → Sediment	7.97%
Cave	Environmental → Terrestrial → Cave	5.07%
Freshwater	Environmental → Aquatic → Freshwater	4.35%
Activated Sludge	Engineered → Wastewater → Activated Sludge	1.45%
Marine	Environmental → Aquatic → Marine	0.72%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.72%
Peat	Environmental → Terrestrial → Peat	0.72%
Grass	Engineered → Solid Waste → Grass	0.72%
Anaerobic Digestor	Engineered → Wastewater → Anaerobic Digestor	0.72%
Unclassified	Engineered → Bioreactor → Unclassified	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	28.26%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	18.84%
Loam	Environmental → Terrestrial → Soil → Loam	13.77%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.25%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	7.97%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	5.07%
Lake	Environmental → Aquatic → Freshwater → Lake	4.35%
Sand	Environmental → Terrestrial → Soil → Sand	3.62%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.90%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.17%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified	1.45%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.72%
Sediment	Environmental → Aquatic → Thermal Springs → Sediment	0.72%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.72%
Composting	Engineered → Solid Waste → Grass → Composting	0.72%
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified	0.72%
Unclassified	Engineered → Bioreactor → Unclassified → Unclassified	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	18.84%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	11.59%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.14%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	9.42%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.25%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	7.97%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.80%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	5.07%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	3.62%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	2.90%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.90%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	2.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.17%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	1.45%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified	1.45%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.72%
Unclassified	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified	0.72%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.72%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.72%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.72%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.72%
Bioreactor	Engineered → Solid Waste → Grass → Composting → Bioreactor	0.72%
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified	0.72%
Unclassified	Engineered → Bioreactor → Unclassified → Unclassified → Unclassified	0.72%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	17.39%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	10.14%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	5.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	5.07%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	4.35%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.62%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	3.62%
Bio-Ooze	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Bio-Ooze	3.62%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	3.62%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment	2.90%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.90%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	2.90%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	2.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.17%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.17%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.17%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.17%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	1.45%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.45%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.45%
Microbial Mat On Rocks	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks	1.45%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.45%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.45%
Wastewater	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Wastewater	1.45%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.72%
Hot Spring Sediment	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment	0.72%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.72%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.72%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.72%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.72%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.72%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.72%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.72%
Rice-Straw Enriched Compost	Engineered → Solid Waste → Grass → Composting → Bioreactor → Rice-Straw Enriched Compost	0.72%
Anaerobic Digestor Sludge	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge	0.72%
Down-Flow Hanging Sponge Reactor	Engineered → Bioreactor → Unclassified → Unclassified → Unclassified → Down-Flow Hanging Sponge Reactor	0.72%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2140918013	Soil microbial communities from Great Prairies - Iowa soil (MSU Assemblies)	Environmental	Open in IMG/M
2162886013	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003278	Down-flow hanging sponge reactor microbial communities from the University of Illinois at Urbana-Champaign, USA - U2-648F-DHS	Engineered	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004266	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_ThreeSqA_D1	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005286	Mesophilic microbial community from rice straw/compost enrichment Sample: eDNA_1	Engineered	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006865	Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300007769	Soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_C_D1_MG	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009873	Activated sludge microbial diversity in wastewater treatment plant from Taiwan - Wenshan plant	Engineered	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010356	AD_USDEca	Engineered	Open in IMG/M
3300010391	Freshwater sediment microbial communities from Lake Superior, USA - Station SU-17. Combined Assembly of Gp0155404, Gp0155335, Gp0155336, Gp0155336, Gp0155403, Gp0155406	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011419	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT357_2	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300014262	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleA_D1	Environmental	Open in IMG/M
3300014877	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT366_16_10D	Environmental	Open in IMG/M
3300014883	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT760_16_10D	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018059	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_coex	Environmental	Open in IMG/M
3300018063	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2	Environmental	Open in IMG/M
3300018068	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_90_b2	Environmental	Open in IMG/M
3300018079	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b1	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018084	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300019360	White microbial mat communities from a lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - GBC170108-1 metaG	Environmental	Open in IMG/M
3300019458	Bio-ooze microbial communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-3 metaG	Environmental	Open in IMG/M
3300019487	White microbial mat communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-4 metaG	Environmental	Open in IMG/M
3300020193	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015053 Kigoma Offshore 120m	Environmental	Open in IMG/M
3300020214	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015054 Kigoma Offshore 80m	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300025159	Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 3	Environmental	Open in IMG/M
3300025160	Soil microbial communities from Rifle, Colorado, USA - sediment 10ft 2	Environmental	Open in IMG/M
3300025174	Soil microbial communities from Rifle, Colorado, USA - sediment 19ft 3	Environmental	Open in IMG/M
3300025324	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_1 (SPAdes)	Environmental	Open in IMG/M
3300025327	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_1 (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027637	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200 (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031150 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH4_T0_E4	Environmental	Open in IMG/M
3300031197 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH1_T0_E1	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031248 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH5_T0_E5	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031965	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185	Environmental	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300033407	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT140D175	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
Iowa-Corn-GraphCirc_01441920	2140918013	Soil	MPDMQARLKHEYSLRYPRLSAGVWYDVSPIFPGVTVRRVDIFGRRITRLKTARDFETVQATHFEFRLETAQQHEDQLATA
SwBSRL2_0747.00004570	2162886013	Switchgrass Rhizosphere	MTSDMQARLKPEFSLRYPRLSAGVWYDVSPIFPGVTVRRVDIFGRRIARLKTSRDFETVQAAHFEFIPRKVEQGELASA
JGI11643J11755_116591921	3300000787	Soil	MPDMQARLKPEYSLRYPRLSAGVWYDVSPIFPGVTVRRVDIFGRRITRLKTARDFETVQATHFE
JGI10216J12902_1032632892	3300000956	Soil	MPDMQARLKPEYSLRYPRLSAGVWYDVSPIFPGVTVRRVDIFGRRITRLKTARDFETVQATHFEFRVDAVPQEQDGHLASA*
JGI10216J12902_1077508702	3300000956	Soil	MREMQARLKPEYSLRYPRLSAGVWYGVSPIFPGVTVRRVDIFGRRITRLKTARDFETVQSSHFEFRAEVTQEQEGQMATA*
U2draft_100199514	3300003278	Down-Flow Hanging Sponge Reactor	MSSQMQARLKPEHTLRYPRLSANMWYDVSPIFPGVTTRRVDIFGRRITRIRTARDYETVQAAHFEFRERPVEEEIRQPAVAM*
Ga0062593_1001279183	3300004114	Soil	MAMMQACLKPEFAPRYPRLNSSIWYEVAPIFPGVTIRRVDMFGRRVARLKTARDFETVQAAHFEFRPRPDTADELATA*
Ga0062589_1026390541	3300004156	Soil	MREMQARLKPEYSLRYPRLSAGVWYGVSPIFPGVTVRRVDIFGRRITRLKTARDFETVQSSHFEFRVEAAQEQEDQMATA*
Ga0055457_102139131	3300004266	Natural And Restored Wetlands	MASPMMQARLKPEHTLRYPRLSANMWYDVSPIFPGVTTRRVDIFGRRITRIRTTRDYETVQATHFDFRERPVEEPVGVS*
Ga0063356_1012991231	3300004463	Arabidopsis Thaliana Rhizosphere	MTSDMQARLKPEFSLRYPRLSAGVWYDVSPIFPGVTVRRVDIFGRRIARLKTSRDFETVQAAHFEFIPRKVEQGELASA*
Ga0063356_1017629081	3300004463	Arabidopsis Thaliana Rhizosphere	MPDMQARLKPEFSLRYPRLSAGVWYEVAPIFPGVTVRRVDIFGRRITRLKTARDFETVQALHFDFRQQVVAEQGATA*
Ga0063356_1031758192	3300004463	Arabidopsis Thaliana Rhizosphere	MPDMQARLKPEYSLRYPRLSAGVWYDVSPIFPGVTVRRVDIFGRRITRLKTARDYETVQATHFEFRVDA
Ga0063356_1035077581	3300004463	Arabidopsis Thaliana Rhizosphere	KPEFAPRYPRLNSSIWYEVAPIFPGVTIRRVDMFGRRVARLKTARDFETVQAAHFEFRPRPDTADELATA*
Ga0063356_1062365422	3300004463	Arabidopsis Thaliana Rhizosphere	YPRLSAGVWYGVSPIFPGVTVRRVDIFGRRITRLKTARDFETVQASHFEFRAEVTQEQEGQLATA*
Ga0062592_1000022608	3300004480	Soil	MPDMQARLKPEYSLRYPRLSAGVWYDVSPIFPGVTVRRVDIFGRRITRLKTARDFETVQATHFEFRLETAQQHEDQLATA*
Ga0062592_1001449143	3300004480	Soil	MRDMQARLKPEYSLRYPRLSAGVWYYVAPVFPGVKERRVDVFGRRITRLKTARDFETVQAAHFEFRLESAHQQEGQLTV*
Ga0062592_1001987792	3300004480	Soil	MATMQACLKPEFAPRYPRLNSSVWYDVAPIFPGVTIRRVDMFGRRVARLKTARDFETVQAAHFEFRTRAENADNTEQLVTA*
Ga0062592_1008629312	3300004480	Soil	RKLTLSAYSNLAAGSRDANYTSRDLTLPRDPMPDMQARLKPEYSLRYPRLSAGVWYDVSPIFPGVTVRRVDIFGRRITRLKTARDYETVQATHFEFRVDAVQQQDGQMATA*
Ga0062591_1014579162	3300004643	Soil	MSMMQARLKPEHTLRYPRLSPHVWYEVSPIFPGVTTRRVDIFGRRITRIKTARDYETVQSAHFEFRERPVEEEVVQQV*
Ga0066676_102309202	3300005186	Soil	MSEMQARLKPEFSLRYPRLSAGVWYDVSPIFPGVTVRRVDIFGRRITRLKTTRDFETVQASHFEFRPRAAEVEAEKVMA*
Ga0065721_101877172	3300005286	Rice-Straw Enriched Compost	MASQMQARLKSEHTLRYPRLSPNMWYDVSPIFPGVTTRRVDIFGRRITRIRTARDYETVQAAHFEFRERPVEEEATVSA*
Ga0066388_1035774042	3300005332	Tropical Forest Soil	LAFSSITYRSGEFGDVIALMQARLKPEHTLRYPRLSPHVWYEVSPIFPGVTTRRVDIFGRRITRIKTARDYETVQSAHFEFRERPVEEEATSPA*
Ga0070669_1018815111	3300005353	Switchgrass Rhizosphere	MREMQARLKPEYSLRYPRLSAGVWYGVSPIFPGVTVRRVDIFGRRITRLKTARDFETVQSSHFEFRVEAAQEQED
Ga0070667_1002948092	3300005367	Switchgrass Rhizosphere	MPDMQARLKPEFSLRYPRLSAGVWYDVSPIFPGVTVRRVDIFGRRIARLKTARDFETVQAAHFEFGSARGQEAERATA*
Ga0070701_106222411	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MPEMQARLKPEFSLRYPRLSAGVWYDVSPIFPGVTVRRVDIFGRRIARLKTTRDFETVQAAHFEFGSAQAQVAERATA*
Ga0070694_1004943882	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MTSDMQARLKPEFSLRYPRLSAGVWYDVSPIFPGVTVRRVDIFGRRIARLKTSRDFETVQAAHFEFIPRKVGQGELASA*
Ga0070708_1000817022	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MSDMQARLKPEFSLRYPRLSAGVWYDVSPIFPGVTVRRVDIFGRRISRLKTARDFETVQAAHFEFRARSAAATEGELVSA*
Ga0070706_1000513924	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MSDMQARLKPEFSLRYPRLSAGVWYDVSPIFPGVTVRRVDIFGRRISRLKTARDFETVQAAHFEFRPRTAAASEAELVSA*
Ga0070706_1011443072	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	YSTLSDTRLVLLAPPGETMAIMQAALKPEFALRYPRLSSGVWYEVAPIFPGVTIRRVDMFGRRVARLKTARDFETVQAAHFEFRPRPAEELATA*
Ga0070707_1001389832	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MANMHACLKPEFALRYPRLTSGVWYEVAPIFPGVTIRRVDMFGRRVARLKTARDFETVQAAHFEFRKDMANELTTA*
Ga0070707_1002653361	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MAMQACLKPEFAPRYPRLNSSVWYEVAPIFPGVTIRRVDMFGRRVARLKTARDFETVQAAHFEFRPRSETADEIAMA*
Ga0070707_1003324381	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	RLVLLAPPGETMAIMQAALKPEFALRYPRLSSGVWYEVAPIFPGVTIRRVDMFGRRVARLKTARDFETVQAAHFEFRPRPAEELATA*
Ga0070698_1009316202	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MQARLKPEHTLRYPRLSPHVWYEVLPIFPGVTTRRVDIFGRRITRIKTARDYETVQSAHFEFRERPVEEEVTSPA*
Ga0070699_10000003620	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MSDMQARLKPEYSLKYPRLRAGVWYYVSPVFPGVKERRVDVFGRRITRLKTSRDFETVQAAHFEFRSEASAHQEEDQLETA*
Ga0070699_10000121717	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MRDMQARLKPEHSLRYPRLSAGVWYDVSPIFPGVTVRRVDIFGRRITRLKTARDFETVQASHFEFRAEATQQQEGQLATA*
Ga0068857_1016645531	3300005577	Corn Rhizosphere	KPEYSLRYPRLSAGVWYDVSPIFPGVTVRRVDIFGRRITRLKTARDFETVQATHFEFRLETAQQQEDQLATA*
Ga0068857_1019538522	3300005577	Corn Rhizosphere	RLSSQVKAMAMMQACLKPEFAPRYPRLNSSIWYEVAPIFPGVTIRRVDMFGRRVARLKTARDFETVQAAHFEFRPRPDTADELATA*
Ga0075417_100703952	3300006049	Populus Rhizosphere	MPEMQARLKPEYSLRYPRLKAGVWYYVAPVFPGVKERRVDVFGRRITRLKTARDFETVQAAHFEFRMESAHQQEDQLTA*
Ga0075417_103384672	3300006049	Populus Rhizosphere	MPDMQARLKPEYSLRYPRLSAGVWYDVSPIFPGVTVRRVDIFGRRITRLKTARDFETVQATHFEFRLETAQQHEDQLASA*
Ga0075428_1023035751	3300006844	Populus Rhizosphere	MPDMQARLKPEYSLRYPRLSAGVWYDVSPIFPGVTVRRVDIFGRRITRLKTARDYETVQATHFEFRMDASQEQTED
Ga0075421_1004290162	3300006845	Populus Rhizosphere	MISDMQARLKPEFQLRYPRLSAGVWYDVSPIFPGVTVRRVDIFGRRIARLKTSRDFETVQAAHFEFLPRKTEQGELASA*
Ga0075421_1024502411	3300006845	Populus Rhizosphere	MPDMQARLKPEYSLRYPRLSAGVWYDVSPIFPGVTVRRVDIFGRRITRLKTARDYETVQATHFEFRMDASQEQTEDGRMA
Ga0075431_1009061492	3300006847	Populus Rhizosphere	DMQARLKPEFSLRYPRLSAGVWYDVSPIFPGVTVRRVDIFGRRIARLKTSRDFETVQAAHFEFIPRKVEQGELASA*
Ga0075433_108641782	3300006852	Populus Rhizosphere	AGYPRLPNTMLVQLAQVRDMNNMHASLKPEFALRYPRLSTGVWYEVAPIFPGVTIRRVDMFGRRVARIKTDRDFETVQAAHFEFRKPTVDELAPAQS*
Ga0075420_1010442781	3300006853	Populus Rhizosphere	MPDMQARLKPEYSLRYPRLSAGVWYDVSPIFPGVTVRRVDIFGRRITRLKTARDYETVQATHFEFRVEAVDQQDQMATA*
Ga0075425_1000348882	3300006854	Populus Rhizosphere	MAMQACLKPEFAARYPRLNSSVWYEVAPIFPGVTIRRVDMFGRRVARLKTARDFETVQAAHFEFRPVESTATA*
Ga0075425_1000877152	3300006854	Populus Rhizosphere	MNNMHASLKPEFALRYPRLSTGVWYEVAPIFPGVTIRRVDMFGRRVARIKTARDFETVQAAHFEFRKPTVEELATATA*
Ga0075425_1004901082	3300006854	Populus Rhizosphere	MQARLKPEHTLRYPRLSPHVWYEVSPIFPGVTTRRVDIFGRRITRIKTARDYETVQSAHFEFRERPVEEEATSPV*
Ga0073934_101071242	3300006865	Hot Spring Sediment	MSSQMQARLKPEHTLRYPRLSANMWYDVSPIFPGVTTRRVDIFGRRITRIRTARDYETVQAAHFEFRERPVEEEARQPAVAM*
Ga0075434_1000272274	3300006871	Populus Rhizosphere	MNNMHASLKPEFALRYPRLSTGVWYEVAPIFPGVTIRRVDMFGRRVARIKTARDFETVQAAHFEFRKPTVDELAPAQS*
Ga0075434_1002908592	3300006871	Populus Rhizosphere	MAMQACLKPEFAARYPRLNSSVWYEVAPIFPGVTIRRVDMFGRRVARLKTARDFETVQAAHFEFRPDESTATA*
Ga0079217_100214392	3300006876	Agricultural Soil	MPDMQARLKPEYSLRYPRLSAGVWYDVSPIFPGVTVRRVDIFGRRITRLKTARDFETVQATHFEFRVDAVQQQDGQLATA*
Ga0075429_1001968832	3300006880	Populus Rhizosphere	MPDMQARLKPEYSLRYPRLSAGVWYDVSPIFPGVTVRRVDIFGRRITRLKTARDYETVQATHFEFRMDASQEQTEDGRMATA*
Ga0075429_1002234802	3300006880	Populus Rhizosphere	MAQMQAALKPEFSLRYPRLNSGVWYEVAPIFPGVTIRRVDMFGRRVARLKTARDFETVQAAHFEFRQRPAEELASA*
Ga0079215_102770552	3300006894	Agricultural Soil	MPDMQARLKPEYSLRYPRLSAGVWYDVSPIFPGVTVRRVDIFGRRITRLKTARDFKTVQATHFEFRIDAVQQPQDGQLATA*
Ga0075436_1008903071	3300006914	Populus Rhizosphere	VSFQYYAGARLPGENMNNMHASLKPEFALRYPRLSTGVWYEVAPIFPGVTIRRVDMFGRRVARIKTARDFETVQAAHFEFRKPTVEELATATA*
Ga0079216_101654131	3300006918	Agricultural Soil	MPDMQARLKPEYSLRYPRLSAGVWYDVSPIFPGVTVRRVDIFGRRITRLKTARDYETVQATHFEFRMDATQEQPEDGRMATA*
Ga0079218_101849882	3300007004	Agricultural Soil	MPDMQARLKPEYSLRYPRLSAGVWYDVSPIFPGVTVRRVDIFGRRITRLKTARDFETVQATHFEFRIDAVQQPQDGQLATA*
Ga0102952_11525031	3300007769	Soil	MSAMQARLKPEHTLRYPRLSPHMWYEVSPIFPGVTTRRVDIFGRRITRIRTTRDYETVQAAHFEFRAKPVAEEQAALA*
Ga0066710_1000322596	3300009012	Grasslands Soil	MSEMQARLKPEFSLRYPRLSAGVWYDVSPIFPGVTVRRVDIFGRRITRLKTTRDFETVQASHFEFRPRAAEVEAEKVMA
Ga0066710_1005958223	3300009012	Grasslands Soil	MTEMQARLKPEHALRYPRLSPNVWYDVAPIFPGVTTRRVDIFGRRITRIRTPRDYETVQAAHFEFRYRPEHEEEPATV
Ga0066709_1008364952	3300009137	Grasslands Soil	MSEMQARLKPEFSLRYPRLSAGVWYDVSPIFPGVTVRRVDILGRRITRLKTTRDFETVQASHFEFRPRAAEVEAEKVMA*
Ga0114129_101861373	3300009147	Populus Rhizosphere	MPDMQARLKPEYSLRYPRLSAGVWYDVSPIFPGVTVRRVDIFGRRITRLKTARDFETVQATHFEFRLET
Ga0114129_129328041	3300009147	Populus Rhizosphere	DANYISRDLTLPRDPMPDMQARLKPEYSLRYPRLSAGVWYDVSPIFPGVTVRRVDIFGRRITRLKTARDYETVQATHFEFRMDASQEQTEDGRMATA*
Ga0075423_107080312	3300009162	Populus Rhizosphere	MNPMQARLKPEFTLRYPRLSAGTWYDVAPIFPGVTVRRVDMFGRRVARIKTQRDYETVQAAHFEFRPLAETAENLQTA*
Ga0075423_108966393	3300009162	Populus Rhizosphere	MQACLKPEFAARYPRLNSSVWYEVAPIFPGVTIRRVDMFGRRVARLKTARDFETVQAAHFEFRPVESTATA*
Ga0131077_101559502	3300009873	Wastewater	MLQMQARLKSEHTLRYPRLSPQVWYEVSPIFPGVTTRRVDIFGRRITRIKTARDYETVQAAHFEFRPRPVEEPQMAMA*
Ga0131077_108391462	3300009873	Wastewater	MSEMQARLKPEFSLRYPRLSAGVWYDVAPIFPGVTVRRVDIFGRRIARLRTSKDFETVQALHFDFRTRVEEAEPMAAAIA*
Ga0134080_105602481	3300010333	Grasslands Soil	RLKPEFSLRYPRLSAGVWYDVSPIFPGVTVRRVDIFGRRITRLKTTRDFETVQASHFEFRPRAAEVEAEKVMA*
Ga0116237_101454432	3300010356	Anaerobic Digestor Sludge	MAIHMQARLKSEHTLRYPRLSANMWYEVSPIFPGVTTRRVDIFGRRITRIRTARDYETVQAAHFEFRERPVEEEQVVMA*
Ga0136847_102919901	3300010391	Freshwater Sediment	MADMQARLKPEFSLRYPRLSAGVWYEVSPIFPGVTVRRVDIFGRRISRLKTARDFETVQAAHFEFRPFAAAATEGELATA*
Ga0136847_110554502	3300010391	Freshwater Sediment	MAIMQACLRPEFAPRYPRLNSSIWYEVAPIFPGVTIRRVDMFGRRVARLKTARDFETVQAAHFEFRLRSDTADELAPA*
Ga0136847_1155545910	3300010391	Freshwater Sediment	MPDMQGRLKPEYSLRYPRLSAGVWYDVSPIFPGVTVRRVDIFGRRITRLKTARDFETVQATHFEFRVEAVQPQDGKLATA*
Ga0136847_117709672	3300010391	Freshwater Sediment	MPDMQARLKPEYSLRYPRLSAGLWYDVSPIFPGVTVRRVDIFGRRITRLKTARDFETVQAAHFEFRAEAVQQQEGQLATA*
Ga0134122_113018082	3300010400	Terrestrial Soil	MQARLKPEHTLRYPRLSPHVWYEVSPIFPGVTTRRVDIFGRRITRIKTARDYETVQSAHFEFRERPVEEEATAPA*
Ga0134122_124527751	3300010400	Terrestrial Soil	MPDMQARLKPEFSLRYPRLSAGVWYDVSPIFPGVTVRRVDIFGRRIARLKTQRDFETVQAAHFEFGAPRGQDAERATA
Ga0134121_102534092	3300010401	Terrestrial Soil	MMSEMQARLKPEFTLRYPRLSPQLWYEVIPIFPGVTTRRVDIFGRRITRIKTARDYETVQAAHFEFRKRTAEAELPAMA*
Ga0134123_115094402	3300010403	Terrestrial Soil	MPDMQARLKPEFSLRYPRLSAGVWYEVAPIFPGVTVRRVDIFGRRITRLKTARDFETVQALHFDFRQQVLAEQGVHA*
Ga0137446_10012213	3300011419	Soil	MPDMQARLKPEYGLRYPRLSAGVWYDVSPIFPGVTVRRVDIFGRRITRLKTARDFETVQASHFEFRMEAAQQHDGQLATA*
Ga0137375_100948033	3300012360	Vadose Zone Soil	MSEMQARLKPEFSLRYPRLSAGVWYDVSPIFPGVTVRRVDIFGRRITRLKTSRDFETVQASHFEFRARPAEVEAEKVMA*
Ga0137375_102523232	3300012360	Vadose Zone Soil	MSEMQARLKPEFSLRYPRLSAGVWYDVSPIFPGVTVRRVDIFGRRITRLKTNRDFETVQSSHFDFRPRPAEVEAERSMA*
Ga0075301_10743541	3300014262	Natural And Restored Wetlands	MTRMEARLKPEFALRYPRLQHGVWYEVAPIFPGVTVRRIDMFGRRITRLKTNRDYETVQAGHFEFRTIAAEAHSPA*
Ga0180074_10194662	3300014877	Soil	MPDMQARLKPEYGLRYPRLSAGVWYDVSPIFPGVTVRRVDIFGRRITRLKTARDFETVQASHFEFRLEAC*
Ga0180086_11044502	3300014883	Soil	MPDMQARLKPEFSLRYPRLSAGVWYDVSPIFPGVTVRRVDIFGRRIARLKTSRDFETVQAAHFEFGAPRALQAERATA*
Ga0184626_103728271	3300018053	Groundwater Sediment	MISDMQARLKPEFSLRYPRLSAGVWYDVSPIFPGVTVSRVDIFGRRIARLKTSRDFETVQAAHFEFIPRKAEQGELASA
Ga0184615_100638972	3300018059	Groundwater Sediment	MPDMQARLKPEYGLRYPRLSAGVWYDVSPIFPGVTVRRVDIFGRRITRLKTARDFETVQASHFEFRLEACQQQEDQLATA
Ga0184637_104201281	3300018063	Groundwater Sediment	MTCDMQARLKPEFSLRYPRLSAGVWYDVSPIFPGVTVRRVDIFGRRIARLKTSRDFETVQAAHFEFIPRKVEQGELASA
Ga0184636_11488871	3300018068	Groundwater Sediment	MPDMQARLKPEFSLRYRRLSAGVWYYVSPVFPGVNVRRVDVFGRRITRLKTSRDFETVQAAHFEFRSGIVHQQEGLLETA
Ga0184636_11696862	3300018068	Groundwater Sediment	MSCDMQARLKPEFSLRYPRLSAGVWYDVSPIFPGVTVRRVDIFGRRIARLKTSRDFETVQAAHFEFTPRKVEQGELASA
Ga0184627_100295043	3300018079	Groundwater Sediment	MTCDMQARLKPEFSLRYPRLSAGVWYDVSPIFPGVTVRRVDIFGRRIARLKTSRDFETVQAAHFEFIARKAE
Ga0184625_106112741	3300018081	Groundwater Sediment	MTSDMQARLKPEFSLRYPRLSAGVWYDVSPIFPGATVRRVDIFGRRVARLKTSRDFETVQAAHFEFIPRKVEQGELASA
Ga0184629_100652562	3300018084	Groundwater Sediment	MSCDMQARLKPEFSLRYPRLSAGVWYDVSPIFPGVTVRRVDIFGRRIARLKTSRDFETVQAAHFEFIPRKV
Ga0190265_103330661	3300018422	Soil	MSDMQARLKPEFSLRYPRLSSGVWYDVSPIFPGVTVRRVDIFGRRIARLKTMKDFETVQAAHFEFIPRRVEHGELASA
Ga0187894_100438512	3300019360	Microbial Mat On Rocks	MNVMQARLKPEHTLRYPRLSPQMWYDVAPIFPGVSTRRVDIFGRRITRIRTARDYETVQAAHFEFRPRPVEEEQVATV
Ga0187892_1000014584	3300019458	Bio-Ooze	MMSQQMMQARLKPEHTLRYPRLSPQVWYDVSPIFPGVTTRRVDIFGRRITRIKTARDYETVQAMHFEFRGRPVEEGQVVMA
Ga0187892_100559792	3300019458	Bio-Ooze	MPKMEARLKPEFTLRYPRLEHGVWYEVAPIFPGVTVRRIDMFGRRITRLKTARDFETVQASHFEFRMRPETAGINAEAPEQAHASAG
Ga0187892_100975512	3300019458	Bio-Ooze	MNVMQARLKPEHTLRYPRLSPQMWYEVAPIFPGVSTRRVDIFGRRITRIKTTRDYETVQAAHFEFRTRPVEEEQVATV
Ga0187892_103262661	3300019458	Bio-Ooze	MNVMQARLKPEHTLRYPRLSPQMWYDVAPIFPGVSTRRVDIFGRRITRIKTARDYETVQAAHFEFRNRPVEEEQVATV
Ga0187892_103588681	3300019458	Bio-Ooze	WAGLLTFTSGTSMNMMHARLRPEFSVKYPRLSSETWYEVAPIFPGVTVRRVDMFGRRVTRIRTAADYETVQSAHFEFRGESDAPRELATA
Ga0187893_101885031	3300019487	Microbial Mat On Rocks	MMSQQMMQARLKPEHTLRYPRLSPQVWYDVSPIFPGVTTRRVDIFGRRITRIKTARDYETVQAMHFEFRERPVEEGQVALA
Ga0194131_101247311	3300020193	Freshwater Lake	LMPQQMQARLKPEHTLRYPRLSPQLWYEVSLIFPGVTTRRADIFGRRITRIRTARDYETVQAMHFEFRERPVEEEVVATA
Ga0194132_100011802	3300020214	Freshwater Lake	MPQQMQARLKPEHTLRYPRLSPQLWYEVSLIFPGVTTRRADIFGRRITRIRTARDYETVQAMHFEFRERPVEEEVVATA
Ga0193719_102522282	3300021344	Soil	MSDMQARLKPEFSLRYPRLSAGVWYDVSPIFPGVTVRRVDIFGRRISRLKTARDFETVQAAHFEFRARAVAATEGELVPA
Ga0209619_103438401	3300025159	Soil	MPNMEARLKPEFTLRYPRLEHGVWYEVAPIFPGVTVRRIDMFGRRITRLKTVRDYETVQAAHFEFRTHDEPARVAA
Ga0209109_100401104	3300025160	Soil	MPKMEARLKAEFTLRYPRLEHGVWYEVAPIFPGVTVRRIDMFGRRITRLKTSRDYETVQASHFDFRARPEPAEVVATIP
Ga0209324_100571782	3300025174	Soil	MPNMEARLKPEFTLRYPRLEHGVWYEVAPIFPGVTVRRIDMFGRRITRLKTVRDYETVQAAHFEFRTHDEPARVAAAVS
Ga0209640_100051484	3300025324	Soil	MPKMEARLKAEFTLRYPRLEHGVWYEVAPIFPGVTVRRIDMFGRRITRLKTSRDYETVQASHFEFRARPEPAEVVATIP
Ga0209640_109541882	3300025324	Soil	MPDMQARLKPEYSLRYPRLSAGVWYDVSPIFPGVTVRRVDIFGRRITRLKTARDYETVQATHFEFRGGEGAPSRSNSAR
Ga0209751_103831471	3300025327	Soil	MPNMEARLKPEFTLRYPRLEHGVWYEVAPIFPGVTVRRIDMFGRRITRLKTVRDYETVQAAHFEFRTHDELARVAAAVS
Ga0209751_113274801	3300025327	Soil	MTTMQARLRSEFAARYPRLTHGVWYEVAPIFPGVTIRRVDMFGRRVARLKTPRDFETVQAAHFEFRNSPELAEHAVEA
Ga0207684_103391292	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MSDMQARLKPEFSLRYPRLSAGVWYDVSPIFPGVTVRRVDIFGRRISRLKTARDFETVQAAHFEFRPRTAAASEAELVSA
Ga0207646_106117182	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MANMHACLKPEFALRYPRLTSGVWYEVAPIFPGVTIRRVDMFGRRVARLKTARDFETVQAAHFEFRKDMANELTTA
Ga0207646_116637302	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MAMQACLKPEFAPRYPRLNSSVWYEVAPIFPGVTIRRVDMFGRRVARLKTARDFETVQAAHFEFRPRSETADEIAMA
Ga0207658_104602262	3300025986	Switchgrass Rhizosphere	MPDMQARLKPEFSLRYPRLSAGVWYDVSPIFPGVTVRRVDIFGRRIARLKTARDFETVQAAHFEFGSARGQEAERATA
Ga0207674_104052944	3300026116	Corn Rhizosphere	LKPEFAPRYPRLNSSIWYEVAPIFPGVTIRRVDMFGRRVARLKTARDFETVQAAHFEFRPRPDTADELATA
Ga0209818_100020311	3300027637	Agricultural Soil	MPDMQARLKPEYSLRYPRLSAGVWYDVSPIFPGVTVRRVDIFGRRITRLKTARDFETVQATHFEFRVDAVQQQDGQLATA
Ga0209814_100842142	3300027873	Populus Rhizosphere	MPEMQARLKPEYSLRYPRLKAGVWYYVAPVFPGVKERRVDVFGRRITRLKTARDFETVQAAHFEFRMESAHQQEDQLTA
Ga0209481_100068472	3300027880	Populus Rhizosphere	MPDMQARLKPEYSLRYPRLSAGVWYDVSPIFPGVTVRRVDIFGRRITRLKTARDFETVQATHFEFRLETAQQHEDQLASA
Ga0209481_100533174	3300027880	Populus Rhizosphere	MPDMQARLKPEYSLRYPRLSAGVWYDVSPIFPGVTVRRVDIFGRRITRLKTARDYETVQATHFEFRMDASQEQTEDGRMATA
Ga0209486_1000021225	3300027886	Agricultural Soil	MPDMQARLKPEYSLRYPRLSAGVWYDVSPIFPGVTVRRVDIFGRRITRLKTARDFETVQATHFEFRIDAVQQPQDGQLATA
Ga0209382_116689542	3300027909	Populus Rhizosphere	MISDMQARLKPEFSLRYPRLSAGVWYDVSPIFPGVTVRRVDIFGRRIARLKTSRDFETVQAAHFEFIPRKVEQGELASA
Ga0268265_102132281	3300028380	Switchgrass Rhizosphere	MREMQARLKPEYSLRYPRLSAGVWYGVSPIFPGVTVRRVDIFGRRITRLKTARDFETVQSSHFEFRVEAAQEQEDQMATA
Ga0268265_120947511	3300028380	Switchgrass Rhizosphere	MPDMQARLKPEYSLRYPRLSAGVWYYVSPVFPGVKERRVDVFGRRITRLKTARDFETVQVAHFEFRQESVHQQEAVHQQEGHRSRT
(restricted) Ga0255311_10051712	3300031150	Sandy Soil	MAMQACLKPEFAPRYPRLNSSMWYEVAPIFPGVTIRRVDMFGRRVARLKTARDFETVQAAHFEFRPRPETADEVAMA
(restricted) Ga0255311_10185842	3300031150	Sandy Soil	MPDMQARLKPEYSLRYPRLSAGVWYDVSPIFPGVTVRRVDIFGRRITRLKTARDYETVQATHFEFRVEATQQQDGQLATA
(restricted) Ga0255310_101389071	3300031197	Sandy Soil	MPDMQARLKPEYSLRYPRLSAGVWYDVSPIFPGVTVRRVDIFGRRITRLKTARDFETVQATHFEFRMDAVQQQ
Ga0170824_1281143541	3300031231	Forest Soil	MNEMQARLKPEFSLRYPRLSAGVWYDVSPIFPGVTVRRVDIFGRRIARLKTARDFETVQAAHFEFGAPRGQEAERATA
(restricted) Ga0255312_10202323	3300031248	Sandy Soil	MPDMQARLKPEYSLRYPRLSAGVWYDVSPIFPGVTVRRVDIFGRRITRLKTARDFETVQATHFEFRVDAVQQQEGQLATA
(restricted) Ga0255312_11258662	3300031248	Sandy Soil	MPDMQARLKPEYSLRYPRLSAGVWYDVSPIFPGVTVRRVDIFGRRITRLKTSRDFETVQAAHFEFRVEVPQEQTA
Ga0307408_1000170433	3300031548	Rhizosphere	MPDMQARLKPEYSLRYPRLSAGVWYDVSPIFPGVTVRRVDIFGRRITRLKTARDFETVQAIHFEFRVDAVQQQDGELATA
Ga0310813_100345741	3300031716	Soil	MLVQLAQVRDMNNMHASLKPEFALRYPRLSTGVWYEVAPIFPGVTIRRVDMFGRRVARIKTARDFETVQAAHFEFRKPTVDELAPAQS
Ga0326597_110663142	3300031965	Soil	MTMMQARLRSEFAARYPRLAHDVWYEVAPIFPGVTIRRVDMFGRRVARLRTPRDFETVQAVHFEFRPRPEAAEHQPAEHQLV
Ga0307416_1029786121	3300032002	Rhizosphere	MLTMQARLKPEHTLRYPRLSPHVWYEVSPIFPGVTTRRVDIFGRRITRIRTARDYETVQSAHFDFRERPVEEEVATA
Ga0335070_117829101	3300032829	Soil	VIALMQARLKPEHTLRYPRLSPHVWYEVSPIFPGVTTRRVDIFGRRITRIKTARDYETVQSAHFEFRERPVEEEVAAPA
Ga0214472_106572522	3300033407	Soil	MPNMEARLKPEFTLRYPRLEHGVWYEVAPIFPGVTVRRIDMFGRRITRLKTARDYETVQAVHFEFRLRPEPAGVAATIP
Ga0310810_101158162	3300033412	Soil	MAMQACLKPEFAARYPRLNSSVWYEVAPIFPGVTIRRVDMFGRRVARLKTARDFETVQAAHFEFRPVESTATA
Ga0326726_104619021	3300033433	Peat Soil	ARLKPEFSLRYPRLSAGVWYDVSPIFPGVTVRRVDIFGRRIARLKTQRDFETVQAAHFEFTAPRVQEAERATA
Ga0316628_1011019302	3300033513	Soil	MASQMQARLKSEHTLRYPRLSPNMWYDVSPIFPGVTTRRVDIFGRRITRIRTTRDYETVQAAHFEFRERPVEEEQAVTA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters