3300003848: Agave microbial communities from Guanajuato, Mexico - Or.Sf.rz

Overview

Basic Information

• IMG/M Taxon OID: 3300003848
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053055 | Gp0104146 | Ga0058694
• Sample Name: Agave microbial communities from Guanajuato, Mexico - Or.Sf.rz
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 155119242
• Sequencing Scaffolds: 22
• Novel Protein Genes: 23
• Associated Families: 20

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	4
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Rhizophoraceae → Rhizophora → Rhizophora mucronata	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
Not Available	7
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → Caryophyllales → Cactineae → Cactaceae → Opuntioideae → Opuntia → Opuntia streptacantha	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → Rickettsiaceae → Rickettsieae → Rickettsia → spotted fever group → Rickettsia rickettsii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Agave Microbial Communities From California, Usa, And Mexico
• Type: Host-Associated
• Taxonomy: Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant surface

Location Information

• Location: Guanajuato, Mexico
• Coordinates
  • Lat. (^o): 21.7658
  • Long. (^o): -100.163
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001800	Metagenome / Metatranscriptome	632	Y
F002654	Metagenome / Metatranscriptome	539	Y
F002847	Metagenome / Metatranscriptome	526	Y
F004350	Metagenome / Metatranscriptome	442	Y
F004795	Metagenome / Metatranscriptome	423	Y
F011556	Metagenome	289	Y
F024814	Metagenome / Metatranscriptome	204	Y
F040187	Metagenome / Metatranscriptome	162	Y
F047457	Metagenome / Metatranscriptome	149	Y
F052858	Metagenome / Metatranscriptome	142	Y
F054073	Metagenome / Metatranscriptome	140	Y
F054632	Metagenome	139	Y
F057856	Metagenome	135	Y
F059667	Metagenome / Metatranscriptome	133	Y
F067705	Metagenome / Metatranscriptome	125	Y
F074316	Metagenome	119	Y
F075603	Metagenome	118	Y
F078908	Metagenome / Metatranscriptome	116	Y
F079525	Metagenome	115	Y
F091226	Metagenome	107	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0058694_1000811	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	14085
Ga0058694_1003276	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5125
Ga0058694_1007137	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Rhizophoraceae → Rhizophora → Rhizophora mucronata	2818
Ga0058694_1007508	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2715
Ga0058694_1008542	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2442
Ga0058694_1009602	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2218
Ga0058694_1012589	Not Available	1744
Ga0058694_1013589	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1626
Ga0058694_1013681	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1617
Ga0058694_1019434	All Organisms → cellular organisms → Bacteria → Proteobacteria	1167
Ga0058694_1020190	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1128
Ga0058694_1020483	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1113
Ga0058694_1023564	Not Available	979
Ga0058694_1023931	Not Available	966
Ga0058694_1028590	Not Available	829
Ga0058694_1031595	Not Available	762
Ga0058694_1031757	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → Caryophyllales → Cactineae → Cactaceae → Opuntioideae → Opuntia → Opuntia streptacantha	759
Ga0058694_1035563	Not Available	695
Ga0058694_1040158	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → Caryophyllales → Cactineae → Cactaceae → Opuntioideae → Opuntia → Opuntia streptacantha	635
Ga0058694_1046671	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → Rickettsiaceae → Rickettsieae → Rickettsia → spotted fever group → Rickettsia rickettsii	570
Ga0058694_1047508	Not Available	564
Ga0058694_1049836	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → Caryophyllales → Cactineae → Cactaceae → Opuntioideae → Opuntia → Opuntia streptacantha	546

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0058694_1000811	Ga0058694_10008115	F004795	MAKRDETNALSWPWWAPWALLAVAATSLLTVWVTLNDIL*
Ga0058694_1003276	Ga0058694_10032767	F047457	LGGTFGGYMLFPSGGPVNIGADARLLVANSANSTAYGNKLLGGFVGLRIDGEGARLPVVPYFQFEVGGAGTNNGTSRTRTGAFAYQAQFGADIPFASDQIAARVEYGTGQLLGISHTNHTLQTFSIGLVVHIR*
Ga0058694_1007137	Ga0058694_10071376	F002654	LSYQTFNDKVVCPKGNSPEQVFKVPKFLLSESKEVFKLYNQEIGLEAAIF*
Ga0058694_1007508	Ga0058694_10075082	F001800	MKSTFKKMTAVLSLLVAXALVTASAVAQPGANHADNWRDQDDVLAQMTELEQLHATFHAAISVQNPAGDSAEVITQRIREILGIFTQDARLTVIGTSTTSGNYVGNGDPDDLATCPLPSYDTSPNGLQGTLCTFFKYVAGGLKQSNQWVSLSPAYKTKYVPVKKDGQWTSSVYFECHYFDVSTIATGQPSWTAKSHVNLQGEAKKIDGKWFLTSITSSAVGIPLPPPVVVPAP*
Ga0058694_1008542	Ga0058694_10085423	F054632	MAPLNNNHRAAHRLPFNVDLLAVGIALALAALIRFNVIHQISF*
Ga0058694_1009602	Ga0058694_10096022	F024814	MKYFGTVQSFDTIKGHGEIKQETGGNHLRFETSAILWDKNVAPVVGQRLSYDVGQAPDRTPCALNLQTI*
Ga0058694_1012589	Ga0058694_10125891	F054073	VESYSGRILVEDADGSRFYVHEYSGRRTFIRVRRYMLETGEDVRRVNSVTFEIVRTGEQLTRVGDG*
Ga0058694_1013589	Ga0058694_10135892	F052858	MQRIGDIMHLRRRDDFGEGDHQEYVEPGFRDALLIGGLGIILVGGFIASLFG*
Ga0058694_1013681	Ga0058694_10136813	F078908	MTYGHSSRAPAPSILVQKALARASGTWGGYQAWRQLDPEERLQLVEKALGCAANDCIDGFPIAL*
Ga0058694_1019434	Ga0058694_10194342	F002847	VITALQLVSAILLFGGVVWVGDVLAREMDSALGDKPLRDRDG*
Ga0058694_1020190	Ga0058694_10201903	F004350	MKPYILGAICVWFLCGFAGAYLLGQQRVDIPTISGGPIALWNGLNAPPNN*
Ga0058694_1020483	Ga0058694_10204832	F040187	MRQHYIIDSAATLLGVALVIVTAVHVTGKAETTFSDELAFGAALLFLGSCGASHLSITRGEDRLETIADRIFAAGLLLLLASVLGFWF*
Ga0058694_1023564	Ga0058694_10235641	F057856	MGLAQLNYKISNLRPNKYSDYFHVQILAILPTHTRQLTYPLSISQLPIKTDESSFEHFIEHLAGVKENSKF*
Ga0058694_1023931	Ga0058694_10239312	F074316	MLQSSSSCPNPGYSHIVHSPEGFTNLAPQLNYITDIILELKEELANIRAEVKEIKKQLAVTHLSLVNEIRHSGKSDLSISSPFQHKYPFQNSKTKNPFPVQELIIHKEEEKTPEKEIEKNGL*
Ga0058694_1028590	Ga0058694_10285903	F075603	MMIKKLFKKIRAKIGTPKWYQSHTSCLFHRQKPTKIIPEDEELTNEEWYVETQLVSPARDSLSGLSNE*
Ga0058694_1031595	Ga0058694_10315951	F057856	MGLVQLNYKISNLRPNKYLDYFHVQMLVILPTHTRQLTSPLSISQLPIKTDESSFEHFIEHLVGVGENSKF*
Ga0058694_1031757	Ga0058694_10317571	F079525	YMKDVQFFKHFNVAWIFSWEYRLQHFLPNPYPLSFVRIYKVKWWSEFKTRLCGKENVEYFCQTNKKKFTLHNLHLFETKAIAPATPVKREKREPSSSSSTKFRAKGLSQKERDLLEYLKDDPNMKQIVLQKILDKQGNSDDETVSSAASSSPPKPEDFQDSQDPYEL*
Ga0058694_1035563	Ga0058694_10355631	F074316	MLQSSSSCPNPGYSHIVHSPEGFTNLAPQLNYITDIILELKEELANIRAEVKEIKKQLAVTHLSLVNEIRHSGKSDLSISSPFQHKYPFQNPKTKNPFPVQELIIHKEEEKTPE
Ga0058694_1040158	Ga0058694_10401581	F091226	LSKKERDLLEYLKDDPSMKQIVLQKILDKQGNSEDETASSASSSSPPKPEDFQDSQDPYEF*
Ga0058694_1046671	Ga0058694_10466711	F059667	ANIKGNTKCKAKNLFKVALFTLKPPQMNSTMSCPIQGTALIKLVITVAPHNDICP*
Ga0058694_1047508	Ga0058694_10475081	F054073	VESYSGRILVEDPSGARCYVYEYRGRRTFFRVNRYMLDTGETVRRVDGDTFEIATTGEKLTRVDD*
Ga0058694_1049836	Ga0058694_10498361	F011556	ELTPSDKLDKFQRRGIVRGKIIRASYFHDQGLEVFLAKVQTQGWFELFANTELGCSPADVVEFYANVALHGDVLSSTVNGVLIEVDAQALGVILGVPATGFDLYVREDKSLLGRDRLLELSRSLSQQPGLRSPISVKKSDMQPIHQLLFWFIIKNVTPRAQGRNQADAMDQALIDLMDRG
Ga0058694_1050519	Ga0058694_10505192	F067705	VRVKAIAFLVIVAASGAAFYVMHADNRADAAKGDCYAADSGPSTPTICG*