3300003677: Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - Metatranscriptome CAN11_66_BLW_10 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300003677
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0099541 | Gp0089015 | Ga0008458
• Sample Name: Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - Metatranscriptome CAN11_66_BLW_10 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 16057799
• Sequencing Scaffolds: 34
• Novel Protein Genes: 45
• Associated Families: 39

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	9
All Organisms → cellular organisms → Eukaryota	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium rassoulzadegani	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	3
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	5
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	2
All Organisms → cellular organisms → Eukaryota → Cryptophyceae	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	2
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Choreotrichia	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales	1
All Organisms → cellular organisms → Eukaryota → Haptista	1
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → intertidal zone → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Monterey Bay, California, USA
• Coordinates
  • Lat. (^o): 36.25
  • Long. (^o): -122.2099
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000055	Metagenome / Metatranscriptome	3096	Y
F000075	Metagenome / Metatranscriptome	2622	Y
F000212	Metagenome / Metatranscriptome	1580	Y
F000237	Metagenome / Metatranscriptome	1498	Y
F000787	Metagenome / Metatranscriptome	891	Y
F000953	Metagenome / Metatranscriptome	822	Y
F001099	Metagenome / Metatranscriptome	778	Y
F001240	Metagenome / Metatranscriptome	739	Y
F001461	Metagenome / Metatranscriptome	690	Y
F001488	Metagenome / Metatranscriptome	686	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0008458J53046_100034	Not Available	546
Ga0008458J53046_100129	All Organisms → cellular organisms → Eukaryota	781
Ga0008458J53046_101047	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium rassoulzadegani	516
Ga0008458J53046_101382	Not Available	749
Ga0008458J53046_101559	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	662
Ga0008458J53046_101591	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	555
Ga0008458J53046_102204	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	764
Ga0008458J53046_102310	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	526
Ga0008458J53046_102431	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	821
Ga0008458J53046_102530	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	526

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0008458J53046_100034	Ga0008458J53046_1000341	F090440	GNEIVSGLKLATDLRLKRVYHCRITDVGEDDDLRIIIRKSIGG*
Ga0008458J53046_100129	Ga0008458J53046_1001291	F006424	LEIGITALGSGWVNTVFVRYDFPEFGTDLVSALSSLNMYDFS
Ga0008458J53046_100323	Ga0008458J53046_1003231	F000075	LLKMKFAAAALVATVSANTYDFMGEDDLLAQLETTLNSAQRSEARGDADAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK*
Ga0008458J53046_100883	Ga0008458J53046_1008831	F000075	GINKQTNKKKQMKFAAALIATVAAVDFEYMNEDELLAQLSSNLSSAQRSEARGDADAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK*
Ga0008458J53046_101047	Ga0008458J53046_1010471	F000787	LLFPTIIMKFFAIAALFAAVEASAGTPPAVGLGHAYIPATREDYDNAKELWGGDWAKYRAAHPNDQDCGISESDAWKGAQQCSQSWECRGARLCERGGWCSGYDGCEGTPLPDQAPGLAPDH*
Ga0008458J53046_101382	Ga0008458J53046_1013822	F074943	MNMAEETVNMMNDAIASQGSDIDESQRQIKRLLEENLEIWKANLKE*LFVN*
Ga0008458J53046_101559	Ga0008458J53046_1015591	F000953	RTNMKFAVAAFIGLVAGAKLDKESDPSPKYYTPFDHEATYYERTTPARFSADTDDIFMRSMIEQYALEERTKVIEHDDGLKTGGEPSGKFWMNQASAMSAAKEVLTTHKGLTGKQLEDYVATYFAKSWGHFDVNQTGFIEVIKMPQFMRFLCSDQYMSLGESG*
Ga0008458J53046_101591	Ga0008458J53046_1015911	F002278	KMKTAFAVIAALVAIVPNVEAQTDKLHFFDFDNAKMLYKGDWAAYKKSRPHDNDCSIAESDNWKGAQQCVESWECRGARMCERGGWCSGFDGCEGSPLPTQAPGVSYTH*
Ga0008458J53046_102204	Ga0008458J53046_1022041	F074910	GLGTMLRTTALLAALCGASAHQLTMDNFDELITKTGKASFIKFQAPW*
Ga0008458J53046_102205	Ga0008458J53046_1022051	F000075	CLAIAVAANRYENMNEDDLLVSLESTLSSAQASEARGDADAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK*
Ga0008458J53046_102310	Ga0008458J53046_1023101	F019482	LEGFDGVLKDWLDRLHDTESSLHIVNLWLHAFDGLHLSGDLNEWLSIIKSLEDSSGKGFLDVLDGSSLGNGGITISSGLGSLSGVEVGGELGQKIILVHVLEGDSLGDSDESAEFHFK
Ga0008458J53046_102313	Ga0008458J53046_1023131	F000055	MKFANILAIAALMSATNAVEVTATKEGDWFEDKTPPPTAQGTPSSGYFGADEDDVMNNIYNHYAVPITNAAGQPTGHKVLYKDGCQKACAEILLVTKQVSEAKMESYMGEFFPRTWAKFDLNNSGEIDITESHTFMRSLLGRLNQFVLAPGSLTDIKV*
Ga0008458J53046_102431	Ga0008458J53046_1024311	F011850	RLKSGAAVARRPAATAPKMSLDIVDGAVQLLATAQNVPFVDEVTGDPQGFTAPVNHFASVIGLWVAFALPVWSAAYKQAGCDTPDWFGISQVAEDAPGIGLIAKAAPVYDGPTFREGLEYVFSFVWKPPILIAWKPRADLDREAMDPARDTVVSSLYKSFGGALDKTAIYDEEDQLLIISEIEELAPTPLGLRREAIAEAAGWYSGNPSFGKSLLEYSEETRKGKRDTGTVAISVEELQQLRAEAARRG*
Ga0008458J53046_102530	Ga0008458J53046_1025301	F005505	AELDEIRFYGVAPH*YFRPLMGLLTIAPTHYEGLM*MGLFFGLLAFMPLIYNCFNTFHKYVATIPMQNSLLQTSAFIFFMMSLYCAASMLPCGRYYYDPEGGYVGNPWVKISYQFIYLYLG*IIHHLDLFDHYIFQFTQTLIRKCGAYNARTLTNTFSNSNNAKTSDAFEAN*
Ga0008458J53046_102758	Ga0008458J53046_1027581	F001461	MKLSIVLIALFATTQATEAEAYPDHLGELFTNKENLYGSNWEKYKKSRQLMVDCDIYESENWLGTGKCKYSWECRGARQCEGQGWCYGDDACEEVHE*
Ga0008458J53046_102935	Ga0008458J53046_1029351	F003081	MFNDTRFGAEVFWMHLRGVDSLMLLSYMHIMKKIYLKNYVTSESDG*
Ga0008458J53046_103172	Ga0008458J53046_1031721	F001240	MKYAVFLALVAVVAAKPEATAPYNAWESVKDGAEDGKYERVITNNFSTDGDDIFMRSMIKKYAVEERTDSETLDDGTKIGGEPTGKFMMTKSTTLAAAKEVLNTHKGLSGEALASYIDTYYDKAWAHFDVNKGGDVEVIKMPQFMRFICSDQYMSLGESG*
Ga0008458J53046_103204	Ga0008458J53046_1032041	F002832	TMKFTAAILALVAVASAGSIEQKSAMTYTYEDIREQELKCKADRNREWKYDAATNTWACPLQRYD*
Ga0008458J53046_103423	Ga0008458J53046_1034231	F002730	MNNYSLGWKRGRRSGCSFLAHSSDINDLLEGLDGVLENWLDGLHDTESSLHIVDLWLHALDGLHLSGDLDEWLSVIKSLEDSGGKGLLDVLDGSGLGNGGVTITS
Ga0008458J53046_103729	Ga0008458J53046_1037291	F001099	GTGPLDKKYERVPPEHFATGSDDLFMKSMIMNYAQEGKDKEGAPNGQFFMTEAQTKAAAAEVLGSHKALDGPAKAEYLKTYFPRTWAHFDVNKAGMIGVESMPQFMRFLSSDQTLNL*
Ga0008458J53046_103833	Ga0008458J53046_1038331	F080125	AMYSMDASGSLSRGSFNNLEVPAMGERKTVPTLEAFFPFQKNGFSASGTLFGPGSQITFTEPFSGPCGAMYASQCHTFLDEISDALKGSGQGEIPRAEPTPTKAFPWAYEKAAWKK*
Ga0008458J53046_104256	Ga0008458J53046_1042561	F043967	FTPAAVPTIRGNTAVCANKFGQSSPAGAPPADLFNIWRDDYMLTPAQAAAEEAERKANTFFDGVLPPFSNIGNTERGEILDAPTLRGVGLKADFSTANPTSAYDTANFGKVEIFNKDVLKNPITGEGPEIAGKKTIAAAEKRADTPSYASQSLANFARWRRGEKTDDTRRFDLQKGDY*
Ga0008458J53046_104457	Ga0008458J53046_1044571	F000237	TRLMILHYFVP*YYLYLVKLHILFCHESWDTDSGETTYEDKSGSYIS*FYDAFLKEIQDAFY*TLYVFVYFFLHHFNGATVNYFFFER*NISELDEVRFYGVAPHWYFRPLMGILILAPTHYEGLM*MGLFFGLLSFMPVIYNCYNVFHKYVATIPMQNSLLQTSTFIFFMMSLYCTASMLPCGRYYYDPEGGYVGNP*VKLSYQFVYLYLGWIIHHLDLFDHYIFQFTQTLIRKCSSYNARTLKFNKNNVSGSDAFEK*
Ga0008458J53046_104778	Ga0008458J53046_1047781	F002691	MHISGYNGADEDEIMDNVFSRYSREGLTPSGHKTGQKLLMKDDAKIAAGTILEAAHKLQPYQVPAYLDANFDSAWSHFDQNHEGWVRYEETHTFQRFLMGQLNKFAGAPGSITDLSSGGPKYPLAYPLGSDAVPVSHV*
Ga0008458J53046_105136	Ga0008458J53046_1051366	F001488	MARLELTLNFPKNFEIKTFNVKSEKKLSPLAKLILQSVRFKHFYYVRDDISYLLKSNPIERDFLLQALYSIVISLQNNLSINFFDMWIYEIYINKVSIHNKFMNQKFQNLEPSEYITIKLAYGNNISQEKK*
Ga0008458J53046_105794	Ga0008458J53046_1057941	F007863	GLTCIPDHQLFATGMNGDEDLGQDIIMKGKPFHYNQKSQALFATGMNGDEDLGQDIIMKGKPFHYNQAPANATLFATGMNGDEDLGQDIIMKGKPFHYNQAPANATLFATGMNGDEDLGQDIIMKGKPFHYNQQKSQALFATGMNGDEDLGQDIIMKGKPFHYNQQPQALFATGMNGDEDLGQDIIMKGKPFHYNQAPANSKLFATGMNGDEDLGQDIIMKGKPFHYNQN*
Ga0008458J53046_105861	Ga0008458J53046_1058611	F043967	VLPPFSNIGNTGRGDIVDAPTLRGIGLKADFSTANPTSAYDTQNFGKAEIFNKDVIANPITGEGPEVAAKKTLAAAAAGVEEGSYASRSLSNFARWRKGEQTNEVRRFDLQRPK*
Ga0008458J53046_106224	Ga0008458J53046_1062241	F074943	MNMADETVNMMNDAISSQGSDIDESQRQIKRLLEENLEIWKANLKE*
Ga0008458J53046_107007	Ga0008458J53046_1070071	F043741	AGENMACAMMLGAFGTMFSGPADASAAVANTAAAAPNDLARLQELIKELEPAASVAQPKLPDLGPMPVVEEPPRVLETKAAPVEGFPNAEAEGNVMVFDEAEASVERALRRLAPSPGPKPAMNVASKNSKGKWCTKCTGFYNGAADAPGASMCYKKSQGSKETACYANHAGCPGDMKSYTCDIRTAEEGAASGICPANVVNAYNELKTDVSTLMNKLIVLKQEEQDLTLQLIEKAEYNNPTCACGPFDQIKGFML*
Ga0008458J53046_107095	Ga0008458J53046_1070951	F027881	FTNIQWILHKFFIMSLTVARSERVRGVLTHASRTEINFNLSGARVSNTLRTFGRFM*
Ga0008458J53046_107487	Ga0008458J53046_1074871	F019552	NKMKYAAFALLAAMVSDVSAQSYVSPDKRYTTAGGLPECHGNNGPLGINCIAPPCSGTNGPKDGPTGTPCLQDEPADIPHYNTDPTAGRPYATTGDRTRTEAGLGHYPSPGNHADYNSDNTASPEPFTQGAFVPGSGKQPITTAYFPDDYPKMLVQTEAFEGEPIGTLMAQLSARGQY*
Ga0008458J53046_108493	Ga0008458J53046_1084931	F026012	LLKSNPIERDFLLQALYSIVISLQNNLSVNFFDMWVYEIYINKVSTHNKFMDRNSQDLEPGEYITIKLAYGSSVSQEKK*
Ga0008458J53046_108570	Ga0008458J53046_1085701	F060338	QIILLFSIKLFCFDFSITNLVLVNLLVLLFFGAIVTLFSSNVNYVKETSFCFIPTT*
Ga0008458J53046_108701	Ga0008458J53046_1087011	F080526	MPNPLLPVAGAVVGVGTGTMISESALMTPKAIGLFYVQIAKDCYVSTGSKRIACGVATLACGVALLPGPHQGPFIVACAAASRGANKL*
Ga0008458J53046_109239	Ga0008458J53046_1092391	F058174	EIFYQNTNSQQQSREADHMSCKGFKILMVKHKADGFSQCITVRITSTTHFFLTTPSVLPHLPVDFVLCPLTLVPQRCLRPL*FLAFLSLSKSSLIMVSS*LEMRWDHVPCLGSFCLLRNHFGTLYSDGLARMSLTELISFSVISPDLLLVST*AILRARKENLLPIPLICLRPNGAFCLPAMFVFYTLKI*VNSSGFVNTNEVMILYNSL
Ga0008458J53046_109253	Ga0008458J53046_1092531	F103312	VVLVLDLSISEKIEAGKGRSLDGYKCNRLHVNMRMGSEHVGFLGELDLSCFLSLGHHMLVLNSHNTTTPGSSEGDVLVEVGGEVALEVGEVGEVFLSDIGEGNAGSGLGVAELSESCFTSDEAEWDVVLSAESWQENHDLEWVNIVGHDDELGFAFLDESGDVVETEFEVEWLWSGVSGSGTLSGFSFSDESVLLLGSGLWGVLGEELEELGGLVLVDGLLELVEGWW*
Ga0008458J53046_109624	Ga0008458J53046_1096241	F019552	TAGGLPECHGNNGPLGINCVAPPCSGTNGPKDGPTGTPCLQDEPADIPHYNTDPVAGRPYATTGDRTRTEDGLGHYPSPPNHADYNNDKAASPAPYEGGNMAPGTGHQPITAAYFPDNYPSVLVQFPEPQPIGTLMAQLNLQY*
Ga0008458J53046_112586	Ga0008458J53046_1125861	F050085	SSKAIKMLAKNALALRRVTPVGQRCMSALAGNVDKMVGKAAQMEKALPEILKPLAADMPGFAADLKAKVAANPELYKTIESKIAEADKPGVRATVDAPKAPHSCQYTQEGSVAYYVVGHIARADRRMKMLADVDVTPTAAQKAEWEADAAEWSKDTLKAALTAQSVPADTQKQMLD*
Ga0008458J53046_113985	Ga0008458J53046_1139851	F074910	TRVWSSTMLRTTALLAALCGASAVELTSDNFDELVTKTGKASFIKFQAPW*
Ga0008458J53046_114030	Ga0008458J53046_1140301	F046638	MINTLKNSIFKNLVVLIHGPIILLSNPNTKLTFKESKSLNPLISLLSFRLNNKIYSKKQIKNLNRMSYLENISIFHNSMKTCIKLPYYKFKNKRTPVVSK*
Ga0008458J53046_114030	Ga0008458J53046_1140304	F020094	SCLMSYISFFNSQKLISYVININLSSTNTLINVNSIKGNPKFFYSAGMFSLQKNQKTRQPKAIITILRALLAKSKIFKVKPVAVHFNNVFFNHQSYIFKKLKQKIFMKLVTSYNFRSHNGCRLKKKKRIKIRTRTRKL*
Ga0008458J53046_114348	Ga0008458J53046_1143481	F010660	QLFALLSFLGGASALIASPMAAHATQQRVAASPMMACNGGKGGSGGEGPPLDKMRRGRVKALIQAADDADKVKAILLSQQTERLLLNTNWKVRSNLNHHLRKRASQFGVDVPPEFGAYNVRPRNTNKQLLKPSVLTDTPPHPDAVAALAKLRFA*
Ga0008458J53046_114637	Ga0008458J53046_1146371	F000212	AICEPVCEQPKCHTSCAEPRNAVCDVKCEQPKCTIKCPDKGCSALDCPKCVTVCSQPNCVTHCQAPKPECEAVCEEPRCDWKCHKPQCPVPKCELVCENPNCSPQVNCCSCNNASVGVFSGMMFKETERNPMCCSCKTGEAGAQSEAS*
Ga0008458J53046_117369	Ga0008458J53046_1173691	F092159	VWNVETGCDAPAAAAPQMTQLLQMGTGVPQQTTMLNWANLSERAQKIKGLNFCASQFVTEDEVKYCVAKLFSGDVKFATMADY*
Ga0008458J53046_120720	Ga0008458J53046_1207201	F015559	PKPPAMAAHKWGTSTKVGDAFPNKAVDIGFVGLDPANRKMSGDLNKGQKTLWVTLPGAFTPT*