Sample 3300003366

Overview

Basic Information
IMG/M Taxon OID	3300003366 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0103000 \| Gp0061308 \| Ga0059159
Sample Name	Deep subsurface microbial communities from Mt. Terri, Switzerland - Autotrophic microbial communities BRH/23
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	410552336
Sequencing Scaffolds	18
Novel Protein Genes	19
Associated Families	18

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Miltoncostaeales → Miltoncostaeaceae → Miltoncostaea → Miltoncostaea oceani	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfovibrionales → Desulfovibrionaceae → Desulfovibrio → Desulfovibrio oxyclinae	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Deep Subsurface Microbial Communities From Mt. Terri Underground Rock Laboratory, Switzerland, That Are Autotrophic
Type	Environmental
Taxonomy	Environmental → Terrestrial → Deep Subsurface → Clay → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Mt. Terri Underground Rock Laboratory, Switzerland, That Are Autotrophic

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → borehole → clay soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Subsurface (non-saline)

Location Information
Location	Mt. Terri, Switzerland
Coordinates	Lat. (^o)	47.379	Long. (^o)	7.1648	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F001750	Metagenome / Metatranscriptome	642	Y
F001931	Metagenome / Metatranscriptome	615	Y
F007509	Metagenome / Metatranscriptome	350	Y
F013826	Metagenome / Metatranscriptome	268	Y
F039059	Metagenome	164	Y
F041974	Metagenome / Metatranscriptome	159	Y
F043351	Metagenome / Metatranscriptome	156	Y
F048553	Metagenome	148	Y
F065095	Metagenome / Metatranscriptome	128	Y
F066113	Metagenome / Metatranscriptome	127	Y
F068101	Metagenome / Metatranscriptome	125	Y
F075470	Metagenome	119	Y
F087671	Metagenome	110	Y
F094330	Metagenome	106	Y
F096021	Metagenome	105	Y
F097442	Metagenome	104	N
F097999	Metagenome	104	Y
F103798	Metagenome	101	Y

Family

Category

Number of Sequences

3D Structure?

F001750

Metagenome / Metatranscriptome

642

F001931

Metagenome / Metatranscriptome

615

F007509

Metagenome / Metatranscriptome

350

F013826

Metagenome / Metatranscriptome

268

F039059

Metagenome

164

F041974

Metagenome / Metatranscriptome

159

F043351

Metagenome / Metatranscriptome

156

F048553

Metagenome

148

F065095

Metagenome / Metatranscriptome

128

F066113

Metagenome / Metatranscriptome

127

F068101

Metagenome / Metatranscriptome

125

F075470

Metagenome

119

F087671

Metagenome

110

F094330

Metagenome

106

F096021

Metagenome

105

F097442

Metagenome

104

F097999

Metagenome

104

F103798

Metagenome

101

Scaffold	Taxonomy	Length	IMG/M Link
JGI25321J50212_10009381	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	5291	Open in IMG/M
JGI25321J50212_10019815	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Miltoncostaeales → Miltoncostaeaceae → Miltoncostaea → Miltoncostaea oceani	2823	Open in IMG/M
JGI25321J50212_10042785	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1428	Open in IMG/M
JGI25321J50212_10062067	All Organisms → cellular organisms → Bacteria	1043	Open in IMG/M
JGI25321J50212_10070446	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	941	Open in IMG/M
JGI25321J50212_10080170	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	847	Open in IMG/M
JGI25321J50212_10087018	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	794	Open in IMG/M
JGI25321J50212_10092118	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	759	Open in IMG/M
JGI25321J50212_10093724	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	749	Open in IMG/M
JGI25321J50212_10096335	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	733	Open in IMG/M
JGI25321J50212_10117500	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	628	Open in IMG/M
JGI25321J50212_10127936	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfovibrionales → Desulfovibrionaceae → Desulfovibrio → Desulfovibrio oxyclinae	589	Open in IMG/M
JGI25321J50212_10128810	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
JGI25321J50212_10137126	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	559	Open in IMG/M
JGI25321J50212_10138418	Not Available	555	Open in IMG/M
JGI25321J50212_10151972	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	517	Open in IMG/M
JGI25321J50212_10154986	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	510	Open in IMG/M
JGI25321J50212_10157269	All Organisms → cellular organisms → Bacteria	504	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

JGI25321J50212_10009381

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria

5291

Open in IMG/M

JGI25321J50212_10019815

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Miltoncostaeales → Miltoncostaeaceae → Miltoncostaea → Miltoncostaea oceani

2823

Open in IMG/M

JGI25321J50212_10042785

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

1428

Open in IMG/M

JGI25321J50212_10062067

All Organisms → cellular organisms → Bacteria

1043

Open in IMG/M

JGI25321J50212_10070446

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

941

Open in IMG/M

JGI25321J50212_10080170

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

847

Open in IMG/M

JGI25321J50212_10087018

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

794

Open in IMG/M

JGI25321J50212_10092118

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

759

Open in IMG/M

JGI25321J50212_10093724

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

749

Open in IMG/M

JGI25321J50212_10096335

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

733

Open in IMG/M

JGI25321J50212_10117500

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

628

Open in IMG/M

JGI25321J50212_10127936

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfovibrionales → Desulfovibrionaceae → Desulfovibrio → Desulfovibrio oxyclinae

589

Open in IMG/M

JGI25321J50212_10128810

All Organisms → cellular organisms → Bacteria

586

Open in IMG/M

JGI25321J50212_10137126

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

559

Open in IMG/M

JGI25321J50212_10138418

Not Available

555

Open in IMG/M

JGI25321J50212_10151972

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

517

Open in IMG/M

JGI25321J50212_10154986

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

510

Open in IMG/M

JGI25321J50212_10157269

All Organisms → cellular organisms → Bacteria

504

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
JGI25321J50212_10009381	JGI25321J50212_100093816	F041974	MDSMFWGLFGLFAAFVVLLAVVAVLRRRVGGGFGPTERSDGSMTVSPTGYSEKHEGHGKTIGPTDNNAAKY*
JGI25321J50212_10019815	JGI25321J50212_100198152	F103798	MEPTSAPLPRPGVRPRSVRPEGNVDPHKAGDEQLALVSQDHLRSLHQPLKYGFADRSTARKGLEVAAGVAIADRLGSIRQTAGPPIGRHGYMAIVWLGSRWLQLEQPTATAIPFSQYRMLHDFGWHESGRNARQALKRTLLNLQEARWEGDVNDSVTGRKTHEDHFGIIDRVLWPVVNEGRTERAGYIFLGSWFLEQLRHEAGAYIDWDVLRDLPPIARKLYGLLENDRFDPSDHGEEWQTYWLGDPFFTSVGSTCARERDNVA
JGI25321J50212_10042785	JGI25321J50212_100427851	F087671	MMKSCDEHKHEHRDLPCPWPDCPNSEGADDAFEVSRHTGAGKMTRAEGHFVKAPPPRKFQRAKWECEKCGAIGWTWMEEGAERRMDRCPHRKPGTVVPRR*
JGI25321J50212_10062067	JGI25321J50212_100620672	F066113	VYQNMGPEFPLRIITDDGECQVVDTPEALLESLDSIDSTDPANRVWVRDVLDRTVRLRMVGGVVEVLELWR*
JGI25321J50212_10070446	JGI25321J50212_100704462	F097999	MENCSYCGTPFPRTRKTRKYCTNRCRTNACLDKKPRLKAADLEALHGVLHAEFASLEEMRERLRLILAPEMPPIPLVDGRAAIPRLD*
JGI25321J50212_10080170	JGI25321J50212_100801701	F065095	MAGTEQKEVIERSIVRARDGVGDRIDELDRHLRTNLDPKTIAKTYAPQMIAGGAVLGVIVGFGLPKVFRKLVTWGVPLAIVAMTIKNARERDELEGLS*
JGI25321J50212_10087018	JGI25321J50212_100870182	F001931	MTNEALQQQRLDILSGVVSTLLSELKGGSGDKDRRRQVEEWMRTLAEKYPEFEIEAGLRDYYLAEAQRLRGEFDKSSDLTERLGLGRSIESFLDRAAEYDRRITDR*
JGI25321J50212_10092118	JGI25321J50212_100921182	F094330	KSMRDLAIKSRVLGDGYYYIPVDLWPKANEPIVVHKHDWTVISSIPRTTRTSKKGAVAK*
JGI25321J50212_10093724	JGI25321J50212_100937241	F048553	RFTIEERHLTDGKGRPVASQEDVEFHTLDADTVDDAVRLFVRKDEGELIGDVLKFPGFQAIATVRKPNGVFTLQFSPASQQFEL*
JGI25321J50212_10096335	JGI25321J50212_100963351	F001750	MMTKIEVEISGELSRQIERIVRDGWFPSEEALAQEALQQFVEAKSFLGDSPRMLKRFAADALNESKPDTALKFVDRGLSLLATQEHPDLTLYQRLVELRVQILMVLGRGSEALEALEDARELLPNNPAITR
JGI25321J50212_10109397	JGI25321J50212_101093972	F043351	AGVFAVFSAVYGGFRGFLGLTCSAAVTMISFLWLEEIVDVLLQPAAHLHARRLTLRTLARFALLGVALTVTIIIARFNAVSVLLGFSIIVVGICGEALYSLYRSFAG*
JGI25321J50212_10117500	JGI25321J50212_101175001	F068101	MSERFPDEHERAAAGLDFDTSALFENAAEWGTRMIENGPEALLDEIEEMLPEAWREQIQTFPIVAVALGFGVGVFLGMKKSHEVIAAGTSLVSAAAMANVNQVMDKVKEGR*
JGI25321J50212_10127936	JGI25321J50212_101279361	F001750	VRDGWFPSEEALAQEALQQFVEAKSFLGDSPRMLKRFAADALNESKPDTALKFVDRGLSLLATQEHPDLNLYQRLIELRVQILMVLGRGSEALEALEDARELLPNNPAITRWIDRVRKTGLPATVGD*
JGI25321J50212_10128810	JGI25321J50212_101288101	F097442	FKEFDQRNYDEILGLFENLRALESQIVGIFVAQEMSGTRYVFTD*
JGI25321J50212_10137126	JGI25321J50212_101371262	F039059	MSAVAAAPGTGLTGQQLGLIFQYTVEAYKVFQKFAENVPNPVARTMFKQFAVDEREARDLLEIKEAAIEGSKVRVTLGADMIFNELLEGEMSFRETAEFLIARERTMQRKVRELIGSAGAGDRNLLL
JGI25321J50212_10138418	JGI25321J50212_101384181	F013826	MAVCWRCPRCNEVSCEEDVNAQGHPLACDHCERPFLPQQTICVICDAPNPWARRDSLHYWCRECGNTQTFYGYTATA*
JGI25321J50212_10151972	JGI25321J50212_101519721	F007509	SLFTEGKILEAIAKLRDLVAQARREDPKSPAEIHYGRYMFAIPEEIRQMIGILSWVRVNNVNVRQSMQYNRFKDTVADRLGDYLKSHGIVRQRPHPFPLYKKWEAARGYSEADLFRMLSACADLEIKRKSGGMPIDLGVETFLLQRIRSSR*
JGI25321J50212_10154986	JGI25321J50212_101549862	F075470	HFDRFNLNAQEGYLVSLIDGRLSIQKLIILSPFDPFTTIFILAKLQQEKAITVP*
JGI25321J50212_10157269	JGI25321J50212_101572691	F096021	TRYVRQAMVEQKSGSSMISAAAERMIEMIHEIFQVAANQAGESEKIVLTMQQVRSIADGNRSAAAEMSDAINLLNDAIRSLDDEVRKFRVRA*

Scaffold ID

Protein ID

Family

Sequence

JGI25321J50212_10009381

JGI25321J50212_100093816

F041974

MDSMFWGLFGLFAAFVVLLAVVAVLRRRVGGGFGPTERSDGSMTVSPTGYSEKHEGHGKTIGPTDNNAAKY*

JGI25321J50212_10019815

JGI25321J50212_100198152

F103798

MEPTSAPLPRPGVRPRSVRPEGNVDPHKAGDEQLALVSQDHLRSLHQPLKYGFADRSTARKGLEVAAGVAIADRLGSIRQTAGPPIGRHGYMAIVWLGSRWLQLEQPTATAIPFSQYRMLHDFGWHESGRNARQALKRTLLNLQEARWEGDVNDSVTGRKTHEDHFGIIDRVLWPVVNEGRTERAGYIFLGSWFLEQLRHEAGAYIDWDVLRDLPPIARKLYGLLENDRFDPSDHGEEWQTYWLGDPFFTSVGSTCARERDNVA

JGI25321J50212_10042785

JGI25321J50212_100427851

F087671

MMKSCDEHKHEHRDLPCPWPDCPNSEGADDAFEVSRHTGAGKMTRAEGHFVKAPPPRKFQRAKWECEKCGAIGWTWMEEGAERRMDRCPHRKPGTVVPRR*

JGI25321J50212_10062067

JGI25321J50212_100620672

F066113

VYQNMGPEFPLRIITDDGECQVVDTPEALLESLDSIDSTDPANRVWVRDVLDRTVRLRMVGGVVEVLELWR*

JGI25321J50212_10070446

JGI25321J50212_100704462

F097999

MENCSYCGTPFPRTRKTRKYCTNRCRTNACLDKKPRLKAADLEALHGVLHAEFASLEEMRERLRLILAPEMPPIPLVDGRAAIPRLD*

JGI25321J50212_10080170

JGI25321J50212_100801701

F065095

MAGTEQKEVIERSIVRARDGVGDRIDELDRHLRTNLDPKTIAKTYAPQMIAGGAVLGVIVGFGLPKVFRKLVTWGVPLAIVAMTIKNARERDELEGLS*

JGI25321J50212_10087018

JGI25321J50212_100870182

F001931

MTNEALQQQRLDILSGVVSTLLSELKGGSGDKDRRRQVEEWMRTLAEKYPEFEIEAGLRDYYLAEAQRLRGEFDKSSDLTERLGLGRSIESFLDRAAEYDRRITDR*

JGI25321J50212_10092118

JGI25321J50212_100921182

F094330

KSMRDLAIKSRVLGDGYYYIPVDLWPKANEPIVVHKHDWTVISSIPRTTRTSKKGAVAK*

JGI25321J50212_10093724

JGI25321J50212_100937241

F048553

RFTIEERHLTDGKGRPVASQEDVEFHTLDADTVDDAVRLFVRKDEGELIGDVLKFPGFQAIATVRKPNGVFTLQFSPASQQFEL*

JGI25321J50212_10096335

JGI25321J50212_100963351

F001750

MMTKIEVEISGELSRQIERIVRDGWFPSEEALAQEALQQFVEAKSFLGDSPRMLKRFAADALNESKPDTALKFVDRGLSLLATQEHPDLTLYQRLVELRVQILMVLGRGSEALEALEDARELLPNNPAITR

JGI25321J50212_10109397

JGI25321J50212_101093972

F043351

AGVFAVFSAVYGGFRGFLGLTCSAAVTMISFLWLEEIVDVLLQPAAHLHARRLTLRTLARFALLGVALTVTIIIARFNAVSVLLGFSIIVVGICGEALYSLYRSFAG*

JGI25321J50212_10117500

JGI25321J50212_101175001

F068101

MSERFPDEHERAAAGLDFDTSALFENAAEWGTRMIENGPEALLDEIEEMLPEAWREQIQTFPIVAVALGFGVGVFLGMKKSHEVIAAGTSLVSAAAMANVNQVMDKVKEGR*

JGI25321J50212_10127936

JGI25321J50212_101279361

F001750

VRDGWFPSEEALAQEALQQFVEAKSFLGDSPRMLKRFAADALNESKPDTALKFVDRGLSLLATQEHPDLNLYQRLIELRVQILMVLGRGSEALEALEDARELLPNNPAITRWIDRVRKTGLPATVGD*

JGI25321J50212_10128810

JGI25321J50212_101288101

F097442

FKEFDQRNYDEILGLFENLRALESQIVGIFVAQEMSGTRYVFTD*

JGI25321J50212_10137126

JGI25321J50212_101371262

F039059

MSAVAAAPGTGLTGQQLGLIFQYTVEAYKVFQKFAENVPNPVARTMFKQFAVDEREARDLLEIKEAAIEGSKVRVTLGADMIFNELLEGEMSFRETAEFLIARERTMQRKVRELIGSAGAGDRNLLL

JGI25321J50212_10138418

JGI25321J50212_101384181

F013826

MAVCWRCPRCNEVSCEEDVNAQGHPLACDHCERPFLPQQTICVICDAPNPWARRDSLHYWCRECGNTQTFYGYTATA*

JGI25321J50212_10151972

JGI25321J50212_101519721

F007509

SLFTEGKILEAIAKLRDLVAQARREDPKSPAEIHYGRYMFAIPEEIRQMIGILSWVRVNNVNVRQSMQYNRFKDTVADRLGDYLKSHGIVRQRPHPFPLYKKWEAARGYSEADLFRMLSACADLEIKRKSGGMPIDLGVETFLLQRIRSSR*

JGI25321J50212_10154986

JGI25321J50212_101549862

F075470

HFDRFNLNAQEGYLVSLIDGRLSIQKLIILSPFDPFTTIFILAKLQQEKAITVP*

JGI25321J50212_10157269

JGI25321J50212_101572691

F096021

TRYVRQAMVEQKSGSSMISAAAERMIEMIHEIFQVAANQAGESEKIVLTMQQVRSIADGNRSAAAEMSDAINLLNDAIRSLDDEVRKFRVRA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300003366: Deep subsurface microbial communities from Mt. Terri, Switzerland - Autotrophic microbial communities BRH/23

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences