Basic Information | |
---|---|
Family ID | F097442 |
Family Type | Metagenome |
Number of Sequences | 104 |
Average Sequence Length | 46 residues |
Representative Sequence | DFKEFDQRNYDEILGLFENLRSLETQLVGIFVPQETSATRYVFTE |
Number of Associated Samples | 99 |
Number of Associated Scaffolds | 104 |
Quality Assessment | |
---|---|
Transcriptomic Evidence | No |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 0.96 % |
% of genes near scaffold ends (potentially truncated) | 97.12 % |
% of genes from short scaffolds (< 2000 bps) | 98.08 % |
Associated GOLD sequencing projects | 94 |
AlphaFold2 3D model prediction | No |
Hidden Markov Model |
---|
|
Powered by Skylign |
Most Common Taxonomy | |
---|---|
Group | Bacteria (100.000 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
---|---|
GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (17.308 % of family members) |
Environment Ontology (ENVO) | Unclassified (34.615 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (44.231 % of family members) |
⦗Top⦘ |
Full Alignment |
---|
Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58 |
Powered by MSAViewer |
⦗Top⦘ |
Predicted Topology & Secondary Structure | |||||
---|---|---|---|---|---|
Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 46.67% β-sheet: 8.89% Coil/Unstructured: 44.44% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
|||||
Powered by Feature Viewer |
⦗Top⦘ |
⦗Top⦘ |
Visualization |
---|
All Organisms Unclassified |
Powered by ApexCharts |
⦗Top⦘ |
Visualization |
---|
Freshwater Sediment Sediment Soil Soil Vadose Zone Soil Terrestrial Soil Serpentine Soil Grasslands Soil Surface Soil Soil Agricultural Soil Sugarcane Root And Bulk Soil Permafrost Soil Grasslands Soil Sub-Biocrust Soil Soil Rice Paddy Soil Corn, Switchgrass And Miscanthus Rhizosphere Switchgrass Rhizosphere Soil Soil Deep Subsurface Arabidopsis Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Corn, Switchgrass And Miscanthus Rhizosphere Miscanthus Rhizosphere Miscanthus Rhizosphere Plant Roots Populus Rhizosphere Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Miscanthus Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere |
Powered by ApexCharts |
⦗Top⦘ |
Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI10216J12902_1016922801 | 3300000956 | Soil | MVLEENFRDFKEFDQRNYDEILGLFENLRALESQLVGIFVAQETSGSRYVFTN* |
A2065W1_116925261 | 3300001537 | Permafrost | RNYDEILGLFENLRALETQLVGIFVSQETSATRYVFTD* |
A2135W6_11025292 | 3300001566 | Permafrost | NYDELLGMFENLRSLESQLLGIFVSQETSATRYVFTK* |
JGI24743J22301_100792702 | 3300001991 | Corn, Switchgrass And Miscanthus Rhizosphere | FRDFKEFDQRNYDEILGLFENLRALETQLVGIFVPQETSATRYVFTE* |
soilL2_100148124 | 3300003319 | Sugarcane Root And Bulk Soil | FDQRNYDEILGLFENLRALETQLVGIFVSQETSATRYVFTD* |
JGI25321J50212_101288101 | 3300003366 | Deep Subsurface | FKEFDQRNYDEILGLFENLRALESQIVGIFVAQEMSGTRYVFTD* |
Ga0062589_1019369201 | 3300004156 | Soil | VLEENFRDFKEFDQRNYDELLGLFENLRSLETQLVGIFVPQETSASRYIFTE* |
Ga0062590_1021683182 | 3300004157 | Soil | ENFRDFKEFDQRNYDEILGLFENLRALESQLVGIFVAQETSGTRYVFTN* |
Ga0066671_101290882 | 3300005184 | Soil | FKEFDQRNYDELLVLFENLRSLETQLVGIFVPQETSASRYIFTE* |
Ga0066671_104423951 | 3300005184 | Soil | NFRDFKEFDQRNYDEILGLFENLRALESQLVGIFVPQETSATRYVFAN* |
Ga0066671_108624202 | 3300005184 | Soil | LEDNFRDFKEFDQRNYDELLGLFENLRSLETQLVGIFVPQETSATRYVFTE* |
Ga0066676_107622951 | 3300005186 | Soil | NFRDFKEFDQRNYDEILGLFENLRSLESQLVGIFVSQETSATRYVFTE* |
Ga0070689_1002745101 | 3300005340 | Switchgrass Rhizosphere | ENFRDFKEFDQRNYDELLGLFENLRSMETQLVGIFVSQETQASRYVFTQ* |
Ga0070692_108373671 | 3300005345 | Corn, Switchgrass And Miscanthus Rhizosphere | FDQRNYDELLGLFENLRSLEIQLVGIFVPQETSASRYIFTE* |
Ga0070674_1004079292 | 3300005356 | Miscanthus Rhizosphere | DFKEFDQRNYDEILGLFENLRALETQLVGIFVAQETSATRYVFTE* |
Ga0066682_106372401 | 3300005450 | Soil | RDFKEFDQRNYDELLGLFENLRSLETQLVGIFVPQETSASRYIFTE* |
Ga0070678_1008054442 | 3300005456 | Miscanthus Rhizosphere | EFDQRNYDELLGLFENLRSLETQLVGIFVPQETSASRYIFTE* |
Ga0070698_1003499692 | 3300005471 | Corn, Switchgrass And Miscanthus Rhizosphere | QRNYDEILGLFENLRALESQLVGIFVSSETTAARYVFTE* |
Ga0070699_1014620061 | 3300005518 | Corn, Switchgrass And Miscanthus Rhizosphere | FKEFDQRNYDEILGLFENLRALEQQLVGIFVSQETSATRYVFTD* |
Ga0070697_1003732201 | 3300005536 | Corn, Switchgrass And Miscanthus Rhizosphere | EKVLEDNFRDFKEFDQRNYDEILGLFENLRSLETQLVGIFVPQETSATRYVFTE* |
Ga0070730_107394522 | 3300005537 | Surface Soil | FKEFDQRNYDEILGLFENLRSLETQLVGIFVPQEMSATRYVFTE* |
Ga0070696_1011930992 | 3300005546 | Corn, Switchgrass And Miscanthus Rhizosphere | NFRDFKEFDQRNYDEILGLFENLRSLETQLVGIFVSQETSAARYVFTE* |
Ga0070704_1004917792 | 3300005549 | Corn, Switchgrass And Miscanthus Rhizosphere | FKEFDQRNYDEILGLFENLRSLETQLVGIFVPQETSATRYVFTE* |
Ga0070704_1013270052 | 3300005549 | Corn, Switchgrass And Miscanthus Rhizosphere | EENFRDFKEFDQRNYDEILGLFENLRALESQLVGIFVAQETSGTRYVFTN* |
Ga0066701_102378911 | 3300005552 | Soil | EDNFRDFKEFDQRNYDEILGLFENLRSLETQLVGIFVPQETSATRYVFTE* |
Ga0066661_108613332 | 3300005554 | Soil | DQRNYDEILGLFENLRSMETQLVGIFVPQETSATRYVFTE* |
Ga0066707_106786302 | 3300005556 | Soil | ENFRDFKEFDQRNYDELLGLFENLRSLETQLVGIFVPQETSASRYIFTE* |
Ga0066700_103265611 | 3300005559 | Soil | NYDELLGLFENLRSLETQLVGIFVPQETSASRYIFTE* |
Ga0066699_102982201 | 3300005561 | Soil | DFKEFDQRNYDEILGLFENLRSLETQLVGIFVPQETSATRYVFTE* |
Ga0066703_104351881 | 3300005568 | Soil | RDFKEFDQRNYDEILGLFENLRSLETQLVGIFVPQETSAARYVFTE* |
Ga0066703_108610961 | 3300005568 | Soil | FRDFKEFDQRNYDELLGLFENLRSLETQLVGIFVPQETSASRYIFTE* |
Ga0068857_1018711631 | 3300005577 | Corn Rhizosphere | NFRDFKEFDQRNYDEILGLFENLRAMETQLVGLFVPQETSATRYVFTE* |
Ga0066654_101747802 | 3300005587 | Soil | FDQRNYDELLGLFENLRSLETQLVGMFVPQETSATRYVFTE* |
Ga0068864_1013456872 | 3300005618 | Switchgrass Rhizosphere | RDFKEFDQRNYDEILGLFENLRALEGQLVGIFVSSETSAARYVFTE* |
Ga0068870_103031782 | 3300005840 | Miscanthus Rhizosphere | KEFDQRNYDEILGLFENLRAMETQLVGIFVPQETSATRYVFTE* |
Ga0075279_101144792 | 3300005903 | Rice Paddy Soil | FRDFKEFDQRDYDEILGLFENLRSLETQLLGIFVSQKTTATRYLFTE* |
Ga0070717_107022861 | 3300006028 | Corn, Switchgrass And Miscanthus Rhizosphere | FDQRNYDEILGLFENLRSLETQLVGIFVPQETSATRYVFTE* |
Ga0066656_102557772 | 3300006034 | Soil | GEKVIEDNFRDFKEFDQRNYDEILGLFENLRSMETQLVGIFVPQETSATRYVFTE* |
Ga0068871_1003039361 | 3300006358 | Miscanthus Rhizosphere | FKEFDQRNYDEILGLFENLRSLESQLVGIFVPQETTASRYVFTE* |
Ga0066660_107983531 | 3300006800 | Soil | KEFDQRNYDEILGLFENLRSMETQLVGIFVPQETSATRYVFTE* |
Ga0075434_1020122691 | 3300006871 | Populus Rhizosphere | EKVLEENFRDFKEFDQRNYDELLGLFENLRSLETQLVGIFVPQETSASRYIFTE* |
Ga0075436_1006901471 | 3300006914 | Populus Rhizosphere | DNFRDFKEFDQRNYDELLGLFENLRSLETQLVGIFVPQETSASRYVFTE* |
Ga0079219_113005331 | 3300006954 | Agricultural Soil | DFKEFDQRNYDELLGLFENLRSLETQLVGMFVPQETSATRYVFTE* |
Ga0079218_105438161 | 3300007004 | Agricultural Soil | DEILGLFENLRALESQLVGIFVAQETSGSRYVFTN* |
Ga0099828_116347681 | 3300009089 | Vadose Zone Soil | DELLGLFENLRSLETQLIGIFVPQETSASRYIFTE* |
Ga0105245_132961771 | 3300009098 | Miscanthus Rhizosphere | TGEKVLEENFRDFKEFDQRNYDELLGLFENLRSLETQLVGIFVPQETSATRYVFTE* |
Ga0066709_1015281391 | 3300009137 | Grasslands Soil | EKVLEDNFRDFKEFDQRNYDEILGLFENLRSLETQLVGIFVPQETSAARYVFTE* |
Ga0114129_116379481 | 3300009147 | Populus Rhizosphere | DEILGLFENLRSLETQLVGIFVPQETSAARYVFTE* |
Ga0075423_124439251 | 3300009162 | Populus Rhizosphere | LEDNFRDFKEFDQRNYDEILGLFENLRSLETQLVGIFVPQETSAARYVFTE* |
Ga0105347_14366152 | 3300009609 | Soil | EENFRDFKEFDQRNYDEILGLFENLRALESQLVGIFVAQETSGTRYVFTD* |
Ga0126309_108231082 | 3300010039 | Serpentine Soil | QRNYDELLGLFENLRSLETQLVGIFVPQETSASRYIFTE* |
Ga0134084_104350451 | 3300010322 | Grasslands Soil | DQRNYDEILGLFENLRAMETQLVGIFVPQETSATRYVFTE* |
Ga0134063_104838481 | 3300010335 | Grasslands Soil | QRQYDEILGLFENLRSLETQLVGIFVPQETSGSRYVFTE* |
Ga0134127_129011091 | 3300010399 | Terrestrial Soil | LEDNFRDFKEFDQRNYDEILGLFENLRSMETQLVGIFVPQETSATRYVFTE* |
Ga0134122_120219352 | 3300010400 | Terrestrial Soil | DELLGLFENLRSLETQLVGIFVPQETSATRYVFTE* |
Ga0134121_105775743 | 3300010401 | Terrestrial Soil | RNYDEILGLFENLRSLETQLVGIFVPQETSATRYVFTE* |
Ga0137433_11386522 | 3300011440 | Soil | FKEFDQRNYDEILGLFENLRALEQQLVGIFVAQETSATRYVFTD* |
Ga0120134_10771852 | 3300012004 | Permafrost | GEKVLEDNFRDFKEFDQRNYDEILGLFENLRSLETQLVGIFVPQETSATRYVFTE* |
Ga0137380_108497121 | 3300012206 | Vadose Zone Soil | VLEDNFRDFKEFDQRNYDEILGLFENLRSLETQLVGIFVPQETSATRYVFTE* |
Ga0137381_107724852 | 3300012207 | Vadose Zone Soil | LEDNFRDFKEFDQRNYDEILGLFENLRALETQLVGIFVPQETSAARYVFTE* |
Ga0137376_117417132 | 3300012208 | Vadose Zone Soil | DNFRDFKEFDQRNYDEILGLFENLRSLETQLVGIFVPQETSAARYVFTE* |
Ga0137367_107795251 | 3300012353 | Vadose Zone Soil | EILGLFENLRSLEQQLVGIFVSQETSATRYVFTD* |
Ga0137407_112477421 | 3300012930 | Vadose Zone Soil | EFDQRNYDEILGLFENLRSLETQLVGIFVSQESSAMRYVFTES* |
Ga0134110_101384012 | 3300012975 | Grasslands Soil | YDEILGLFENLRSLETQLVGIFVPQETSGSRYVFTE* |
Ga0157378_131873102 | 3300013297 | Miscanthus Rhizosphere | FRDFKEFDQRNYDEILGLFENLRSLEAQLVGIFVSQETSASRYVFTE* |
Ga0120109_10307681 | 3300014052 | Permafrost | KVLEDNFRDFKAFDQRNYDEILGLFENLRSLETQLVGIFVPQETSATRYVFTE* |
Ga0157377_112396461 | 3300014745 | Miscanthus Rhizosphere | DFKEFDQRNYDEILGLFENLRALEGQLVGIFVSSETSAQRYMFTE* |
Ga0120170_10226371 | 3300014823 | Permafrost | DKVLEENFRDFKEFDQRNYDEILGLFENLRSLEAQLLGIFVSQETSASRYVFTE* |
Ga0157376_124619012 | 3300014969 | Miscanthus Rhizosphere | DQRNYDEILGLFENLRSMEAQLVGIFVSQETSASRYVFTE* |
Ga0137412_112157242 | 3300015242 | Vadose Zone Soil | GEKVLEDNFRDFKEFDQRNYDEILGLFENLRSMETQLVGIFVPQETSATRYVFTE* |
Ga0134085_101460942 | 3300015359 | Grasslands Soil | VEENFRDFKEFDQRNYDEILGLFENLRSLEQQLVGIFVSQETSVTRYVFTD* |
Ga0134085_104886801 | 3300015359 | Grasslands Soil | ENFRDFKEFDQRNYDEILGLFENLRALETQLVGIFVSQETSATRYVFTE* |
Ga0132257_1036335242 | 3300015373 | Arabidopsis Rhizosphere | FDQRQYDEILGLFENLRSLETQLVGIFVPQETSGSRYVFTE* |
Ga0187821_100471751 | 3300017936 | Freshwater Sediment | KEFDQRNYDEILGLFENLRSLETQLVGIFVPQETSATRYVFTE |
Ga0066667_122990062 | 3300018433 | Grasslands Soil | DELLGLFENLRSLETQLVGIFVPQETSATRYVFTE |
Ga0190268_108294021 | 3300018466 | Soil | GEMILEENFRDFKEFDQRNYDEILGLFENLRALEAQLVGIFVAQETSGTRYVFTE |
Ga0190270_107170281 | 3300018469 | Soil | RNYDEILGLFENLRSLETQLVGIFVSQETSAARYVFTE |
Ga0193609_10778872 | 3300018906 | Soil | VEENFRDFKEFDQRHYDEILGLFENLRALESQLVGIFVSQETSASRYVFSR |
Ga0190273_103404041 | 3300018920 | Soil | NFRDFKEFDQRNYDEILGLFENLRALESQLVGIFVAQETSGSRYVFTN |
Ga0193722_11345272 | 3300019877 | Soil | NEVLGLFENLRSMETQLVGIFVPQETSATRYVFTE |
Ga0179590_10861221 | 3300020140 | Vadose Zone Soil | DTGEKVLEENFRDFKEFDQRNYDEILGLFENLRSLEAQLVGIFVSQETSASRYVFTE |
Ga0193699_104156752 | 3300021363 | Soil | RNYDEILGLFENLRALESQLIGIFVAQETSGSRYVFTN |
Ga0213874_101064232 | 3300021377 | Plant Roots | DSGEKVLEDNFRDFKEFDQRNYDELLGLFENLRSLETQLVGMFVPQETSATRYVFTE |
Ga0224512_103134091 | 3300022226 | Sediment | RDFKEYAQRDYDEILGLFENLRSLESQILSIFVAQERSATRFLFVP |
Ga0247677_10167212 | 3300024245 | Soil | KVLEDNFRDFKEFDQRNYDEILGLFENLRSMETQLVGIFVPQETSATRYVFTE |
Ga0209640_106132571 | 3300025324 | Soil | DNFRDFKEFDQRNYDEILGLFENLRSLETQLLGIFVSQETSATRFVFRH |
Ga0207684_105922532 | 3300025910 | Corn, Switchgrass And Miscanthus Rhizosphere | KVLEENFRDFKEFDQRNYDEILGLFENLRSMEAQLVGIFVSQETSASRYVFTE |
Ga0207681_114853592 | 3300025923 | Switchgrass Rhizosphere | FKEFDQRNYDEILGLFENLRSLETQLVGIFVPQETSASRYVFTE |
Ga0207687_114905701 | 3300025927 | Miscanthus Rhizosphere | TGEKVLEENFRDFKEFDQRNYDELLGLFENLRSLETQLVGIFVPQETSATRYVFTE |
Ga0207669_104356371 | 3300025937 | Miscanthus Rhizosphere | RDVKEFDQRNYDEILGLFENLRALETQLVGIFVAQETSATRYVFTE |
Ga0207704_100528342 | 3300025938 | Miscanthus Rhizosphere | LEENFRDFKEFDQRNYDEILGLFENLRSMEAQLVGIFVSQETSASRYVFTE |
Ga0207711_120389212 | 3300025941 | Switchgrass Rhizosphere | NFRDFKEFDQRNYDEILGLFENLRSLETQLVGIFVPQETSASRYVFTE |
Ga0207689_114879662 | 3300025942 | Miscanthus Rhizosphere | DFKEFDQRNYDELLGLFENLRSLETQLVGIFVPQETSATRYVFTE |
Ga0207676_113549791 | 3300026095 | Switchgrass Rhizosphere | RDFKEFDQRNYDEILGLFENLRALEGQLVGIFVSSETSAARYVFTE |
Ga0207683_113494802 | 3300026121 | Miscanthus Rhizosphere | ENFRDFKEFDQRNYDELLGLFENLRSLETQLVGIFVPQETSASRYIFTE |
Ga0209807_11601973 | 3300026530 | Soil | YDEILGLFENLRSLETQLVGIFVPQETSASRYVFTE |
Ga0209577_101408021 | 3300026552 | Soil | LEDNFRDFKEFDQRNYDELLGLFENLRSLETQLVGIFVPQETSATRYVFTE |
Ga0137415_106158932 | 3300028536 | Vadose Zone Soil | VLEDNFRDFKEFDQRNYDEILGLFENLRSLETQLVGIFVPQETSAARYVFTQ |
Ga0307405_107584181 | 3300031731 | Rhizosphere | EENFRDFKEFDQRNYDEILGLFENLRSLETQLVGIFVSRETSATRYVFTD |
Ga0326597_112555232 | 3300031965 | Soil | VEENFRDFKEFDQRNYDEILGLFENLRSLESQLVGIFVPQETSATRYVFTE |
Ga0307416_1025801122 | 3300032002 | Rhizosphere | TGEKVLEENFRDFKEFDQRNYDEILGLFENLRALETQLVGIFVSRETSATRYVFTD |
Ga0334961_034140_741_872 | 3300034143 | Sub-Biocrust Soil | KEFDQRNYDEILGLFENLRALESQLVGIFVAQETSGTRYVFTE |
Ga0372943_0930706_409_576 | 3300034268 | Soil | GEKVVEENFRDFKEFDQRNYDEILGLFENLRALEAQLVGIFVPQETSASRYVFTD |
Ga0372946_0225099_2_136 | 3300034384 | Soil | FKEFDQRNYDEILGLFENLRALETQLVGIFVAQETSGSRYVFTN |
⦗Top⦘ |