3300003331: Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, USA - AR20-2-R (Metagenome Metatranscriptome, Counting Only)

Overview

Basic Information

• IMG/M Taxon OID: 3300003331
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110114 | Gp0061321 | Ga0006572
• Sample Name: Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, USA - AR20-2-R (Metagenome Metatranscriptome, Counting Only)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 165734446
• Sequencing Scaffolds: 9
• Novel Protein Genes: 11
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → Proteobacteria	3
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa
• Type: Engineered
• Taxonomy: Engineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Ionic Liquid And High Solid Enriched → Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Joint BioEnergy Institute, California, USA
• Coordinates
  • Lat. (^o): 38.5402
  • Long. (^o): -121.75
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001784	Metagenome / Metatranscriptome	635	Y
F022024	Metagenome / Metatranscriptome	216	Y
F034478	Metagenome / Metatranscriptome	174	Y
F035426	Metagenome / Metatranscriptome	172	N
F064906	Metagenome / Metatranscriptome	128	Y
F072453	Metagenome / Metatranscriptome	121	Y
F074317	Metagenome / Metatranscriptome	119	Y
F077823	Metagenome / Metatranscriptome	117	Y
F097375	Metagenome / Metatranscriptome	104	Y
F098955	Metagenome / Metatranscriptome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0006572J49612_1009659	All Organisms → cellular organisms → Bacteria	965
Ga0006572J49612_1046118	All Organisms → cellular organisms → Bacteria	630
Ga0006572J49612_1058943	All Organisms → cellular organisms → Bacteria	618
Ga0006572J49612_1059100	All Organisms → cellular organisms → Bacteria → Proteobacteria	855
Ga0006572J49612_1081908	All Organisms → cellular organisms → Bacteria → Proteobacteria	603
Ga0006572J49612_1084467	Not Available	872
Ga0006572J49612_1114371	All Organisms → cellular organisms → Bacteria → Proteobacteria	1080
Ga0006572J49612_1130619	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	509
Ga0006572J49612_1160275	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	550

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0006572J49612_1009659	Ga0006572J49612_10096591	F072453	LRPRSEGFVEISGWTVIALAVVVGLNTLFIAGICIALFLVKARLDDALARAEPILNRATDTLARVEETTAHLQQKVDEVLDKTTHLVDQVSERVDTTTAIAEEAVTEPLIGAASLMAGINRGLRAYAERSHEKGDGKS*
Ga0006572J49612_1011238	Ga0006572J49612_10112381	F022024	PEAGYPAAYPFRRIVRAVPIGNDDSISPGTSPAPVGFNLGAPSACVLGATAAPDRYGVRNGSSNSTAILSGLLAAIWSRTPYARLTVDEFLAEVIEKRLHGSPRRSKPGGREPYLDGVPLADACTLADARRSALVCALENQ*
Ga0006572J49612_1046118	Ga0006572J49612_10461182	F074317	MAFPVRVCALVGRFTDPRVAESAATLVPHLRSRGVDVLLSEDAELGG
Ga0006572J49612_1058943	Ga0006572J49612_10589431	F098955	MDPSAIPVFLAGPFPVLHTARIDEIESEVELDVGLIIGGLPTILAASTFPLDETWSRVEAALASGDAKLGVAGVPHEEESVIGKHEVFPSAYVGLECANGERLILAHIRGSDPAQNAEAYAREVIGALLNGQTPAELGELIED*
Ga0006572J49612_1059100	Ga0006572J49612_10591001	F001784	SHHAGKAMGDVIHVAFGIEREWERAREHAIDGLVTIGALFGDDEALMRAKAECVYQLLRRIVEDMPPLQITTALPDDLSEGQLALVTDALKSAAHKGIQVAMMHSVEALMNSIYDLCTSKLQQPEL*
Ga0006572J49612_1068971	Ga0006572J49612_10689711	F035426	MPLGRRWQQIDVNCFWVLEQDRESYNREVYLPDAYIEAIINVGAPLMLESGYGMLELPRAFVNPLQNKPLRIRAAGFCQMISMQLYPWVVKPILNIDPDPSTARVIALDADWQRFAEYLAQIVAHRGYGEAIACLQEYVCKTAYRHKHDLTFIRTAGRLLLRSRGQIRM
Ga0006572J49612_1081908	Ga0006572J49612_10819081	F001784	MGEVIHATFGTEREWKQTRDKTVDGLLTIGTLFGDDEELMRAKADCVYHILRQIVEDIPTVQITTRLPENLSEEQLAILTESIRQAALKGIEVAMTHSVQVLMGSIYDLCTSKLKDGRC*
Ga0006572J49612_1084467	Ga0006572J49612_10844671	F034478	SMDVEHGNLIQQDRPTIVRKVDLYGSPQEGKISFDHREEAEPVGNFLAGMRIDSISLWFLRTDNQNVALQGICTSYKKLNEDNFFESFESVDDKIKNSDRDYDIVHFDDGEYIREINVTVASANNKIGAIEFVTTNKGRKVLAYGSTNANAEDGKQSEPLPPGETKKFDFLKADGDNFPGYVVGFYGQHDENHITYLGVYVAPLTEINYYARRPYILTFKKMQQDKNLINQVAANLKVEREGERFKDANLEDTDGNSSKILLYFLDASLNHPELFKAVLEYL*
Ga0006572J49612_1114371	Ga0006572J49612_11143711	F077823	DVVARSIYALGGRIGVSTQPGRYTRFKIALPATEEHASTAVA*
Ga0006572J49612_1130619	Ga0006572J49612_11306191	F097375	SGVANATRRDEIQAMEQHQTAGPNPLCEVGKTHPRDRHRMRPVEGHPGVWECSKHGIFATVIPKERAEEIERGDPFPMHDGTEGIASRTGDERPGGIIIYYRPKVG*
Ga0006572J49612_1160275	Ga0006572J49612_11602752	F064906	RELIELGYRDAMEARDELLAFMSGEKVPPAIATPTVAETSEAT*