Metagenome / Metatranscriptome Family F077823

Basic Information
Family ID	F077823
Family Type	Metagenome / Metatranscriptome
Number of Sequences	117
Average Sequence Length	40 residues
Representative Sequence	DVVARSVYALGGKIGVSTNPGKFTRFKIVLPAAEAASTAVA
Number of Associated Samples	110
Number of Associated Scaffolds	117

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	95.73 %
Associated GOLD sequencing projects	108
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.48

Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (24.786 % of family members)
Environment Ontology (ENVO)	Unclassified (24.786 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (33.333 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 11.59% β-sheet: 20.29% Coil/Unstructured: 68.12%
Feature Viewer

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Pfam ID	Name	% Frequency in 117 Family Scaffolds
PF00072	Response_reg	82.91
PF13690	CheX	11.97
PF00486	Trans_reg_C	3.42
PF00583	Acetyltransf_1	0.85
PF00528	BPD_transp_1	0.85

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	70.94 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	41.03 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.85 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.85 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Nevskiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	27.35 %
Alteromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales	3.42 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.85 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.85 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Steroidobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae	27.35 %
Alteromonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae	1.71 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.85 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.85 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Steroidobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	27.35 %
unclassified Alteromonadaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → unclassified Alteromonadaceae	0.85 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.85 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.85 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Steroidobacter denitrificans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	27.35 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	0.85 %
Alteromonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → unclassified Alteromonadaceae → Alteromonadaceae bacterium	0.85 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.85 %
Unclassified	root	N/A	0.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_17373632	All Organisms → cellular organisms → Bacteria → Proteobacteria	1438	Open in IMG/M
3300001545\|JGI12630J15595_10028549	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1158	Open in IMG/M
3300002067\|JGI24735J21928_10108938	All Organisms → cellular organisms → Bacteria → Proteobacteria	796	Open in IMG/M
3300002245\|JGIcombinedJ26739_101855266	All Organisms → cellular organisms → Bacteria → Proteobacteria	504	Open in IMG/M
3300003330\|Ga0006571J49611_1051102	All Organisms → cellular organisms → Bacteria → Proteobacteria	1649	Open in IMG/M
3300003331\|Ga0006572J49612_1114371	All Organisms → cellular organisms → Bacteria → Proteobacteria	1080	Open in IMG/M
3300004120\|Ga0058901_1406968	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1198	Open in IMG/M
3300005260\|Ga0074072_1132671	All Organisms → cellular organisms → Bacteria → Proteobacteria	616	Open in IMG/M
3300005330\|Ga0070690_100522880	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae	891	Open in IMG/M
3300005332\|Ga0066388_102471231	All Organisms → cellular organisms → Bacteria → Proteobacteria	944	Open in IMG/M
3300005347\|Ga0070668_100701001	All Organisms → cellular organisms → Bacteria	893	Open in IMG/M
3300005467\|Ga0070706_100517360	All Organisms → cellular organisms → Bacteria → Proteobacteria	1110	Open in IMG/M
3300005518\|Ga0070699_100892775	All Organisms → cellular organisms → Bacteria → Proteobacteria	814	Open in IMG/M
3300005538\|Ga0070731_10575403	All Organisms → cellular organisms → Bacteria → Proteobacteria	750	Open in IMG/M
3300005563\|Ga0068855_100266331	All Organisms → cellular organisms → Bacteria → Proteobacteria	1907	Open in IMG/M
3300005610\|Ga0070763_10298546	All Organisms → cellular organisms → Bacteria → Proteobacteria	885	Open in IMG/M
3300005718\|Ga0068866_11024093	All Organisms → cellular organisms → Bacteria	588	Open in IMG/M
3300005921\|Ga0070766_10409967	All Organisms → cellular organisms → Bacteria → Proteobacteria	889	Open in IMG/M
3300006047\|Ga0075024_100604928	All Organisms → cellular organisms → Bacteria → Proteobacteria	590	Open in IMG/M
3300006163\|Ga0070715_10850665	All Organisms → cellular organisms → Bacteria → Proteobacteria	558	Open in IMG/M
3300006173\|Ga0070716_101541990	All Organisms → cellular organisms → Bacteria → Proteobacteria	544	Open in IMG/M
3300006854\|Ga0075425_100946085	All Organisms → cellular organisms → Bacteria → Proteobacteria	984	Open in IMG/M
3300009093\|Ga0105240_10298887	All Organisms → cellular organisms → Bacteria → Proteobacteria	1842	Open in IMG/M
3300009093\|Ga0105240_11438592	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales	724	Open in IMG/M
3300009098\|Ga0105245_11939822	All Organisms → cellular organisms → Bacteria	642	Open in IMG/M
3300009146\|Ga0105091_10388644	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	693	Open in IMG/M
3300009174\|Ga0105241_11624144	All Organisms → cellular organisms → Bacteria	626	Open in IMG/M
3300009551\|Ga0105238_10985350	All Organisms → cellular organisms → Bacteria → Proteobacteria	863	Open in IMG/M
3300010043\|Ga0126380_10923847	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales	727	Open in IMG/M
3300010048\|Ga0126373_10642012	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → unclassified Alteromonadaceae → Alteromonadaceae bacterium	1117	Open in IMG/M
3300010359\|Ga0126376_10662069	All Organisms → cellular organisms → Bacteria → Proteobacteria	998	Open in IMG/M
3300010359\|Ga0126376_11619353	All Organisms → cellular organisms → Bacteria	680	Open in IMG/M
3300012349\|Ga0137387_10803387	All Organisms → cellular organisms → Bacteria	681	Open in IMG/M
3300012362\|Ga0137361_10408882	All Organisms → cellular organisms → Bacteria → Proteobacteria	1247	Open in IMG/M
3300012927\|Ga0137416_10362824	All Organisms → cellular organisms → Bacteria → Proteobacteria	1218	Open in IMG/M
3300012929\|Ga0137404_10633407	All Organisms → cellular organisms → Bacteria → Proteobacteria	963	Open in IMG/M
3300012930\|Ga0137407_12190772	All Organisms → cellular organisms → Bacteria	528	Open in IMG/M
3300012957\|Ga0164303_11284742	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300012971\|Ga0126369_12479063	All Organisms → cellular organisms → Bacteria	604	Open in IMG/M
3300012975\|Ga0134110_10200705	All Organisms → cellular organisms → Bacteria → Proteobacteria	837	Open in IMG/M
3300014489\|Ga0182018_10203838	All Organisms → cellular organisms → Bacteria → Proteobacteria	1105	Open in IMG/M
3300014968\|Ga0157379_11735309	All Organisms → cellular organisms → Bacteria	612	Open in IMG/M
3300015052\|Ga0137411_1056593	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1060	Open in IMG/M
3300015373\|Ga0132257_102634552	All Organisms → cellular organisms → Bacteria	654	Open in IMG/M
3300016404\|Ga0182037_11737975	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300017947\|Ga0187785_10668631	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
3300017993\|Ga0187823_10163048	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	711	Open in IMG/M
3300018422\|Ga0190265_12430031	All Organisms → cellular organisms → Bacteria	624	Open in IMG/M
3300019270\|Ga0181512_1328043	All Organisms → cellular organisms → Bacteria	801	Open in IMG/M
3300020027\|Ga0193752_1313627	All Organisms → cellular organisms → Bacteria → Proteobacteria	541	Open in IMG/M
3300020199\|Ga0179592_10012560	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3686	Open in IMG/M
3300020583\|Ga0210401_10902016	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	743	Open in IMG/M
3300021086\|Ga0179596_10200517	All Organisms → cellular organisms → Bacteria → Proteobacteria	971	Open in IMG/M
3300021384\|Ga0213876_10418726	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	712	Open in IMG/M
3300021402\|Ga0210385_10321705	All Organisms → cellular organisms → Bacteria → Proteobacteria	1150	Open in IMG/M
3300021474\|Ga0210390_10453364	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1082	Open in IMG/M
3300021477\|Ga0210398_10981909	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	674	Open in IMG/M
3300021560\|Ga0126371_11064852	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	949	Open in IMG/M
3300022527\|Ga0242664_1020502	All Organisms → cellular organisms → Bacteria → Proteobacteria	1035	Open in IMG/M
3300022726\|Ga0242654_10101596	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	904	Open in IMG/M
3300024288\|Ga0179589_10359693	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	662	Open in IMG/M
3300025572\|Ga0207864_1063272	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	882	Open in IMG/M
3300025914\|Ga0207671_10181329	All Organisms → cellular organisms → Bacteria	1639	Open in IMG/M
3300025914\|Ga0207671_11099518	All Organisms → cellular organisms → Bacteria	624	Open in IMG/M
3300025929\|Ga0207664_11063114	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	724	Open in IMG/M
3300025941\|Ga0207711_10489311	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	1146	Open in IMG/M
3300026035\|Ga0207703_10472637	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1174	Open in IMG/M
3300026078\|Ga0207702_10910276	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	872	Open in IMG/M
3300026359\|Ga0257163_1044954	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	702	Open in IMG/M
3300027537\|Ga0209419_1000894	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	3438	Open in IMG/M
3300027575\|Ga0209525_1139222	All Organisms → cellular organisms → Bacteria	559	Open in IMG/M
3300027603\|Ga0209331_1094200	All Organisms → cellular organisms → Bacteria	735	Open in IMG/M
3300027643\|Ga0209076_1123315	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	731	Open in IMG/M
3300027676\|Ga0209333_1141205	All Organisms → cellular organisms → Bacteria	649	Open in IMG/M
3300027727\|Ga0209328_10179092	All Organisms → cellular organisms → Bacteria	642	Open in IMG/M
3300027869\|Ga0209579_10039844	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2530	Open in IMG/M
3300028380\|Ga0268265_10705192	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	975	Open in IMG/M
3300029951\|Ga0311371_10681443	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1297	Open in IMG/M
3300030514\|Ga0268253_10144995	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	732	Open in IMG/M
3300030520\|Ga0311372_11618785	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	787	Open in IMG/M
3300030596\|Ga0210278_1136579	All Organisms → cellular organisms → Bacteria → Proteobacteria	590	Open in IMG/M
3300030743\|Ga0265461_13285036	All Organisms → cellular organisms → Bacteria	546	Open in IMG/M
3300031057\|Ga0170834_109886666	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	726	Open in IMG/M
3300031099\|Ga0308181_1175049	All Organisms → cellular organisms → Bacteria → Proteobacteria	516	Open in IMG/M
3300031122\|Ga0170822_15284526	All Organisms → cellular organisms → Bacteria	630	Open in IMG/M
3300031231\|Ga0170824_101918965	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	684	Open in IMG/M
3300031231\|Ga0170824_126284789	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	1069	Open in IMG/M
3300031474\|Ga0170818_112406220	All Organisms → cellular organisms → Bacteria	565	Open in IMG/M
3300031546\|Ga0318538_10205672	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	1052	Open in IMG/M
3300031546\|Ga0318538_10287869	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	884	Open in IMG/M
3300031616\|Ga0307508_10526361	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	779	Open in IMG/M
3300031682\|Ga0318560_10224870	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	1005	Open in IMG/M
3300031724\|Ga0318500_10449448	All Organisms → cellular organisms → Bacteria	644	Open in IMG/M
3300031748\|Ga0318492_10815062	All Organisms → cellular organisms → Bacteria → Proteobacteria	503	Open in IMG/M
3300031751\|Ga0318494_10515295	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	697	Open in IMG/M
3300031754\|Ga0307475_11040748	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	642	Open in IMG/M
3300031764\|Ga0318535_10199909	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	894	Open in IMG/M
3300031765\|Ga0318554_10568271	All Organisms → cellular organisms → Bacteria	640	Open in IMG/M
3300031778\|Ga0318498_10275838	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	756	Open in IMG/M
3300031797\|Ga0318550_10423177	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	644	Open in IMG/M
3300031798\|Ga0318523_10277322	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	837	Open in IMG/M
3300031831\|Ga0318564_10179291	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	944	Open in IMG/M
3300031832\|Ga0318499_10406479	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300031835\|Ga0318517_10414222	All Organisms → cellular organisms → Bacteria	609	Open in IMG/M
3300031894\|Ga0318522_10110045	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	1024	Open in IMG/M
3300031912\|Ga0306921_10178952	All Organisms → cellular organisms → Bacteria → Proteobacteria	2486	Open in IMG/M
3300031959\|Ga0318530_10240085	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	746	Open in IMG/M
3300031959\|Ga0318530_10377681	All Organisms → cellular organisms → Bacteria	587	Open in IMG/M
3300032044\|Ga0318558_10435454	All Organisms → cellular organisms → Bacteria	653	Open in IMG/M
3300032065\|Ga0318513_10358558	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	710	Open in IMG/M
3300032089\|Ga0318525_10703626	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300032126\|Ga0307415_101190194	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	718	Open in IMG/M
3300032180\|Ga0307471_101050628	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	981	Open in IMG/M
3300032261\|Ga0306920_104446894	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300032515\|Ga0348332_10408076	All Organisms → cellular organisms → Bacteria	594	Open in IMG/M
3300032893\|Ga0335069_10125580	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3207	Open in IMG/M
3300032893\|Ga0335069_12709986	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	78.63%
Host-Associated	Host-Associated	18.80%
Engineered	Engineered	2.56%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	75.21%
Plants	Host-Associated → Plants	18.80%
Aquatic	Environmental → Aquatic	3.42%
Lab Enrichment	Engineered → Lab Enrichment	2.56%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	72.65%
Rhizosphere	Host-Associated → Plants → Rhizosphere	10.26%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.98%
Freshwater	Environmental → Aquatic → Freshwater	2.56%
Defined Media	Engineered → Lab Enrichment → Defined Media	2.56%
Peat	Environmental → Terrestrial → Peat	1.71%
Roots	Host-Associated → Plants → Roots	1.71%
Sediment	Environmental → Aquatic → Sediment	0.85%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.85%
Phylloplane	Host-Associated → Plants → Phylloplane	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	54.70%
Loam	Environmental → Terrestrial → Soil → Loam	14.53%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.40%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.13%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.42%
Unclassified	Engineered → Lab Enrichment → Defined Media → Unclassified	2.56%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.71%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.71%
Unclassified	Host-Associated → Plants → Roots → Unclassified	1.71%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.85%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.85%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.85%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	33.33%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.66%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.40%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.40%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.13%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.13%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.56%
Unclassified	Engineered → Lab Enrichment → Defined Media → Unclassified → Unclassified	2.56%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.71%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	1.71%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.85%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.85%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.85%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.85%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.85%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.85%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.85%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	24.79%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.55%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	6.84%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.13%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	5.13%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	4.27%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.42%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.56%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.56%
Ionic Liquid And High Solid Enriched	Engineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Ionic Liquid And High Solid Enriched	2.56%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.71%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.71%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.71%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.71%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.71%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.71%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.85%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.85%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.85%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.85%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.85%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.85%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.85%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.85%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.85%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.85%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.85%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.85%
Ectomycorrhiza	Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza	0.85%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.85%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.85%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1	Environmental	Open in IMG/M
3300002067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1	Host-Associated	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003330	Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, USA - AR20-1-R (Metagenome Metatranscriptome, Counting Only)	Engineered	Open in IMG/M
3300003331	Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, USA - AR20-2-R (Metagenome Metatranscriptome, Counting Only)	Engineered	Open in IMG/M
3300004120	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF238 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005260	Microbial communities on the surface of kaolinite enhanced biochar from soil with fertiliser in Sydney, Australia	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009146	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015052	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300017993	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_3	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300019270	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020027	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1c1	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021384	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9	Host-Associated	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022527	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025572	Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, USA - AR20-2-D (SPAdes)	Engineered	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026359	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-A	Environmental	Open in IMG/M
3300027537	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027575	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O1 (SPAdes)	Environmental	Open in IMG/M
3300027603	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027643	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)	Environmental	Open in IMG/M
3300027676	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3 (SPAdes)	Environmental	Open in IMG/M
3300027727	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030514	Agave microbial communities from Guanajuato, Mexico - Mg.Ma.rz (v2)	Host-Associated	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030596	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO135-VCO085SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030743	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VCO Co-assembly	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031099	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_152 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031122	Oak Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031616	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM	Host-Associated	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_03557280	2088090014	Soil	GVGMDVVARSVYALGGKIGVSTHPGKFTRFKIVLPAAEPVSTAVA
JGI12630J15595_100285494	3300001545	Forest Soil	YALGGKIGVSTHPGRFTRFKILLPAAAQAVSTAVA*
JGI24735J21928_101089383	3300002067	Corn Rhizosphere	DVVARSVYALGGKIGVSTNPGKFTRFKIVLPAAEAANSGAAAAAV*
JGIcombinedJ26739_1018552661	3300002245	Forest Soil	RSVYALGGKIGVSTHPGRFTRFKILLPAAHAVSTAVA*
Ga0006571J49611_10511021	3300003330	Ionic Liquid And High Solid Enriched	VVARSIYALGGRIGVSTQPGRYTRFKIALPATEEHASTAVA*
Ga0006572J49612_11143711	3300003331	Ionic Liquid And High Solid Enriched	DVVARSIYALGGRIGVSTQPGRYTRFKIALPATEEHASTAVA*
Ga0058901_14069681	3300004120	Forest Soil	MDVVARSVYALGGKIGVSTHPGRYTRFKISLPAGAASSAVA*
Ga0074072_11326711	3300005260	Soil	VARSVYALGGKIGVSTNPGKFTRFKIVLPAAEAANSGAAAAAV*
Ga0070690_1005228801	3300005330	Switchgrass Rhizosphere	VVARSVYALGGKIGVSTNPGKFTRFKIVLPAAEAANSGAAAAAV*
Ga0066388_1024712313	3300005332	Tropical Forest Soil	GVGMDVVARSVYALGGKIGVSTHPGRFTRFKIVLPVSDAVGSTAVA*
Ga0070668_1007010011	3300005347	Switchgrass Rhizosphere	VAKSVYAIGGKIGVTTNPGKFTRFKVSLPASSEEASTAVA*
Ga0070706_1005173601	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	VAKSVYAIGGKIGVTTNPGKFTRFKVSLPATEEANTAVA*
Ga0070699_1008927753	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	VGMDVVARSVYALGGKIGVSTHPGKFTRFKIVLPSAEAVSTAVA*
Ga0070731_105754033	3300005538	Surface Soil	ALGGKIGVSTHPGRFTRFKIVLPVSETLGSTAVA*
Ga0068855_1002663316	3300005563	Corn Rhizosphere	SVYALGGKIGVSTHPGKFTRFKIVLPATDAVGSTAVA*
Ga0070763_102985461	3300005610	Soil	YALGGKIGVSTNPGKFTRFKIVLPAAEATSSTAVA*
Ga0068866_110240932	3300005718	Miscanthus Rhizosphere	SVYAIGGKIGVTTNPGKFTRFKVSLPASSEEASTAVA*
Ga0070766_104099673	3300005921	Soil	RSVYALGGKIGVSTHPGKYTRFKISLPGGQAAGNSAVA*
Ga0075024_1006049282	3300006047	Watersheds	VYALGGKIGVSTHPGKYTRFKIVLPAADAVGSTAVA*
Ga0070715_108506651	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	VYALGGKIGVSTHPGKFTRFKIVLPSAEAVSTAVA*
Ga0070716_1015419901	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	DVVARSVYALGGKIGVSTNPGKFTRFKIVLPAAESANAAVAV*
Ga0075425_1009460851	3300006854	Populus Rhizosphere	GMDVVARSVYALGGKIGVSTHPGKFTRFKIVLPATDAVGSTAVA*
Ga0105240_102988871	3300009093	Corn Rhizosphere	RSVYALGGKIGVSTNPGKFTRFKIVLPAAEAASTAVA*
Ga0105240_114385923	3300009093	Corn Rhizosphere	VGMDVVARSVHALGGKIGVSTNPGKFTRFKIALPAAEAANTAVA*
Ga0105245_119398222	3300009098	Miscanthus Rhizosphere	SVYALGGKIGVSTNPGKFTRFKIVLPAAEAASTAVA*
Ga0105091_103886441	3300009146	Freshwater Sediment	RSVYAAGGRIGVATGLGKFTRFKITLPAIAAAANTAVA*
Ga0105241_116241441	3300009174	Corn Rhizosphere	MDVVARSIYALGGKIGVSTNPGKFTRFKIVLPAAEAASTAVA*
Ga0105238_109853501	3300009551	Corn Rhizosphere	SVYALGGKIGVSTNPGKFTRFKIVLPAAESPSAAVAV*
Ga0126380_109238473	3300010043	Tropical Forest Soil	VARSVYALGGKIGVSTHPGKFTRFKIVLPAAEPVSTAVA*
Ga0126373_106420123	3300010048	Tropical Forest Soil	MDVVARNIYALGGRIGVSTSPGKFTRFKITLPLSPERADTAVA*
Ga0126376_106620693	3300010359	Tropical Forest Soil	YALGGKVGVSTHPGKFTRFRIVLPATEAVSTAVA*
Ga0126376_116193531	3300010359	Tropical Forest Soil	DVVAKSVYAIGGKIGVTTNPGKFTRFKVSLPATEEANTAVA*
Ga0137387_108033871	3300012349	Vadose Zone Soil	GMDVVARSVYALGGKIGVSTNPGKFTRFKIVLPAAESANAAVAV*
Ga0137361_104088824	3300012362	Vadose Zone Soil	GVGMDVVARSVYKLGGKIGVSTNPGKYTRFKILLPAAGAASTAVA*
Ga0137416_103628244	3300012927	Vadose Zone Soil	MDVVARSVYSLGGKIGVSTHPGRFTRFKILLPAVQAVSSAVA*
Ga0137404_106334073	3300012929	Vadose Zone Soil	GVGMDVVARSVYALGGKIGVSTNPGKFTRFKIVLPAAEAANNAAVAV*
Ga0137407_121907721	3300012930	Vadose Zone Soil	YALGGKIGVSTNPGKFTRFKIVLPAAEAANNAAVAV*
Ga0164303_112847421	3300012957	Soil	SVYALGGKIGVSTHPGKRTRFKIVLPAAEAVSTAVA*
Ga0126369_124790631	3300012971	Tropical Forest Soil	VGMDVVARSVYALGGKIGVSTHPGRFTRFKIVLPVSDAVGSTAVA*
Ga0134110_102007053	3300012975	Grasslands Soil	VYALGGRIGVSTHPGRFTRFKILLPAAQAVSSAVA*
Ga0182018_102038384	3300014489	Palsa	SVANLGGKIGVSTHPGKFTRFRVVLPGVDADSAAVA*
Ga0157379_117353091	3300014968	Switchgrass Rhizosphere	RSVYALGGKIGVSTNPGKFTRFKIVLPAAESANAAMAV*
Ga0137411_10565931	3300015052	Vadose Zone Soil	ALGGKIDALGGKIGVSTHPGRFTRFKILLPAAAQAVSTAVA*
Ga0132257_1026345523	3300015373	Arabidopsis Rhizosphere	KSVYAIGGKIGVTTNTGKFTRFKVSLPASSEEASTAVA*
Ga0182037_117379751	3300016404	Soil	MDVVARSVYALGGKIGVSTHPGKFTRFKIVLPAAEPVSTAVA
Ga0187785_106686312	3300017947	Tropical Peatland	VARSVYALGGKIGVSTHPGKFTRFKIVLPATDSVSSTAVA
Ga0187823_101630481	3300017993	Freshwater Sediment	VGMDVIARSVYALGGKIGVSTHPGKYTRFKISLPAGQASSSAVA
Ga0190265_124300311	3300018422	Soil	MDVVARSVYGAGGRIGVATGLGKFTRFKITLPAIAAVANTAVA
Ga0181512_13280431	3300019270	Peatland	RGVGMDVVARSVYALGGKIGVSTNPGKFTRFKIVLPAAEAANSGAAVAAV
Ga0193752_13136272	3300020027	Soil	GVGMDVVAKSVHAIGGKIGVTTNPGKFTRFKVSLPATEEANTAVA
Ga0179592_100125609	3300020199	Vadose Zone Soil	RSVYSLGGKIGVSTHPGRFTRFKILLPAAQAVSSAVA
Ga0210401_109020163	3300020583	Soil	VYALGGKIGVSTHPGKFTRFKIVLPAVDAAGSSAVA
Ga0179596_102005171	3300021086	Vadose Zone Soil	DVVARSVYALGGKIGVSTNPGKFTRFKIVLPAAEAASTAVA
Ga0213876_104187263	3300021384	Plant Roots	VVARSVYALGGKIGVSTNPGKFTRFKIVLPAAEAPSAAVAV
Ga0210385_103217054	3300021402	Soil	VYALGGKIGVSTHPGRFTRFKIVLPAVEAARTAVA
Ga0210390_104533641	3300021474	Soil	VVARSVYALGGKIGVSTHPGRYTRFKISLPAGAASSAVA
Ga0210398_109819093	3300021477	Soil	VGMDVVARSVYALGGKIGVSTNPGKFTRFKIVLPAAESANTAVAV
Ga0126371_110648523	3300021560	Tropical Forest Soil	GVGMDVVARSVYALGGKIGVSTHPGKFTRFKIVLPAAEAVSTAVA
Ga0242664_10205021	3300022527	Soil	RGVGMDVVARSVYALGGKIGVSTNPGKFTRFKIVLPAAEASSSTAVA
Ga0242654_101015963	3300022726	Soil	EVVARSVYALGGKIGVSTHPGRYTRFKISLPAGAASSAVA
Ga0179589_103596933	3300024288	Vadose Zone Soil	YALGGKIGVSTNPGKFTRFKIVLPAAEAANSGAAVAV
Ga0207864_10632721	3300025572	Ionic Liquid And High Solid Enriched	VAKSVYAIGGKIGVTTNPGKFTRFKVSLPASEETSTAVA
Ga0207671_101813294	3300025914	Corn Rhizosphere	RSVYALGGKIGVSTNPGKFTRFKIVLPAAEAASTAVA
Ga0207671_110995181	3300025914	Corn Rhizosphere	GMDVVARSIYALGGKIGVATNPGKFTRFKIALPAVRQETSTAVA
Ga0207664_110631143	3300025929	Agricultural Soil	VGMDVVARSVYALGGKIGVSTNPGKFTRFKIVLPAAEEASTAVA
Ga0207711_104893113	3300025941	Switchgrass Rhizosphere	YALGGKIGVSTNPGKFTRFKIVLPAAEAANSGAAAAAV
Ga0207703_104726371	3300026035	Switchgrass Rhizosphere	VVARSIYALSGKIGVATNPGKFTRFKIALPAVRQETSTAVA
Ga0207702_109102761	3300026078	Corn Rhizosphere	RSVYALGGKIGVSTNPGKFTRFKIVLPAAEEASAVA
Ga0257163_10449543	3300026359	Soil	DVVARSVYALGGKIGVSTHPGRFTRFKILLPAAAQAVSSAVA
Ga0209419_10008941	3300027537	Forest Soil	MDVVARSVYALGGKIGVSTHPGRFTRFKILLPAAQAVSTAVA
Ga0209525_11392222	3300027575	Forest Soil	GVGMDVVARSVYALGGKIGVSTHPGRFTRFKILLPAAQAVSTAVA
Ga0209331_10942003	3300027603	Forest Soil	RSVYALGGKIGVSTNPGKFTRFKIVLPAAEPANAAVAV
Ga0209076_11233151	3300027643	Vadose Zone Soil	ARSVYSLGGKIGVSTHPGRFTRFKILLPAVQAVSSAVA
Ga0209333_11412052	3300027676	Forest Soil	MDVVARSVHALGGKIGVSTHPGKFTRFKIVLPAVEAARTAVA
Ga0209328_101790923	3300027727	Forest Soil	VVARAVYALGGKIGVSTHPGKFTRFKIVLPASDAVTAVA
Ga0209579_100398448	3300027869	Surface Soil	RSVALLGGKIGVTTNPGKFTRFKIALPVSEGADSAVA
Ga0268265_107051921	3300028380	Switchgrass Rhizosphere	KSVYAIGGKIGVTTNPGKFTRFKVSLPATEEANTAVA
Ga0311371_106814431	3300029951	Palsa	VARSVYALGGKIGVSTHPGRFTRFKIVLPAVEAARTAVA
Ga0268253_101449953	3300030514	Agave	GVGMDVVAKSVYAIGGKIGVTTNPGKFTRFKVSLPASEEASTQVA
Ga0311372_116187851	3300030520	Palsa	MDVVARSVYALGGKIGVSTNPGKFTRFKIVLPAAEAASSTAVA
Ga0210278_11365792	3300030596	Soil	RGVGMDVVARSVYALGGKIGVSTHPGRFTRFKILLPPAQAVSTAVA
Ga0265461_132850362	3300030743	Soil	VGMDVVARSVYALGGKIGVSTHPGRFTRFKILLPPAQAVSTAVA
Ga0170834_1098866663	3300031057	Forest Soil	ARSVYALGGKIGVSTHPGRFTRFKIVLPSSDSVSSTAVA
Ga0308181_11750492	3300031099	Soil	VGMDVVAKSVYAIGGKIGVTTNPGKFTRFKVSLPATEEANTAVA
Ga0170822_152845261	3300031122	Forest Soil	RGVGMDVVARSVANLGGKIGVSTHPGKFTRFRVVLPSADESSAAVA
Ga0170824_1019189653	3300031231	Forest Soil	RSVYALGGKIGVSTNPGKFTRFKIVLPAAEAANTGAAVAV
Ga0170824_1262847893	3300031231	Forest Soil	DVVARSVYTLGGKIGVSTNPGKLTRFKIVLPATEEASTAVA
Ga0170818_1124062202	3300031474	Forest Soil	VGMDVVARSVYALGGKIGVSTNPGKFTRFKIVLPAAEAASTAVA
Ga0318538_102056723	3300031546	Soil	SVYALGGKIGVSTHPGKFTRFKIVLPATEAVSTAVA
Ga0318538_102878693	3300031546	Soil	VYALGGKLGVSTHPGKFTRFKIVLPATEAVSTAVA
Ga0307508_105263611	3300031616	Ectomycorrhiza	VVARSVYALGGKIGVSTNPGKFTRFKIVLPAAEAANSGASAAAV
Ga0318560_102248703	3300031682	Soil	RSVYALGGKLGVSTHPGKFTRFKIVLPATEAVSTAVA
Ga0318500_104494481	3300031724	Soil	MDVVARSVYALGGKIGVSTHPGKFTRFKIVLPATEAVSTAVA
Ga0318492_108150622	3300031748	Soil	GMDVVARSISAIGGKIGVSTNPGKFTRFRIALPLTQDADSAVA
Ga0318494_105152951	3300031751	Soil	DLVARSVYALGGKIGVSTHPGKFTRFKIVLPATEAVSTAVA
Ga0307475_110407483	3300031754	Hardwood Forest Soil	VGMDVVARSVYALGGRIGVSTHPGKYTRFKISLPAGQASSSAVA
Ga0318535_101999091	3300031764	Soil	GMDVVARSVYALGGKIGVSTHPGKFTRFKIVLPAAEPVSTAVA
Ga0318554_105682711	3300031765	Soil	MDVVARSVAGLGGKIGVSTHPGKYTRFRVVLPDIDPDSVAVA
Ga0318498_102758383	3300031778	Soil	VGMDVVARSVYALGGKIGVSTHPGKFTRFKIVLPAAEPVSTAVA
Ga0318550_104231773	3300031797	Soil	VHLLGGRIGVSTHPGRYTRFKIVLPADESLSTAVA
Ga0318523_102773223	3300031798	Soil	ARSVYALGGKIGVSTHPGKFTRFKIVLPATDSLNTAVA
Ga0318564_101792911	3300031831	Soil	VYALGGKIGVSTHAGKFTRFKIVLPATEAVSTAVA
Ga0318499_104064792	3300031832	Soil	VYALGGKIGVSTHPGKFTRFKIVLPTSESVSTAVA
Ga0318517_104142222	3300031835	Soil	GMDLVARSVYALGGKIGVSTHPGKFTRFKIVLPATEAVSTAVA
Ga0318522_101100453	3300031894	Soil	VVARSVYALGGKIGVSTHPGKFTRFKIVLPATDESVSTAVA
Ga0306921_101789525	3300031912	Soil	VARSVYALGGRIGVSTHPGRYTRFKIVLPADESLSTAVA
Ga0318530_102400853	3300031959	Soil	VYALGGKIGVSTHPGKFTRFKIVLPATEPASTAVA
Ga0318530_103776811	3300031959	Soil	VGMDVVARSVYALGGKIGVSTHPGKFTRFKIVLPATEAVSTAVA
Ga0318558_104354543	3300032044	Soil	DLVARSVYALGGKIGVSTHPGKFTRFKIVLPAAEPVSTAVA
Ga0318513_103585583	3300032065	Soil	VYALGGRIGVSTHPGRYTRFKIVLPADESLSTAVA
Ga0318525_107036262	3300032089	Soil	VGMDVVARSVYALGGKIGVSTHPGKFTRFKIVLPAAEAVSTAVA
Ga0307415_1011901941	3300032126	Rhizosphere	VVAKSVYAIGGKIGVTTNPGKFTRFKVSLPATEEANTAVA
Ga0307471_1010506283	3300032180	Hardwood Forest Soil	DVVARSVYALGGKIGVSTHPGKFTRFKIVLPSAEAVSTAVA
Ga0306920_1044468942	3300032261	Soil	SVYALGGKIGVSTHPGKFTRFKIVLPATDSLNTAVA
Ga0348332_104080761	3300032515	Plant Litter	RSVANLGGKIVVSTHPGKFTRFRVVLPGADSDSAAVA
Ga0335069_101255805	3300032893	Soil	DVVARSVYALGGKIGVSTHPGKYTRFKILLPGAEPASTAVA
Ga0335069_127099862	3300032893	Soil	SVYALGGKIGVSTHPGKYTRFKISLPGGAAAGNSAVA

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.48
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.48
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F077823

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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