3300002754: Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C43A7_35

Overview

Basic Information

• IMG/M Taxon OID: 3300002754
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0099541 | Gp0056856 | Ga0006237
• Sample Name: Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C43A7_35
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 47873157
• Sequencing Scaffolds: 40
• Novel Protein Genes: 49
• Associated Families: 48

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1
All Organisms → Viruses → Predicted Viral	8
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	2
Not Available	19
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella → unclassified Winogradskyella → Winogradskyella sp. KYW1333	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → intertidal zone → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Monterey Bay, California, USA
• Coordinates
  • Lat. (^o): 36.25
  • Long. (^o): -122.2099
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000711	Metagenome / Metatranscriptome	925	Y
F003058	Metagenome / Metatranscriptome	510	Y
F005796	Metagenome / Metatranscriptome	390	Y
F006719	Metagenome / Metatranscriptome	366	Y
F007417	Metagenome	351	Y
F009300	Metagenome	320	Y
F009369	Metagenome / Metatranscriptome	319	N
F011529	Metagenome / Metatranscriptome	290	Y
F013229	Metagenome / Metatranscriptome	273	N
F014804	Metagenome	260	Y
F015932	Metagenome / Metatranscriptome	251	N
F016996	Metagenome / Metatranscriptome	243	N
F017120	Metagenome / Metatranscriptome	242	Y
F018080	Metagenome	237	Y
F018178	Metagenome / Metatranscriptome	236	Y
F020253	Metagenome / Metatranscriptome	225	Y
F022016	Metagenome / Metatranscriptome	216	Y
F023452	Metagenome / Metatranscriptome	210	N
F024889	Metagenome	204	Y
F027652	Metagenome / Metatranscriptome	194	N
F028322	Metagenome	192	N
F031720	Metagenome	182	N
F032676	Metagenome / Metatranscriptome	179	Y
F033216	Metagenome / Metatranscriptome	178	N
F033593	Metagenome / Metatranscriptome	177	N
F036273	Metagenome / Metatranscriptome	170	Y
F047902	Metagenome / Metatranscriptome	149	N
F051141	Metagenome	144	N
F055857	Metagenome	138	Y
F060599	Metagenome	132	N
F061258	Metagenome	132	Y
F061270	Metagenome / Metatranscriptome	132	N
F062792	Metagenome / Metatranscriptome	130	N
F063662	Metagenome	129	N
F063740	Metagenome / Metatranscriptome	129	N
F069358	Metagenome / Metatranscriptome	124	N
F069997	Metagenome	123	N
F072754	Metagenome	121	Y
F076496	Metagenome / Metatranscriptome	118	N
F076498	Metagenome	118	N
F078711	Metagenome / Metatranscriptome	116	N
F078809	Metagenome / Metatranscriptome	116	N
F080509	Metagenome / Metatranscriptome	115	N
F082468	Metagenome / Metatranscriptome	113	N
F083238	Metagenome / Metatranscriptome	113	Y
F090424	Metagenome / Metatranscriptome	108	N
F091840	Metagenome / Metatranscriptome	107	N
F103355	Metagenome / Metatranscriptome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI24928J39210_1000508	All Organisms → cellular organisms → Archaea	6051
JGI24928J39210_1000659	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	5163
JGI24928J39210_1000776	All Organisms → Viruses → Predicted Viral	4659
JGI24928J39210_1000831	All Organisms → Viruses → Predicted Viral	4449
JGI24928J39210_1001567	All Organisms → Viruses → Predicted Viral	2832
JGI24928J39210_1002184	All Organisms → cellular organisms → Archaea	2193
JGI24928J39210_1002196	All Organisms → Viruses → Predicted Viral	2183
JGI24928J39210_1004377	All Organisms → Viruses → Predicted Viral	1273
JGI24928J39210_1004425	All Organisms → Viruses → Predicted Viral	1264
JGI24928J39210_1004652	All Organisms → Viruses → Predicted Viral	1213
JGI24928J39210_1004788	All Organisms → Viruses → Predicted Viral	1187
JGI24928J39210_1005814	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1027
JGI24928J39210_1006068	Not Available	991
JGI24928J39210_1006984	Not Available	903
JGI24928J39210_1007225	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	881
JGI24928J39210_1007632	Not Available	849
JGI24928J39210_1007637	Not Available	849
JGI24928J39210_1008515	Not Available	794
JGI24928J39210_1009059	Not Available	763
JGI24928J39210_1009087	Not Available	762
JGI24928J39210_1009672	All Organisms → cellular organisms → Bacteria → Proteobacteria	733
JGI24928J39210_1009912	Not Available	721
JGI24928J39210_1010030	Not Available	716
JGI24928J39210_1010812	Not Available	684
JGI24928J39210_1011705	Not Available	652
JGI24928J39210_1012279	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	634
JGI24928J39210_1013107	Not Available	612
JGI24928J39210_1013924	Not Available	591
JGI24928J39210_1014281	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos	581
JGI24928J39210_1014560	Not Available	575
JGI24928J39210_1014982	Not Available	566
JGI24928J39210_1015246	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium	561
JGI24928J39210_1015780	Not Available	550
JGI24928J39210_1016071	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	544
JGI24928J39210_1016553	All Organisms → cellular organisms → Bacteria → Proteobacteria	535
JGI24928J39210_1016632	All Organisms → cellular organisms → Bacteria → Proteobacteria	534
JGI24928J39210_1016690	Not Available	533
JGI24928J39210_1017771	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella → unclassified Winogradskyella → Winogradskyella sp. KYW1333	515
JGI24928J39210_1018064	Not Available	511
JGI24928J39210_1018701	Not Available	501

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI24928J39210_1000508	JGI24928J39210_10005089	F060599	MIMEWDVIISKSIEDQNEDLGIFNWNFKSSNAHLGLNTLVSEKVKDREWALRVNSSLLHGIEDSSEVWAQEIFLIPKKNEXKSYSGKTKVFCSKSLQTIGDQIGLIELVNDEIKEGIWGIKHNPLCFNTHNREPCWHIRLYKISNVEEE*
JGI24928J39210_1000659	JGI24928J39210_10006594	F072754	MKDTIELVTWKGVVKKYGYKEGENKGTRFGLQLTLDGMNDTQFIWCETSLERKKLFKTIIRIAKNEGRDLXIIE*
JGI24928J39210_1000776	JGI24928J39210_10007763	F090424	MIKVTTEGRNLPEFDTFINECIVALFPDGVNYDINIRYAKFIEDTGLYGGLCTGDQDSSTIDIATHWKYEXGEIIKYEPHEMAGTLAHELTHAKQFCKSQINMVDHVWKHNGVHTDCADLEYMDHPWEVEAYEYEKILVDLLWENV*
JGI24928J39210_1000831	JGI24928J39210_10008311	F024889	MNSATIGALMIVGVVILYIFALSYVEGKIARQENEKLKKNIDKLNDKA*
JGI24928J39210_1000831	JGI24928J39210_100083110	F014804	MTDDWIDNILDGEPSGITDTQWLIIESNIDLTSFTETMKSDILGRINDLTELEAEEIITKIYENRYEKDTRKQWEKMCKDGVFGHRDF*
JGI24928J39210_1000831	JGI24928J39210_10008315	F009300	MIKWKKTTYPSTFIKLSDELAKVRSMLSADVYNKNTEKYRGKQEHSISQLGIFAELIARHLMENNKGIRYKAAPLLEQRPVVEADLIMEGIGELNYIDVKGVKSGGNTLRVNFKAHNNPKKKITHYLFIQPLNALYARFCWFTHEQVSEWTVVMSTYTECYELEIPKNN*
JGI24928J39210_1001567	JGI24928J39210_10015676	F078809	MKKLLLSILGLLLLTSVTIAEESEIKKYNFYWDEVPVVCGAPEEIDRWANDKGFTPLSLSYGKEGGDPDGVVVYIVVYYLNKSNGETFATVTTPTGKDVCVIFRTFNLQLNPEIMEQYAPGL
JGI24928J39210_1002184	JGI24928J39210_10021842	F078711	MSSGNNVQYLGILEGAXLIFVCIFTSRTCISFTQRLSRGISIICLIGILYFASFWLLLISSELLHDHIEWFSFFEPDRVVILYSFTWLLPQTAKSLLIFFMGYREDDDSFEHSMTRILNSLNEERKYFNQLRKELNMGGGQLRRNLDXLISRGQIFKQTIGKXHYFSLTSPSSSPLD*
JGI24928J39210_1002196	JGI24928J39210_10021963	F082468	MSKGDKDRTTDKKAFDENYERIFGKNQKVTHTELNWXGDLQNLIFAKDQKVKQLQVTDLNWXGDLGLEGDTRNPEDYYKNIEVVTLPKKHLISRMMEKLNKKYPGTLKSLKDKS*
JGI24928J39210_1002196	JGI24928J39210_10021964	F091840	MTLVFWVILAAGTXGAVDGTIKMNNICKKEVEEGVSKDMKECKQYYFDTRIKKGW*
JGI24928J39210_1004377	JGI24928J39210_10043775	F061270	MGNRATIEVVGDKLAGDKAPCYIYVHWSGSPDTVKQFVNNAAPVMRKTDVNYSTARLITEICNYVEGGLSVGVYPATENNKEAWDNGHYVVDISNGNIKNDDKLVADGIKFGEF*
JGI24928J39210_1004425	JGI24928J39210_10044254	F024889	MMNSATIGALMIVGVVILYIFALCYVEDKIARQENEKLKKNIDKLNDKA*
JGI24928J39210_1004652	JGI24928J39210_10046522	F000711	METINEPTHPTDYRLVKLMDGSLLIGTISVDDNHMRIANPLEMVTTPRMTXHGLKEDTTLCRWIPFTQDKEFYILKDKVLVISVATVELAHYYEVVLEKIDKTDAKLALRPGLTPEDIDRILDIAEEMDSEFVGEDDDYNFDTFETPKTVH*
JGI24928J39210_1004788	JGI24928J39210_10047883	F018080	MECLDIEIFNHFLKTYTYIIWNKKHLLGEIVEDDMMKMLDKQQLIDFYHVGKTKFKVEKSKIEKHIKRNDK*
JGI24928J39210_1005814	JGI24928J39210_10058142	F083238	MAGTLAHELTHAKQFCKSQINMVDHVWKHNGVHTDCADLEYMDHPWEVEAYEYEKILVDLLWENV*
JGI24928J39210_1005814	JGI24928J39210_10058144	F062792	MTPQEIDDYKRVWRMGSYFQHHTHSDLRNDCREWCKENCETHQWDMKIFTDIYGDTIRFELESHFV
JGI24928J39210_1006068	JGI24928J39210_10060683	F033216	LVNANDLTGGTNKSLVSLIECYYIIESIGSTEGKLTISAAVDAEYDEQAEAAGTQVRKDLVLTGNGKYGLRPSQLKFGNDKIFKLTTDSNVRNYLLVTEFRRESNG*
JGI24928J39210_1006984	JGI24928J39210_10069842	F006719	MSNVNYTPEMVKILEQNAPVDYAKAQDLAVQLDRGVRSIIAKCKREGIEYISKPAPAKKKAAATKVELVGAIAKALDCDADSLSGLEKSTGIALSNLLSNIS*
JGI24928J39210_1007225	JGI24928J39210_10072252	F080509	MKKQPIWKIILVIIIAVLLIKFLKNYTDKVTEETAQRTVERIMKIKTKIPVEKDTIPLIPLVPAKKIDSL*
JGI24928J39210_1007632	JGI24928J39210_10076322	F016996	GMHKLRSGRDIPSTPQVDKIHKKVVAMTDRNDHSGARIEIAKACGDKQLVQIFSTLELIHDKYSGAVGNQSIELRGKMMNPLNKAIERKFGKYADVIQDAL*
JGI24928J39210_1007637	JGI24928J39210_10076371	F063662	MEVILNIIGGGQISLPKREIRGYYKDFLTGETKVQVGESEHKVRESLTEIAYLMGVVQ*ILI*INVNL
JGI24928J39210_1007637	JGI24928J39210_10076373	F007417	MTRYTLQVKLPSLGWVVAIKTRDLFYMARKRARLIKQGHEVKLTKKKGK*
JGI24928J39210_1008515	JGI24928J39210_10085152	F036273	EKLETIKESYFPKTKIEEATSNDEVDSVAANIPADAGTSDAMAAYTAAITKNLTSLK*
JGI24928J39210_1009059	JGI24928J39210_10090591	F023452	VAWASGISVKQVNPAIIPIAPTKPLIKNNLVLFILIAAKPIDFIIGSMTIKAKRFLKKTTSRICKLSDAFLIKITMIEKRMIDEIFKMIALV*
JGI24928J39210_1009087	JGI24928J39210_10090871	F033593	PVIIQDNLIYESATSADQIELENEVGNLVVNXRXEGYTVRDVEVRNGFAYGGPRVKNLSDRAFTTFSANNAITLEGGAGDGEIILENESGVLQHPQSDSWSTTIADWNTLRFTGTLNSNVDGETMRLSDINGTKSSQNHRINFAFPTEVTKSA*
JGI24928J39210_1009672	JGI24928J39210_10096722	F032676	VNKFLIAAAAALFSANSFAAIALSGEYTGTLNDSGVYTQDLATTLVGSSAAGAVTVTLDETMAVDDLYVESTLAGVKFKLGDWSGTDADFSKLNASTTVGPATVGVTQVSGGATTFDAGMTLAGVKVDVTNI
JGI24928J39210_1009824	JGI24928J39210_10098241	F069997	MNYPLDFKLGKGDREFADANNKGLVVNYSDAAIKLCHWYKDDAKEHSGFTYVYI
JGI24928J39210_1009840	JGI24928J39210_10098402	F031720	NFSGLPVMSLCLDHHEQRLKASASKNPQFTLIIDSNTTWNLLKEQTIPSDKIEGDSELALMFLIILAESNIDLELLIYNNFGTVPGLIIRKILSQDFLNDNQGAENIRVRSLQASLRNISIRMDRMEQKQAL*
JGI24928J39210_1009912	JGI24928J39210_10099121	F018178	MEDKLDRILERLSQRINEWEGASVEAIEAETTFKSFEAAMQKAHMDAGSSAAKAQTETRSSPDWAGYYKVVQLANLKAEKFKKQIMLGQLAFDAERTKQANLRRVV*
JGI24928J39210_1010030	JGI24928J39210_10100301	F051141	LRYTSIYKSKISAKRVILLTIARFTKVRKRIMQIKKRKMAIIYSYPTLVPQLGDKVLGSNIVDSAGQPVLGNPTVQYTLNDIKLLVDQNYVQQIESSSAVASQASVVNQPYSXQFGAEAGTSVXNVQLLKTSGSDAGGNKIQFNTAGTYEVTLTYSVGVSQGTNIPYLIFRTLKDGAAQEGPTVVVNKAFTAVYNPIPLIIPVTIHVTEPCYYNFQMM
JGI24928J39210_1010812	JGI24928J39210_10108121	F061258	VKNVVAISLAIFLVPLAGCLDELTEPTKTELTDKEVILPDGDYYRLGPAVGYEQFEWNFTHIPTEGESSNFSWNVFFMNATNFQLFEDGNLTAEYFVNGSWISMDGNVTKGPFSVDSSDGYYLVVENSRGNENGDTLRFRIQFYGWK*
JGI24928J39210_1011705	JGI24928J39210_10117051	F069358	MEDHKIRALKDHYKAQITWAASELTSYLEYPSAVGEHTFLETMDKLVQQIAENEDKMVVLETHFNE*
JGI24928J39210_1012279	JGI24928J39210_10122793	F055857	HENEHMNGYVFTDLVSKLKLERAEKSKQKMIKEIKRRQGAPKIIK*
JGI24928J39210_1013107	JGI24928J39210_10131072	F017120	MSLNTFVNNTAMWEAFISELDERISTQQRSMETVTDTAELYRHQGAIRALRQLQYLRDKVNG*
JGI24928J39210_1013924	JGI24928J39210_10139241	F028322	MKLLDFWGSFQANEKRMIKILLFLLPLIVIFIYLGDISNKISAKKLNLETAKANFDYVYGKALNFQKYSLAQKALFDYPEKKDFIFSESKRYPLIDFQSGEEEGIMFIAFKSESVVNYAQFLESLVNHPEIEIISLSITPNSEFQQVKAFLQ*
JGI24928J39210_1014281	JGI24928J39210_10142811	F027652	FGQRLEKVPKEFHKYMVEQQRFIRLRQSAEAILKRKKPLLXEMVSKVHDHERKNMDVYVLHDSTLPRDLVIIFRHDKSGEYNNVSSPEIDRLRQKIQHCKEEIIKLQEQIYPRGTEDGLSPEEKYDRIHPKGYYKNEAATRRPTKEEHDINTTEFSVWDKPDTRTPFQKGDEPVLSDLKKAGVYVYPFSNCPV
JGI24928J39210_1014560	JGI24928J39210_10145601	F022016	MAFDMFKLHKLSDHLESEAYEHAQWAIKDFYNLTIEKNEYGYDQDVYEVLTKEQIEEIDHYISENTGDVPWHEPYTLSVLNRI
JGI24928J39210_1014982	JGI24928J39210_10149822	F013229	MNFEELSREFEKLWVDLCAEGENDPLACAGIMMAQAMRIYKSMLTENEFNMMVETILKSRPXITTIEKPTIN*
JGI24928J39210_1014982	JGI24928J39210_10149823	F076498	MYKQISENEFNKLLDSYEQGGTYQKKKSSFTYNDWLIKYKGKT
JGI24928J39210_1015246	JGI24928J39210_10152462	F103355	MLCVASILWSGVLLNFAILTVKAGLILAKLNEGNKLAIKRQRNWEKII*
JGI24928J39210_1015780	JGI24928J39210_10157802	F011529	MWIKESKRKTIDTLEGIRLRSARLWLDKDGFHPFLDQDTLIKPDLQKSMGCKYNELPKEAWDTMDRYDESIAKRSKYAT*
JGI24928J39210_1016071	JGI24928J39210_10160713	F005796	LEYAIFVFVVIGCGLTCHALGKQEGIETTIEHLVDNGMLELDEE*
JGI24928J39210_1016553	JGI24928J39210_10165531	F076496	MASIKRSKEVQDFIDANPDKFRVVSPEETAKTLEKQSGGYFKGQSVMGPSKKKGKSS*IIIGKKS
JGI24928J39210_1016632	JGI24928J39210_10166322	F003058	MTESEMNKLADLVVSKIINRQKAYDEEFKAEIQGMVDDNENLEFGTITEDEIIADELIKLKNRLDQLEENEDYEAARIVANKIKHLKNKYNL*
JGI24928J39210_1016690	JGI24928J39210_10166901	F015932	MMKKDEKNMKLNTPDILWKLDNLADQVCLDNDNIVRWCIDQNDHDDVPDRTARGILQKHGLKVSDLKTLDNDGVLVHRLGDDIPGGMVDDRCLHISTHLVPVLRVLPNILDKVW*
JGI24928J39210_1017771	JGI24928J39210_10177711	F063740	MKKLAFTFVLLLSFACSKDDNSTPNNLVDPIIGSWQSSFALTDENEAGQVVDISANGIIIFNADGTGSRNLLVTNDGGEPQESNETFEWENLSSALNSSETTQNYAINGEAFTAVFT
JGI24928J39210_1018064	JGI24928J39210_10180642	F047902	VIICFGPQNWYTYDEQYRNFMTLKNCLAPSGLLLWSHVHNYYKVFQPDHPHGHTWIHGDLEHAQKNSAFYFYDRNWKYTWYFNWTEHAVNTLAGHVGLKINKVDYDHCNLYRPPMYRIFTEMTHG*
JGI24928J39210_1018701	JGI24928J39210_10187011	F020253	MGKRXIPGIITKKGQPKVKKNMSHSTFTAKRHPNSKRVRNA*
JGI24928J39210_1018701	JGI24928J39210_10187012	F009369	MAKGPIQFHNLPTGDQMVYFDWMNALIEDGQIDPSIDNNDYIDKMERMHKCDVNQTEPIWPFFDGNNYFDPXEEEXI*