Metagenome Family F055857

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F055857
Family Type	Metagenome
Number of Sequences	138
Average Sequence Length	44 residues
Representative Sequence	HENEHMNGYVFTDLVSKLKLERAEKSKQKMIKEIQKRQNTPRIIT
Number of Associated Samples	116
Number of Associated Scaffolds	138

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.72 %
% of genes near scaffold ends (potentially truncated)	99.28 %
% of genes from short scaffolds (< 2000 bps)	94.93 %
Associated GOLD sequencing projects	103
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.49

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (44.928 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (42.754 % of family members)
Environment Ontology (ENVO)	Unclassified (89.130 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (84.783 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 52.05% β-sheet: 0.00% Coil/Unstructured: 47.95%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.49
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.49
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 138 Family Scaffolds
PF05118	Asp_Arg_Hydrox	22.46
PF02540	NAD_synthase	5.80
PF00011	HSP20	0.72
PF04545	Sigma70_r4	0.72
PF00389	2-Hacid_dh	0.72
PF13640	2OG-FeII_Oxy_3	0.72

COG ID	Name	Functional Category	% Frequency in 138 Family Scaffolds
COG3555	Aspartyl/asparaginyl beta-hydroxylase, cupin superfamily	Posttranslational modification, protein turnover, chaperones [O]	22.46
COG0171	NH3-dependent NAD+ synthetase	Coenzyme transport and metabolism [H]	5.80
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	0.72

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	55.07 %
Unclassified	root	N/A	44.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.93 %
cellular organisms	root	All Organisms → cellular organisms	33.33 %
Viruses	superkingdom	All Organisms → Viruses	21.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.93 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	33.33 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	21.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.93 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	28.99 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	21.74 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.45 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.93 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	23.19 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	21.74 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2.90 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	1.45 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	21.74 %
Rickettsiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales	20.29 %
Pelagibacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales	2.90 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2.90 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1.45 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	21.74 %
unclassified Rickettsiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales	20.29 %
Pelagibacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae	2.90 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2.90 %
Oscillatoriophycideae	subclass	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae	1.45 %
Betaproteobacteria bacterium TMED156	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED156	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	21.74 %
Rickettsiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	20.29 %
Candidatus Pelagibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	2.90 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2.90 %
Oscillatoriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales	1.45 %
Betaproteobacteria bacterium TMED156	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED156	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	21.74 %
Rickettsiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	20.29 %
unclassified Candidatus Pelagibacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter	2.90 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2.90 %
Oscillatoriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales	1.45 %
Betaproteobacteria bacterium TMED156	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED156	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	21.74 %
Rickettsiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	20.29 %
Candidatus Pelagibacter sp. TMED239	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED239	2.90 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2.90 %
Oscillatoriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales	1.45 %
Betaproteobacteria bacterium TMED156	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED156	0.72 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000115\|DelMOSum2011_c10093184	Not Available	1009	Open in IMG/M
3300000188\|SI60aug11_150mDRAFT_c1007263	All Organisms → Viruses → Predicted Viral	1922	Open in IMG/M
3300000225\|SI34jun09_120mDRAFT_1038618	All Organisms → Viruses → Predicted Viral	1029	Open in IMG/M
3300000928\|OpTDRAFT_10109423	All Organisms → Viruses → Predicted Viral	1068	Open in IMG/M
3300001347\|JGI20156J14371_10145184	All Organisms → cellular organisms → Bacteria	671	Open in IMG/M
3300001450\|JGI24006J15134_10060465	All Organisms → Viruses → Predicted Viral	1500	Open in IMG/M
3300001450\|JGI24006J15134_10153857	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	750	Open in IMG/M
3300001589\|JGI24005J15628_10061999	All Organisms → Viruses → Predicted Viral	1390	Open in IMG/M
3300001589\|JGI24005J15628_10196069	Not Available	570	Open in IMG/M
3300002754\|JGI24928J39210_1012279	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	634	Open in IMG/M
3300003588\|JGI26247J51722_1066706	All Organisms → cellular organisms → Bacteria	673	Open in IMG/M
3300003620\|JGI26273J51734_10032380	All Organisms → Viruses → Predicted Viral	1839	Open in IMG/M
3300004097\|Ga0055584_100843038	All Organisms → cellular organisms → Bacteria	959	Open in IMG/M
3300005838\|Ga0008649_10230755	Not Available	710	Open in IMG/M
3300005969\|Ga0066369_10213987	Not Available	628	Open in IMG/M
3300006091\|Ga0082018_1101437	Not Available	512	Open in IMG/M
3300006191\|Ga0075447_10054520	All Organisms → Viruses → Predicted Viral	1465	Open in IMG/M
3300006736\|Ga0098033_1198796	Not Available	555	Open in IMG/M
3300006752\|Ga0098048_1007609	All Organisms → Viruses → Predicted Viral	4002	Open in IMG/M
3300006900\|Ga0066376_10533906	Not Available	659	Open in IMG/M
3300006921\|Ga0098060_1025562	Not Available	1817	Open in IMG/M
3300006924\|Ga0098051_1059060	All Organisms → Viruses → Predicted Viral	1052	Open in IMG/M
3300006926\|Ga0098057_1077659	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	809	Open in IMG/M
3300006927\|Ga0098034_1121443	Not Available	743	Open in IMG/M
3300006947\|Ga0075444_10311253	Not Available	606	Open in IMG/M
3300007963\|Ga0110931_1128241	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	763	Open in IMG/M
3300007992\|Ga0105748_10078724	All Organisms → Viruses → Predicted Viral	1301	Open in IMG/M
3300008050\|Ga0098052_1343442	Not Available	560	Open in IMG/M
3300008999\|Ga0102816_1150533	Not Available	721	Open in IMG/M
3300009058\|Ga0102854_1091035	Not Available	873	Open in IMG/M
3300009086\|Ga0102812_10793440	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales	525	Open in IMG/M
3300009103\|Ga0117901_1008963	Not Available	9201	Open in IMG/M
3300009172\|Ga0114995_10321540	Not Available	851	Open in IMG/M
3300009173\|Ga0114996_10648878	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	779	Open in IMG/M
3300009173\|Ga0114996_10790136	Not Available	688	Open in IMG/M
3300009409\|Ga0114993_10846433	Not Available	658	Open in IMG/M
3300009420\|Ga0114994_10647322	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	691	Open in IMG/M
3300009434\|Ga0115562_1215888	Not Available	680	Open in IMG/M
3300009441\|Ga0115007_10862964	Not Available	616	Open in IMG/M
3300009445\|Ga0115553_1264959	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	669	Open in IMG/M
3300009496\|Ga0115570_10132020	All Organisms → Viruses → Predicted Viral	1186	Open in IMG/M
3300009512\|Ga0115003_10168350	All Organisms → Viruses → Predicted Viral	1326	Open in IMG/M
3300009526\|Ga0115004_10088494	All Organisms → Viruses → Predicted Viral	1914	Open in IMG/M
3300009526\|Ga0115004_10455488	Not Available	757	Open in IMG/M
3300009544\|Ga0115006_10105560	Not Available	2497	Open in IMG/M
3300009706\|Ga0115002_10791276	Not Available	663	Open in IMG/M
3300009706\|Ga0115002_10807047	Not Available	655	Open in IMG/M
3300009785\|Ga0115001_10040326	All Organisms → Viruses → Predicted Viral	3076	Open in IMG/M
3300009785\|Ga0115001_10284603	Not Available	1051	Open in IMG/M
3300009786\|Ga0114999_10505488	Not Available	932	Open in IMG/M
3300009786\|Ga0114999_10606439	Not Available	830	Open in IMG/M
3300010151\|Ga0098061_1075689	Not Available	1277	Open in IMG/M
3300010155\|Ga0098047_10170710	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	838	Open in IMG/M
3300014818\|Ga0134300_1022621	All Organisms → Viruses → Predicted Viral	1408	Open in IMG/M
3300017702\|Ga0181374_1064938	Not Available	615	Open in IMG/M
3300017713\|Ga0181391_1064090	Not Available	852	Open in IMG/M
3300017717\|Ga0181404_1063112	Not Available	924	Open in IMG/M
3300017721\|Ga0181373_1050183	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	759	Open in IMG/M
3300017750\|Ga0181405_1179065	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	517	Open in IMG/M
3300017758\|Ga0181409_1063633	All Organisms → Viruses → Predicted Viral	1124	Open in IMG/M
3300017759\|Ga0181414_1116054	Not Available	703	Open in IMG/M
3300017773\|Ga0181386_1191385	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	617	Open in IMG/M
3300020165\|Ga0206125_10093839	All Organisms → Viruses → Predicted Viral	1288	Open in IMG/M
3300020253\|Ga0211685_1035653	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	718	Open in IMG/M
3300020335\|Ga0211690_1074723	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	745	Open in IMG/M
3300020335\|Ga0211690_1096304	Not Available	638	Open in IMG/M
3300020372\|Ga0211683_10037932	All Organisms → Viruses → Predicted Viral	1608	Open in IMG/M
3300020372\|Ga0211683_10125805	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	827	Open in IMG/M
3300020382\|Ga0211686_10210882	Not Available	801	Open in IMG/M
3300020382\|Ga0211686_10445477	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	519	Open in IMG/M
3300020389\|Ga0211680_10351481	Not Available	538	Open in IMG/M
3300020396\|Ga0211687_10426629	Not Available	506	Open in IMG/M
3300020399\|Ga0211623_10191627	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	719	Open in IMG/M
3300020415\|Ga0211553_10160364	Not Available	921	Open in IMG/M
3300020431\|Ga0211554_10176039	All Organisms → Viruses → Predicted Viral	1042	Open in IMG/M
3300020447\|Ga0211691_10066268	All Organisms → Viruses → Predicted Viral	1299	Open in IMG/M
3300020469\|Ga0211577_10399318	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED239	850	Open in IMG/M
3300020595\|Ga0206126_10395004	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	610	Open in IMG/M
3300021185\|Ga0206682_10312046	Not Available	682	Open in IMG/M
3300021185\|Ga0206682_10324991	All Organisms → cellular organisms → Bacteria	665	Open in IMG/M
3300021185\|Ga0206682_10374400	Not Available	607	Open in IMG/M
3300024231\|Ga0233399_1096310	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	688	Open in IMG/M
(restricted) 3300024324\|Ga0233443_1318364	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales	511	Open in IMG/M
3300024359\|Ga0228628_1029093	All Organisms → Viruses → Predicted Viral	1294	Open in IMG/M
3300025097\|Ga0208010_1059023	Not Available	839	Open in IMG/M
3300025108\|Ga0208793_1198867	Not Available	503	Open in IMG/M
3300025110\|Ga0208158_1097939	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	690	Open in IMG/M
3300025128\|Ga0208919_1102563	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	920	Open in IMG/M
3300025138\|Ga0209634_1060198	All Organisms → Viruses → Predicted Viral	1830	Open in IMG/M
3300025138\|Ga0209634_1101119	All Organisms → Viruses → Predicted Viral	1275	Open in IMG/M
3300025138\|Ga0209634_1155070	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	929	Open in IMG/M
3300025138\|Ga0209634_1264155	Not Available	614	Open in IMG/M
3300025168\|Ga0209337_1257845	Not Available	662	Open in IMG/M
3300025645\|Ga0208643_1013828	All Organisms → Viruses → Predicted Viral	2988	Open in IMG/M
3300025690\|Ga0209505_1130172	Not Available	686	Open in IMG/M
3300025694\|Ga0209406_1150158	Not Available	739	Open in IMG/M
3300025869\|Ga0209308_10217679	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	837	Open in IMG/M
3300025890\|Ga0209631_10326959	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	732	Open in IMG/M
3300026209\|Ga0207989_1068755	Not Available	938	Open in IMG/M
3300027522\|Ga0209384_1083855	All Organisms → cellular organisms → Bacteria → Proteobacteria	785	Open in IMG/M
3300027522\|Ga0209384_1153609	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	502	Open in IMG/M
3300027553\|Ga0208947_1139051	All Organisms → cellular organisms → Bacteria → Proteobacteria	528	Open in IMG/M
3300027685\|Ga0209554_1153480	Not Available	704	Open in IMG/M
3300027687\|Ga0209710_1230894	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED156	611	Open in IMG/M
3300027780\|Ga0209502_10037030	All Organisms → Viruses → Predicted Viral	2783	Open in IMG/M
3300027780\|Ga0209502_10271526	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	743	Open in IMG/M
3300027788\|Ga0209711_10199204	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	924	Open in IMG/M
3300027788\|Ga0209711_10299341	Not Available	696	Open in IMG/M
3300027788\|Ga0209711_10408093	Not Available	555	Open in IMG/M
3300027810\|Ga0209302_10113766	All Organisms → Viruses → Predicted Viral	1351	Open in IMG/M
3300027813\|Ga0209090_10226210	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED239	955	Open in IMG/M
3300027833\|Ga0209092_10290271	Not Available	888	Open in IMG/M
3300027838\|Ga0209089_10620602	Not Available	566	Open in IMG/M
3300027839\|Ga0209403_10556283	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	567	Open in IMG/M
3300027847\|Ga0209402_10174844	All Organisms → Viruses → Predicted Viral	1419	Open in IMG/M
3300028177\|Ga0257122_1142728	Not Available	634	Open in IMG/M
3300028190\|Ga0257108_1037433	All Organisms → Viruses → Predicted Viral	1463	Open in IMG/M
3300028197\|Ga0257110_1079505	All Organisms → Viruses → Predicted Viral	1396	Open in IMG/M
3300028489\|Ga0257112_10030279	All Organisms → Viruses → Predicted Viral	2028	Open in IMG/M
3300031175\|Ga0308020_1198830	Not Available	603	Open in IMG/M
3300031519\|Ga0307488_10818746	Not Available	513	Open in IMG/M
3300031569\|Ga0307489_10463193	Not Available	856	Open in IMG/M
3300031598\|Ga0308019_10346737	Not Available	543	Open in IMG/M
3300031599\|Ga0308007_10247974	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	605	Open in IMG/M
3300031621\|Ga0302114_10396372	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED239	517	Open in IMG/M
3300031628\|Ga0308014_1131846	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	571	Open in IMG/M
3300031628\|Ga0308014_1151993	Not Available	525	Open in IMG/M
3300031644\|Ga0308001_10160675	Not Available	913	Open in IMG/M
3300031656\|Ga0308005_10080457	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED239	848	Open in IMG/M
3300031695\|Ga0308016_10190798	All Organisms → cellular organisms → Bacteria → Proteobacteria	791	Open in IMG/M
3300031695\|Ga0308016_10202834	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	761	Open in IMG/M
3300031721\|Ga0308013_10236208	Not Available	661	Open in IMG/M
3300031721\|Ga0308013_10254369	Not Available	630	Open in IMG/M
3300031766\|Ga0315322_10815877	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	575	Open in IMG/M
3300031861\|Ga0315319_10406859	Not Available	683	Open in IMG/M
3300032088\|Ga0315321_10205526	Not Available	1292	Open in IMG/M
3300032130\|Ga0315333_10182598	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	993	Open in IMG/M
3300034695\|Ga0372840_068033	Not Available	1053	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Habitat	Taxonomy	Distribution
Oceanic	Environmental → Aquatic → Marine → Oceanic	45.65%
Unclassified	Environmental → Aquatic → Marine → Unclassified	21.01%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	12.32%
Coastal	Environmental → Aquatic → Marine → Coastal	5.80%
Pelagic	Environmental → Aquatic → Marine → Pelagic	5.80%
Strait	Environmental → Aquatic → Marine → Strait	4.35%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	3.62%
Inlet	Environmental → Aquatic → Marine → Inlet	1.45%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	45.65%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	21.01%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	10.14%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	5.80%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	5.80%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	4.35%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	3.62%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	2.17%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	1.45%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	42.75%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	13.04%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	7.97%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	5.07%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	5.07%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	4.35%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	4.35%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	2.17%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	2.17%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	2.17%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	1.45%
Sackhole Brine	Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine	1.45%
Seawater	Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater	1.45%
Seawater	Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater	0.72%
Marine	Environmental → Aquatic → Marine → Inlet → Unclassified → Marine	0.72%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	0.72%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	0.72%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	0.72%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	0.72%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	0.72%
Freshwater And Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine	0.72%
Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine	0.72%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000115	Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011	Environmental	Open in IMG/M
3300000188	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 60 08/10/11 150m	Environmental	Open in IMG/M
3300000225	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 34 06/16/09 120m	Environmental	Open in IMG/M
3300000928	Marine plume microbial communities from the Columbia River - 25 PSU	Environmental	Open in IMG/M
3300001347	Pelagic Microbial community sample from North Sea - COGITO 998_met_06	Environmental	Open in IMG/M
3300001450	Marine viral communities from the Pacific Ocean - LP-53	Environmental	Open in IMG/M
3300001589	Marine viral communities from the Pacific Ocean - LP-40	Environmental	Open in IMG/M
3300002754	Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C43A7_35	Environmental	Open in IMG/M
3300003588	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_100m_DNA	Environmental	Open in IMG/M
3300003620	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_125m_DNA	Environmental	Open in IMG/M
3300004097	Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaG	Environmental	Open in IMG/M
3300005838	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S2LV_130m_DNA	Environmental	Open in IMG/M
3300005969	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_Bottom_ad_4513_LV_A	Environmental	Open in IMG/M
3300006091	Marine microbial communities from the Eastern Tropical South Pacific Oxygen Minumum Zone, cruise NBP1315, 2013 - sample NBP125	Environmental	Open in IMG/M
3300006191	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG104-DNA	Environmental	Open in IMG/M
3300006736	Marine viral communities from the Subarctic Pacific Ocean - 1_ETSP_OMZ_AT15124 metaG	Environmental	Open in IMG/M
3300006752	Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG	Environmental	Open in IMG/M
3300006900	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_Bottom_ad_5009_LV_A	Environmental	Open in IMG/M
3300006921	Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG	Environmental	Open in IMG/M
3300006924	Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG	Environmental	Open in IMG/M
3300006926	Marine viral communities from the Subarctic Pacific Ocean - 18_ETSP_OMZAT15316 metaG	Environmental	Open in IMG/M
3300006927	Marine viral communities from the Subarctic Pacific Ocean - 2_ETSP_OMZ_AT15125 metaG	Environmental	Open in IMG/M
3300006947	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG017-DNA	Environmental	Open in IMG/M
3300007963	Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (version 2)	Environmental	Open in IMG/M
3300007992	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1461AB_0.2um	Environmental	Open in IMG/M
3300008050	Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG	Environmental	Open in IMG/M
3300008999	Estuarine microbial communities from the Columbia River estuary - Flood tide non-ETM metaG S.545	Environmental	Open in IMG/M
3300009058	Estuarine microbial communities from the Columbia River estuary - metaG 1370A-02	Environmental	Open in IMG/M
3300009086	Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.713	Environmental	Open in IMG/M
3300009103	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 250-2.7um	Environmental	Open in IMG/M
3300009172	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154	Environmental	Open in IMG/M
3300009173	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134	Environmental	Open in IMG/M
3300009409	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150	Environmental	Open in IMG/M
3300009420	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152	Environmental	Open in IMG/M
3300009434	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110516	Environmental	Open in IMG/M
3300009441	Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean ARC135M Metagenome	Environmental	Open in IMG/M
3300009445	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110331	Environmental	Open in IMG/M
3300009496	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120524	Environmental	Open in IMG/M
3300009512	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88	Environmental	Open in IMG/M
3300009526	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_90	Environmental	Open in IMG/M
3300009544	Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean- Svalbard ARC20M Metagenome	Environmental	Open in IMG/M
3300009706	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_86	Environmental	Open in IMG/M
3300009785	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_130	Environmental	Open in IMG/M
3300009786	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126	Environmental	Open in IMG/M
3300010151	Marine viral communities from the Subarctic Pacific Ocean - 22_ETSP_OMZ_AT15343 metaG	Environmental	Open in IMG/M
3300010155	Marine viral communities from the Subarctic Pacific Ocean - 12_ETSP_OMZ_AT15267 metaG	Environmental	Open in IMG/M
3300014818	Marine microbial communities to study oil droplet degradation from Trondheimsfjord, Norway - 0152 : 8 days incubation	Environmental	Open in IMG/M
3300017702	Marine viral communities from the Subarctic Pacific Ocean - Lowphox_10 viral metaG	Environmental	Open in IMG/M
3300017713	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11	Environmental	Open in IMG/M
3300017717	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 27 SPOT_SRF_2011-10-25	Environmental	Open in IMG/M
3300017721	Marine viral communities from the Subarctic Pacific Ocean - Lowphox_09 viral metaG	Environmental	Open in IMG/M
3300017750	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 28 SPOT_SRF_2011-11-29	Environmental	Open in IMG/M
3300017758	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 32 SPOT_SRF_2012-05-30	Environmental	Open in IMG/M
3300017759	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 37 SPOT_SRF_2012-11-28	Environmental	Open in IMG/M
3300017773	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 9 SPOT_SRF_2010-03-24	Environmental	Open in IMG/M
3300020165	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1	Environmental	Open in IMG/M
3300020253	Marine microbial communities from Tara Oceans - TARA_B100000780 (ERX555982-ERR598945)	Environmental	Open in IMG/M
3300020335	Marine microbial communities from Tara Oceans - TARA_B100000768 (ERX556030-ERR599035)	Environmental	Open in IMG/M
3300020372	Marine microbial communities from Tara Oceans - TARA_B100000787 (ERX556133-ERR599090)	Environmental	Open in IMG/M
3300020382	Marine microbial communities from Tara Oceans - TARA_B100000780 (ERX556058-ERR599059)	Environmental	Open in IMG/M
3300020389	Marine microbial communities from Tara Oceans - TARA_B100000809 (ERX556139-ERR599008)	Environmental	Open in IMG/M
3300020396	Marine microbial communities from Tara Oceans - TARA_B100000767 (ERX555915-ERR599122)	Environmental	Open in IMG/M
3300020399	Marine microbial communities from Tara Oceans - TARA_B100000470 (ERX555969-ERR598947)	Environmental	Open in IMG/M
3300020415	Marine microbial communities from Tara Oceans - TARA_B100001146 (ERX555973-ERR599166)	Environmental	Open in IMG/M
3300020431	Marine microbial communities from Tara Oceans - TARA_B100001142 (ERX556101-ERR598983)	Environmental	Open in IMG/M
3300020447	Marine microbial communities from Tara Oceans - TARA_B100000745 (ERX556090-ERR599159)	Environmental	Open in IMG/M
3300020469	Marine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052)	Environmental	Open in IMG/M
3300020595	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160412_1	Environmental	Open in IMG/M
3300021185	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015	Environmental	Open in IMG/M
3300024231	Seawater microbial communities from Monterey Bay, California, United States - 43D	Environmental	Open in IMG/M
3300024324 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_200_MG	Environmental	Open in IMG/M
3300024359	Seawater microbial communities from Monterey Bay, California, United States - 34D	Environmental	Open in IMG/M
3300025097	Marine viral communities from the Subarctic Pacific Ocean - 2_ETSP_OMZ_AT15125 metaG (SPAdes)	Environmental	Open in IMG/M
3300025108	Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG (SPAdes)	Environmental	Open in IMG/M
3300025110	Marine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaG (SPAdes)	Environmental	Open in IMG/M
3300025128	Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes)	Environmental	Open in IMG/M
3300025138	Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)	Environmental	Open in IMG/M
3300025168	Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)	Environmental	Open in IMG/M
3300025645	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (SPAdes)	Environmental	Open in IMG/M
3300025690	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110331 (SPAdes)	Environmental	Open in IMG/M
3300025694	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120426 (SPAdes)	Environmental	Open in IMG/M
3300025869	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405 (SPAdes)	Environmental	Open in IMG/M
3300025890	Pelagic Microbial community sample from North Sea - COGITO 998_met_08 (SPAdes)	Environmental	Open in IMG/M
3300026209	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV65 (SPAdes)	Environmental	Open in IMG/M
3300027522	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG058-DNA (SPAdes)	Environmental	Open in IMG/M
3300027553	Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_04_M0_20 (SPAdes)	Environmental	Open in IMG/M
3300027685	Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - Bottom_A/KNORR_S2/LV (SPAdes)	Environmental	Open in IMG/M
3300027687	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes)	Environmental	Open in IMG/M
3300027780	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_90 (SPAdes)	Environmental	Open in IMG/M
3300027788	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88 (SPAdes)	Environmental	Open in IMG/M
3300027810	Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean ARC135M Metagenome (SPAdes)	Environmental	Open in IMG/M
3300027813	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152 (SPAdes)	Environmental	Open in IMG/M
3300027833	Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)	Environmental	Open in IMG/M
3300027838	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)	Environmental	Open in IMG/M
3300027839	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_86 (SPAdes)	Environmental	Open in IMG/M
3300027847	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126 (SPAdes)	Environmental	Open in IMG/M
3300028177	Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI106_120	Environmental	Open in IMG/M
3300028190	Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_1000m	Environmental	Open in IMG/M
3300028197	Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_10m	Environmental	Open in IMG/M
3300028489	Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_1000m	Environmental	Open in IMG/M
3300031175	Marine microbial communities from water near the shore, Antarctic Ocean - #349	Environmental	Open in IMG/M
3300031519	Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2	Environmental	Open in IMG/M
3300031569	Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 1.2	Environmental	Open in IMG/M
3300031598	Marine microbial communities from water near the shore, Antarctic Ocean - #284	Environmental	Open in IMG/M
3300031599	Marine microbial communities from water near the shore, Antarctic Ocean - #71	Environmental	Open in IMG/M
3300031621	Marine microbial communities from Western Arctic Ocean, Canada - AG5_Surface	Environmental	Open in IMG/M
3300031628	Marine microbial communities from water near the shore, Antarctic Ocean - #229	Environmental	Open in IMG/M
3300031644	Marine microbial communities from water near the shore, Antarctic Ocean - #5	Environmental	Open in IMG/M
3300031656	Marine microbial communities from water near the shore, Antarctic Ocean - #67	Environmental	Open in IMG/M
3300031695	Marine microbial communities from water near the shore, Antarctic Ocean - #233	Environmental	Open in IMG/M
3300031721	Marine microbial communities from water near the shore, Antarctic Ocean - #181	Environmental	Open in IMG/M
3300031766	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 21515	Environmental	Open in IMG/M
3300031861	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 3416	Environmental	Open in IMG/M
3300032088	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 21515	Environmental	Open in IMG/M
3300032130	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 34915	Environmental	Open in IMG/M
3300034695	Seawater microbial communities from the Northeast subarctic Pacific Ocean - P26_June_2012_500m	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
DelMOSum2011_100931841	3300000115	Marine	IFMHENEHMNGYVFTDLVSKMKLDRAKKAQKKLIKETVRRQNR*
SI60aug11_150mDRAFT_10072635	3300000188	Marine	MSARIFMHENEHMNGYVFTDLVSKLKLERAEKSKXKMIKEIKRRQGAPKIIK*
SI34jun09_120mDRAFT_10386183	3300000225	Marine	ARIFMHENEHMNGYVFTDLVSKLKLERAEKSKQKMIKEIKRRQSGITF*
OpTDRAFT_101094234	3300000928	Freshwater And Marine	IFMHENEHMNGYVFTDLVSKLKLERAEKAKGKMIKELKKRQDAPKIIH*
JGI20156J14371_101451841	3300001347	Pelagic Marine	FMHENEHMNGYVFTDLVSKLKLERAEKSKQKMIKEIKRRQGAPKIIK*
JGI24006J15134_100604651	3300001450	Marine	IFQHENEHMNGYVFTDLVSKLKLERAEKTKAKMIKEIQKRQNTPRIIT*
JGI24006J15134_101538572	3300001450	Marine	MNGYVFTDLVSKLKLERAEKSKQKMIKEIKKRQSGLRIIT*
JGI24005J15628_100619992	3300001589	Marine	MPGRIFQHENEHMNGYVFTDLVSKLKLERAEKVKTKMIKEIQKRQNTPRIIT*
JGI24005J15628_101960692	3300001589	Marine	GRIFQHENEHMNGYVFTDLVSKLKLERAEKTKAKXIKXIQKRQNTPRIIT*
JGI24928J39210_10122793	3300002754	Marine	HENEHMNGYVFTDLVSKLKLERAEKSKQKMIKEIKRRQGAPKIIK*
JGI26247J51722_10667063	3300003588	Marine	ARIFMHENEHMNGYVFTDLVSKLKLERAEKSKXKMIKEIKRRQGAPKIIK*
JGI26273J51734_100323801	3300003620	Marine	RIFMHENEHMNGYVFTDLVSKLKLERAEKSKQKMIKEIKRRQGAPKIIK*
Ga0055584_1008430381	3300004097	Pelagic Marine	EHMNGYVFTDLVSKLKLERAEKSKQKMIKEIKRRQGAPKIIK*
Ga0008649_102307551	3300005838	Marine	MNGYVFTDLVSKLKLERAEKSKQKMIKEIKRRQSGIVA*
Ga0066369_102139871	3300005969	Marine	ENEHMNGYVFTDLVSKLKLERAEKSKQKMIKEIRKRQKGLQIIT*
Ga0082018_11014372	3300006091	Marine	EHMNGYVFTDLVSKMKLGRAEKVKEKMIKEIQKRQGTPKIVH*
Ga0075447_100545203	3300006191	Marine	GYVFTDLVSKLKLERAEKSKQKIIKEIKKRQSGLQIIT*
Ga0098033_11987961	3300006736	Marine	MNGYVFTDLVSKMKLERAEKAKEKMIKEIQKRQGNPKIVH*
Ga0098048_10076091	3300006752	Marine	MDARIFMHENEHMNGYVFTDLVSKLKLERAEKSKQKMIKEIKRRQGASKIIQ*
Ga0066376_105339061	3300006900	Marine	MPARIFMHENEHMNGYVFTDLVSKLKLERAEKSKQKMIKEIRKRQSGLQIIT*
Ga0098060_10255621	3300006921	Marine	ENEHMNGYVFIDLVSKLKLERAEKAKEKMIKEIKRRQGAPKIIH*
Ga0098051_10590601	3300006924	Marine	ARIFQHENEHMNGYVFTDLVSKLKLERTEKVKVKMIKELQKRQGTPKIVH*
Ga0098057_10776591	3300006926	Marine	GYVFTDLVSKLKLERAEKAKEKMIKEIQKRQATPKIIH*
Ga0098034_11214431	3300006927	Marine	HENEHMNGYVFTDLVSKLKLERAEKSKEKMIKEIQKRQGNPKIVH*
Ga0075444_103112531	3300006947	Marine	HENEHMNGYVFTDLVSKLKLERAEKSKQKMIKEIKKRQSGMQIIT*
Ga0110931_11282411	3300007963	Marine	MNGYVFTDLVSKLKLERAEKSKQKMIKEIKRRQSGLKF*
Ga0105748_100787241	3300007992	Estuary Water	HMNGYVFTDLVSKLKLERAEKSKQKMIKEIKRRQSGITF*
Ga0098052_13434421	3300008050	Marine	ARIFQHENEHMNGYVFTDLVSKLKLERAEKSKEKMIKELQKRQGNPKIVH*
Ga0102816_11505333	3300008999	Estuarine	GRIFQHENEHMNGYVFTDLVSKLKLERAEKAKQKIIKEVQKRQNASRIIT*
Ga0102854_10910351	3300009058	Estuarine	RIFQHENEHMNGYVFTDLVSKLKLERAEKTKAKMIKEIQKRQNTPRIIT*
Ga0102812_107934401	3300009086	Estuarine	IFMHENEHMNGYVFTDLVSKLKLERAEKSKQKMIKEIKRRQGAPKIIK*
Ga0117901_10089631	3300009103	Marine	IFMHENEHMNGYVFTDLVSKLKLERAEKSKQKMIKEIKRRQSGPKIIQ*
Ga0114995_103215401	3300009172	Marine	HMNGYVFTDLVSKLKLERAEKTKTKMIKEIKKRQAGLQIIT*
Ga0114996_106488783	3300009173	Marine	PGRIFQHENEHMNGYVFTDLVSKLKLERAEKTKAKLIKEIQKRQNTPRIIT*
Ga0114996_107901363	3300009173	Marine	SARIFMHENEHMNGYVFTDLVSKLKLERAEKTKAKIIKEIQKRQNTPRIIQ*
Ga0114993_108464331	3300009409	Marine	TDLVSKLKLERAEKSKQKMIKEIKKRQSGLRIIT*
Ga0114994_106473221	3300009420	Marine	NGYVFTDLVSKLKLERAEKVKAKMIKELQRKQGASKIIH*
Ga0115562_12158882	3300009434	Pelagic Marine	SARIFMHENEHMNGYVFTDLVSKLKLERAEKSKQKMIKEIKRRQSGIVA*
Ga0115007_108629643	3300009441	Marine	MNGYVFTDLVSKLKLERAEKAKQKIIKEVQKRQNASRIIT*
Ga0115553_12649591	3300009445	Pelagic Marine	RIFMHENEHMNGYVFTDLVSKLKLERAEKSKQKMIKEIKRRQSGLNF*
Ga0115570_101320201	3300009496	Pelagic Marine	ENEHMNGYVFTDLVSKLKLERAEKSKQKMIKEIKRRQSGITF*
Ga0115003_101683501	3300009512	Marine	VFTDLVSKLKLERAEKVKAKMIKELQRKQGASKIIH*
Ga0115004_100884941	3300009526	Marine	IFQHENEHMNGYVFTDLVSKLKLERAEKSKQKMIKELQKRQKGLQIIT*
Ga0115004_104554881	3300009526	Marine	MSARIFQHENEHMNGYVFTDLVGKLKLDRAKKAQKKLIKETIRKRNG*
Ga0115006_101055605	3300009544	Marine	MPGRIFQHENEHMNGYVFTDLVSKLKLERAEKTKTKLIKEIQKRQNTPRIIT*
Ga0115002_107912761	3300009706	Marine	EHMNGYVFTDLVSKLKLERAEKTKAKIIKEIQKRQNMPRIIQ*
Ga0115002_108070473	3300009706	Marine	LHGMPGRIFQHENEHMNGYVFTDLVSKLKLERAEKTKAKMIKEIQKRQNTPRIIT*
Ga0115001_100403267	3300009785	Marine	ENEHMNGYVFTDLVSKMKLDRAKKSQKKLIKETVRRQNR*
Ga0115001_102846033	3300009785	Marine	GMPARMFQHENEHMNGYVFTDLVSKLKLERAETSKKKMIKEIKKRQSGLQIIT*
Ga0114999_105054881	3300009786	Marine	GRIFQHENEHMNGYVFTDLVSKLKLERAEKTKAKMIKEIQKRQNTPRIIA*
Ga0114999_106064395	3300009786	Marine	SARIFQHENEHMNGYLFTDLVSKFKLDRAKKAQKKIIKETIRKRNG*
Ga0098061_10756893	3300010151	Marine	MNGYVFTDLVSKLKLERAVKAKEKMIKEIQKRQATPKIIH*
Ga0098047_101707101	3300010155	Marine	NEHMNGYVFTDLVSKLKLERAEKAKEKMIKEIQKRQATPKIIH*
Ga0134300_10226211	3300014818	Marine	MNGYVFTDLVSKLKLERAEKSKQKMIKEIKRRQSGIVT*
Ga0181374_10649382	3300017702	Marine	RIFQHENEHMNGYVFTDLVSKLKLERAEKAKEKMIKEIQKRQTTPKIVH
Ga0181391_10640901	3300017713	Seawater	HGMSARIFMHENEHMNGYVFTDLVSKLKLERAEKTKAKMIKEIQKRQNTPRIIT
Ga0181404_10631121	3300017717	Seawater	FQHENEHMNGYVFTDLVSKLKLERAEKTKAKMIKEIQKRQNTPRIIT
Ga0181373_10501831	3300017721	Marine	EDNEHSNGDVFTDLVSKLKLERAEKSKQKMIKEIKRRQGVPKIIK
Ga0181405_11790651	3300017750	Seawater	MNGYVFTDLVSKLKLERAEKAKGKMIKELKKRQDAPKIIH
Ga0181409_10636331	3300017758	Seawater	HENEHMNGYVFTDLVSKLKLERAEKSKQKMIKEIKRRQSGIVA
Ga0181414_11160542	3300017759	Seawater	SARIFMHENEHMNGYVFTDLVSKLKLERAEKSKQKMIKEIKRRQSGIVA
Ga0181386_11913852	3300017773	Seawater	RIFMHENEHMNGYVFTDLVSKLKLERAEKAKGKMIKELKKRQDAPKIIH
Ga0206125_100938391	3300020165	Seawater	YVFTDLVSKLKLERAEKSKQKMIKEIKRRQSGLNF
Ga0211685_10356531	3300020253	Marine	NEHMNGYVFTDLVSKLKLERAEKSKQKMIKEIRKRQKGLQIIT
Ga0211690_10747231	3300020335	Marine	YVFTDLVSKLKLERAEKSKQKIIKEIKKRQSGLQIIT
Ga0211690_10963042	3300020335	Marine	MNGYVFTDLVSKLKLERAEKTKTKLIKEIQKRQNTPRIIT
Ga0211683_100379321	3300020372	Marine	EHMNGYVFTDLVSKLKLERAEKSKQKMIKEIRKRQKGLQIIT
Ga0211683_101258051	3300020372	Marine	ETLHSMSGRIFQHENEHMNGYLFTDLVSKFKLDRAKKAQMKLIKETVRKQNG
Ga0211686_102108821	3300020382	Marine	PARIFMHENEHMNGYVFTDLVSKLKLERAEKSKQKMIKEIRKRQKGLQIIT
Ga0211686_104454771	3300020382	Marine	ENEHMNGYVFTDLVSKLKLERAEKSKQKMIKEIQKRQKGLQIIQ
Ga0211680_103514813	3300020389	Marine	SGRIFQHENEHMNGYVFTDLVSKLKLERAEKSKQKMIKEIQKRQRGLQIIT
Ga0211687_104266292	3300020396	Marine	HENEHMNGYVFTDLVSKLKLERAEKSKQKMIKEIQKRQNTPRIIT
Ga0211623_101916271	3300020399	Marine	NEHMNGYVFIDLVSKLKLERAEKAKEKMIKEIKRRQGAPKVLH
Ga0211553_101603641	3300020415	Marine	ENEHMNGYVFTDLVSKLKLERAEKTKAKMIKEIQKRQNTPRIIT
Ga0211554_101760393	3300020431	Marine	ENEHMNGYVFTDLVSKLKLERAEKSKQKMIKEIKRRQGAPKIIK
Ga0211691_100662681	3300020447	Marine	FQHENEHMNGYVFTDLVSKLKLERAEKAKQKIIKEVQKRQNAPRIIT
Ga0211577_103993181	3300020469	Marine	NEHMNGYVFTDLVSKLKLERAEKSKQKMIKEIKRRQSGIVA
Ga0206126_103950042	3300020595	Seawater	GYVFTDLVSKLKLERAEKSKQKMIKEIKRRQSGLNF
Ga0206682_103120463	3300021185	Seawater	PGRIFQHENEHMNGYVFTDLVSKLKLERAEKTKAKMIKEIQKRQNTPRIIT
Ga0206682_103249911	3300021185	Seawater	DKPARIFQHENEHMNGYVFTDLVSKLKLERAEKAKEKMIKEIKRRQGGPKVLH
Ga0206682_103744003	3300021185	Seawater	FQHENEHMNGYVFVDLVSKLKLERAEKAKDKMIKEIKRRQGDPKIIH
Ga0233399_10963101	3300024231	Seawater	RIFMHENEHMNGYVFTDLVSKLKLERAEKSKQKMIKEIKRRQSGITF
(restricted) Ga0233443_13183643	3300024324	Seawater	EHMNGYVFTDLVSKLKLERAEKSKQKMIKEIKRRQGAPKIIK
Ga0228628_10290931	3300024359	Seawater	GYVFTDLVSKLKLERAEKAKGKMIKELKKRQDAPKIIH
Ga0208010_10590231	3300025097	Marine	ENEHMNGYVFTDLVSKMKLERAEKAKEKMIKEIQKRQGNPKIVH
Ga0208793_11988672	3300025108	Marine	FMHENEHMNGYVFIDLVSKLKLERAEKSKQKMIKEIKRRQGAPKIIQ
Ga0208158_10979391	3300025110	Marine	NEHMNGYVFTDLVSKLKLERAEKSKQKMIKEIKRRQSGLKF
Ga0208919_11025631	3300025128	Marine	MNGYVFTDLVSKLKLERAEKSKQKMIKEIKRRQSGLKF
Ga0209634_10601985	3300025138	Marine	ENEHMNGYVFTDLVSKLKLERAEKTKTKLIKEIQKRQNTPRIIT
Ga0209634_11011191	3300025138	Marine	MNGYVFTDLVSKLKLERAEKTKAKIIKEIQKRQNTPRIIT
Ga0209634_11550701	3300025138	Marine	EHMNGYVFTDLVSKLKLERAEKSKQKMIKEIKKRQSGLRIIT
Ga0209634_12641551	3300025138	Marine	HMNGYVFTDLVSKLKLERAEKTKTKMIKEIKKRQAGLQIIT
Ga0209337_12578451	3300025168	Marine	HENEHMNGYVFTDLVSKLKLERAEKTKAKMIKEIQKRQNTPRIIQ
Ga0208643_10138286	3300025645	Aqueous	MNGYVFTDLVSKLKLERAEKSKQKMIKEIKRRQGAPKIIK
Ga0209505_11301723	3300025690	Pelagic Marine	MPGRIFQHENEHMNGYVFTDLVSKLKLERAEKTKAKMIKEIQKRQNTSRIIT
Ga0209406_11501581	3300025694	Pelagic Marine	ENEHMNGYVFTDLVSKLKLERAEKAKTKMIKEIQKRQNTSRIIT
Ga0209308_102176792	3300025869	Pelagic Marine	ARIFMHENEHMNGYVFTDLVSKLKLERAEKSKQKMIKEIKRRQSGLNF
Ga0209631_103269591	3300025890	Pelagic Marine	HMNGYVFIDLVSKLKLERAEKSKQKMIKEIKRRQSGLKF
Ga0207989_10687552	3300026209	Marine	YVFTDLVSKMKLERAEKAKEKMIKEIQKRQGNPKIVH
Ga0209384_10838551	3300027522	Marine	RIFQHENEHMNGYVFTDLVSKLKLERAEKSKQKMIKEIQRRQGAPKIIH
Ga0209384_11536092	3300027522	Marine	NEHMNGYVFTDLVSKLKLERAEKSKQKMIKEIKKRQSALQIIT
Ga0208947_11390511	3300027553	Marine	MNGYVFTDLVSKLKLERAEKAKEKMIKEIKRRQGGPKIIH
Ga0209554_11534802	3300027685	Marine	GYVFTDLVSKLKLERAEKSKQKMIKEIKKRQSRLQIIT
Ga0209710_12308941	3300027687	Marine	TLHSMSGRIFQHENEHMNGYLFTDLVSKFKLDRAKKAQMKLIKETVRKQNG
Ga0209502_100370301	3300027780	Marine	ETLHSMSGRIFQHENEHMNGYLFTDLVSKFKLDRAKKAQMKLIKETVRKRNG
Ga0209502_102715261	3300027780	Marine	GYVFTDLVSKLKLERAEKSKQKMIKEIKKRQSGLRIIT
Ga0209711_101992043	3300027788	Marine	NGYVFTDLVSKLKLERAEKSKQKMIKEIKKRQSGLRIIT
Ga0209711_102993411	3300027788	Marine	GRIFQHENEHMNGYVFTDLVSKLKLERAEKTKAKMIKEIQKRQNTPRIIQ
Ga0209711_104080932	3300027788	Marine	AARIFQHENEHMNGYIFTELVSKLKLDRAEKSKLKMIKEIQKKQNTPRIIQ
Ga0209302_101137664	3300027810	Marine	RIFQHENEHMNGYVFTDLVSKLKLERAEKTKAKMIKEIQRRQSGLTF
Ga0209090_102262101	3300027813	Marine	FTDLVSKLKLERAEKAKQKIIKEVQKRQNAPRIIT
Ga0209092_102902713	3300027833	Marine	ENEHMNGYVFTDLVSKLKLERAQKTKAKMIKEIQKRQNTPRIIT
Ga0209089_106206022	3300027838	Marine	EHMNGYVFTDLVSKLKLERAEKTKTKMIKEIKKRQAGLQIIT
Ga0209403_105562831	3300027839	Marine	ENEHMNGYVFTDLVSKLKLERAEKTKAKMIKEIQRRQSGLTF
Ga0209402_101748444	3300027847	Marine	IFQHENEHMNGYVFTDLVSKLKLERAEKTKAKIIKEIQKRQNTPRIIQ
Ga0257122_11427281	3300028177	Marine	GRIFQHENEHMNGYVFTDLVSKLKLERAEKTKAKMIKEIQKRQNTPRIIT
Ga0257108_10374334	3300028190	Marine	GRIFQHENEHMNGYVFIDLVSKLKLERAEKAKQKMIKEIKRRQGGTKILH
Ga0257110_10795051	3300028197	Marine	ENEHMNGYVFTDLVSKLKLERAEKVKAKMIKELQRKQGASKIIH
Ga0257112_100302791	3300028489	Marine	MNGYVFIDLVSKLKLERAEKVKQKMIKEIKRRQGAPKIFH
Ga0308020_11988301	3300031175	Marine	HENEHMNGYVFTDLVSKLKLERAEKSKQKMIKEIQKRQKGLQIIT
Ga0307488_108187463	3300031519	Sackhole Brine	FMHENEHMNGYVFTDLVSKLKLERAEKVKAKMIKELQRKQGAPKIIH
Ga0307489_104631933	3300031569	Sackhole Brine	LHGMPGRIFQHENEHMNGYVFTDLVSKLKLERAEKTKAKMIKEIQKRQNTPRIIT
Ga0308019_103467371	3300031598	Marine	NGYVFTDLVSKLKLERAEKSKQKMIKEIKKRQSGLQIIT
Ga0308007_102479741	3300031599	Marine	MNGYVFTDLVSKLKLERAEKSKQKMIKEIKKRQSGLQIIT
Ga0302114_103963722	3300031621	Marine	HGMPGRIFQHENEHMNGYVFTDLVSKLKLERAEKTKAKMIKEIQKRQNTPRIIT
Ga0308014_11318462	3300031628	Marine	VFTDLVSKLKLERAEKSKQKMIKEIQKRQKGLQIIQ
Ga0308014_11519931	3300031628	Marine	YVFTDLVSKLKLERAEKSKQKMIKEIQKRQRGLQIIT
Ga0308001_101606753	3300031644	Marine	IFQHENEHMNGYVFTDLVSKLKLERAEKSKQKMIKEIRKRQKGLQIIT
Ga0308005_100804572	3300031656	Marine	ENEHMNGYVFTDLVSKLKLERAEKSKQKMIKEIKKRQSGLQIIT
Ga0308016_101907983	3300031695	Marine	HENEHMNGYVFTDLVSKLKLERAEKSKQKMIKEIQRRQGAPKIIH
Ga0308016_102028342	3300031695	Marine	HMNGYVFTDLVSKLKLERAEKSKQKMIKEIKKRQSGLQIIT
Ga0308013_102362081	3300031721	Marine	NGYVFTDLVSKLKLERAEKSKQKVIKEIQKRQKGLQIIQ
Ga0308013_102543691	3300031721	Marine	PARMFQHENEHMNGYVFTDLVSKLKLERAEKSKQKMIKEIQKRQRGLQIIT
Ga0315322_108158773	3300031766	Seawater	HMNGYVFIDLVSKLKLERAEKAKEKMIKEIKRRQGAPKIVH
Ga0315319_104068593	3300031861	Seawater	NGYVFIDLVSKLKLERAEKAKQKMIKEIKRRQGAPKILH
Ga0315321_102055261	3300032088	Seawater	VFVDLVSKLKLERAEKAKEKMIKEIKRRQGAPKIIH
Ga0315333_101825981	3300032130	Seawater	ENEHMNGYVFTDLVSKLKLERAEKAKEKMIKEIKRRQGGPKIIH
Ga0372840_068033_931_1053	3300034695	Seawater	MNGYVFIDLVSKLKLERAEKAKQKMIKEIKRRQGAPKVLH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters