3300001416: Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 shallow-072012

Overview

Basic Information

• IMG/M Taxon OID: 3300001416
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0084162 | Gp0056264 | Ga0003462
• Sample Name: Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 shallow-072012
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 24009631
• Sequencing Scaffolds: 46
• Novel Protein Genes: 49
• Associated Families: 48

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	11
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	9
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Acidobacteria	9
Not Available	10
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter → Ktedonobacter racemifer	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Leptolyngbyaceae → Leptolyngbya → environmental samples → uncultured Leptolyngbya sp.	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): polar biome → polar → peat soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Barrow Environmental Observatory site, Barrow, Alaska
• Coordinates
  • Lat. (^o): 71.2999
  • Long. (^o): -156.61
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000214	Metagenome / Metatranscriptome	1570	Y
F000238	Metagenome / Metatranscriptome	1494	Y
F000602	Metagenome / Metatranscriptome	995	Y
F000655	Metagenome / Metatranscriptome	958	Y
F000870	Metagenome / Metatranscriptome	851	Y
F001328	Metagenome / Metatranscriptome	721	Y
F001357	Metagenome / Metatranscriptome	716	Y
F001823	Metagenome / Metatranscriptome	630	Y
F002094	Metagenome / Metatranscriptome	594	Y
F004330	Metagenome / Metatranscriptome	443	Y
F004490	Metagenome / Metatranscriptome	436	Y
F005270	Metagenome / Metatranscriptome	406	Y
F006596	Metagenome / Metatranscriptome	369	Y
F006755	Metagenome / Metatranscriptome	365	Y
F006909	Metagenome / Metatranscriptome	362	Y
F009370	Metagenome / Metatranscriptome	319	Y
F010710	Metagenome / Metatranscriptome	300	Y
F010727	Metagenome / Metatranscriptome	300	Y
F013442	Metagenome / Metatranscriptome	271	Y
F014451	Metagenome / Metatranscriptome	263	Y
F019346	Metagenome / Metatranscriptome	230	Y
F022716	Metagenome / Metatranscriptome	213	Y
F023425	Metagenome / Metatranscriptome	210	Y
F024219	Metagenome / Metatranscriptome	207	Y
F025118	Metagenome / Metatranscriptome	203	Y
F027940	Metagenome / Metatranscriptome	193	Y
F032093	Metagenome / Metatranscriptome	181	Y
F033563	Metagenome / Metatranscriptome	177	Y
F035126	Metagenome / Metatranscriptome	173	Y
F040273	Metagenome / Metatranscriptome	162	Y
F041362	Metagenome	160	Y
F041479	Metagenome / Metatranscriptome	160	Y
F041934	Metagenome / Metatranscriptome	159	Y
F041936	Metagenome / Metatranscriptome	159	Y
F045437	Metagenome / Metatranscriptome	153	Y
F045438	Metagenome / Metatranscriptome	153	Y
F049833	Metagenome	146	Y
F057547	Metagenome / Metatranscriptome	136	Y
F059473	Metagenome	134	Y
F067022	Metagenome / Metatranscriptome	126	Y
F067237	Metagenome / Metatranscriptome	126	Y
F071523	Metagenome / Metatranscriptome	122	Y
F071593	Metagenome	122	Y
F072806	Metagenome / Metatranscriptome	121	Y
F077571	Metagenome / Metatranscriptome	117	Y
F084877	Metagenome / Metatranscriptome	112	N
F092923	Metagenome	107	Y
F097897	Metagenome / Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI20176J14865_100025	All Organisms → cellular organisms → Bacteria	2893
JGI20176J14865_100104	All Organisms → cellular organisms → Bacteria	1918
JGI20176J14865_100170	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1682
JGI20176J14865_100174	All Organisms → cellular organisms → Bacteria	1665
JGI20176J14865_100565	All Organisms → cellular organisms → Bacteria → Proteobacteria	1133
JGI20176J14865_100818	All Organisms → cellular organisms → Bacteria → Acidobacteria	963
JGI20176J14865_100873	Not Available	945
JGI20176J14865_101086	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter → Ktedonobacter racemifer	867
JGI20176J14865_101107	Not Available	859
JGI20176J14865_101288	All Organisms → cellular organisms → Bacteria	813
JGI20176J14865_101411	Not Available	788
JGI20176J14865_101592	All Organisms → cellular organisms → Bacteria	758
JGI20176J14865_101675	All Organisms → cellular organisms → Bacteria	745
JGI20176J14865_101753	Not Available	734
JGI20176J14865_101824	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	726
JGI20176J14865_101839	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	724
JGI20176J14865_101853	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	723
JGI20176J14865_101886	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	719
JGI20176J14865_102063	All Organisms → cellular organisms → Bacteria	699
JGI20176J14865_102187	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	683
JGI20176J14865_102218	All Organisms → cellular organisms → Bacteria → Acidobacteria	680
JGI20176J14865_102243	Not Available	678
JGI20176J14865_102298	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	672
JGI20176J14865_102358	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	667
JGI20176J14865_102590	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	649
JGI20176J14865_102731	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	639
JGI20176J14865_102802	All Organisms → cellular organisms → Bacteria	634
JGI20176J14865_103033	All Organisms → cellular organisms → Bacteria	619
JGI20176J14865_103159	All Organisms → cellular organisms → Bacteria → Acidobacteria	612
JGI20176J14865_103186	All Organisms → cellular organisms → Bacteria	610
JGI20176J14865_103375	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	600
JGI20176J14865_103606	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	588
JGI20176J14865_103618	Not Available	587
JGI20176J14865_104272	All Organisms → cellular organisms → Bacteria → Acidobacteria	561
JGI20176J14865_104311	Not Available	559
JGI20176J14865_104804	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	541
JGI20176J14865_104992	All Organisms → cellular organisms → Bacteria → Acidobacteria	534
JGI20176J14865_105043	Not Available	532
JGI20176J14865_105217	All Organisms → cellular organisms → Bacteria	527
JGI20176J14865_105223	Not Available	527
JGI20176J14865_105250	All Organisms → cellular organisms → Bacteria → Acidobacteria	526
JGI20176J14865_105415	All Organisms → cellular organisms → Bacteria → Acidobacteria	522
JGI20176J14865_105487	Not Available	520
JGI20176J14865_105835	All Organisms → cellular organisms → Bacteria → Acidobacteria	510
JGI20176J14865_106011	All Organisms → cellular organisms → Bacteria → Acidobacteria	506
JGI20176J14865_106029	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Leptolyngbyaceae → Leptolyngbya → environmental samples → uncultured Leptolyngbya sp.	505

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI20176J14865_100025	JGI20176J14865_1000253	F041479	LLSMSLSPCCRFHPAEVNIRIGQSSAAHAAFALRLKARPSGILTFEATTRSLLLRPGDS*
JGI20176J14865_100104	JGI20176J14865_1001042	F072806	MGRTESLNLKNDYERACGWYGHFNKSEMALFSECTDRYAQKLLDTADIVREAIYQ*
JGI20176J14865_100170	JGI20176J14865_1001702	F009370	MFVGLRYLLGWVMSSFRSRQELLLENLALRQQLLVLHASDLARD*
JGI20176J14865_100174	JGI20176J14865_1001744	F025118	MRRISVQPAKDNVSRRLITAALVGLFCAVSTFGVAQSEPFQANSEAGASKVSVHSKFGGQIFGFDIDQNGTEGVLTEAKTLTNGNILAAVETFDQTTGKILSVVTKTQTQDDFVALGVVGTSVGLVEHEHVVSFLNVQRTFQVINPLSGNKITGKWTPPIGAKHLINQVSRTQRTSNAAIFAEDNSGNFIPWVFSSNVAANTFGPIVKIQDSFNFGSVPPPMAYNSVTNQAVLGGGDGCFGCLPVMGLADLGKGTFTEFTGIGFG
JGI20176J14865_100565	JGI20176J14865_1005652	F005270	MDSKFDSAPSGEVPGEDLASVVASLEPDQLISAKATHHCPRRQLTNAEMILFWVLRVYLVFMFGVVIYQVWTSTR*
JGI20176J14865_100818	JGI20176J14865_1008181	F023425	RIAQAKHTDIQGLPNMMLDLRSVLEWYPEMAGAYDLLAVARNEGGSTPAAMQAERAAINLSPRDELFTYHLAQIYVASKKWEAAQAQLDRLKASSNPQIVALAKDLQERSGAERKYGIPLGGSVPQPKLAPQKSPFDVLEEDAAKRAAAENPTQATGPEDKHSTKFVKGRLVAVDCSKAPAAVLTVAAEGATLKLHAADYKSLVLIGANDFSCDWRDRQVTVNYKPGGPTTGDVISLEMR
JGI20176J14865_100873	JGI20176J14865_1008732	F004490	MECRTKDELEQHLSDIRRLATRPALTSEEQDAAVRAERFAIGLLREHDESGHHGKRCPFATRI*
JGI20176J14865_101086	JGI20176J14865_1010862	F022716	MKKAESIKYYVTYSITHPEYTPTTATGLVEARTRLDLDGRLARGIGMWKKRGYGVEIVKVTCMDDFQWAAQD*
JGI20176J14865_101107	JGI20176J14865_1011072	F071593	MSLFAWGQSSHRPQSTAPKPEAAPTGAINPELETMTRAAAIQARPDQVGYFRSAIASTDTALQQSRELQTLGPDAQSTPIVNAKSLQLRDAIDDVEHYYGRLIASFSRIQSTELKPLTKRLRKSYTFVAKEYKTVQQRMEPGRVVPERLTSGAANLEKALSDFRTDQVRLAREMGIQSK*
JGI20176J14865_101288	JGI20176J14865_1012882	F033563	MNKPKHAALGIALGAVLGAVFGVLAGNMGVWLAAGVAIGVLIGASFRRRTTECPQCAQV
JGI20176J14865_101411	JGI20176J14865_1014111	F001823	MRVIDRDLIRGGHYGQRSCEPRLKAEHTGAPTNSASVKKVLANSEPSTHGGIAAA
JGI20176J14865_101592	JGI20176J14865_1015922	F000655	MIWWFLILGVSTLVVVCVAIALYVHLRHNLQKAHASHDAPRAEVERPRESNGIER*
JGI20176J14865_101675	JGI20176J14865_1016751	F041934	ENKMIFVKEAENTMAPVLLERYGAAAANQPSARAARTAVNNRRGDFGTSPSVAESK*
JGI20176J14865_101753	JGI20176J14865_1017531	F057547	MGLGPPCAARACSFITLAACVRQLPFWLLNSRVVTECVHSRHLKLLKPFIILIV*
JGI20176J14865_101824	JGI20176J14865_1018241	F027940	CRNRRNGSIIFCKEVAVGNAQSKLNMHRLTFTLRLLAVVVSSPVIVLVIAFATLLHPITSLKTKFHTSLRIWMSVMDWIKGIPIGYTYWVQYHAPSMLDEIAVHHEE*
JGI20176J14865_101839	JGI20176J14865_1018391	F045438	GVIHESGNGTATPCTATAIDPTAQIVMASGHADSRSNLNYAQNQLYCTASPTGYQLPCPNPANAIASAVDIVNFHMKPGNAKGNNCPAPVPCTPETAMQAYVSNARGILQPAELAKPLWNGEASYAEAGFTGAYTDADMAASFMPRFYLGSWSLNISGIAWYDWTYMTTQPAAVQTAYQQTYNWLAGSVLTTPCAAAGTVWSCTITKSGKQYQIMWDASQSCANGSCTLANQTVGSQWTK
JGI20176J14865_101853	JGI20176J14865_1018532	F041936	KPQDLAGVVVIFDSADGGMVAATMATLQQWKAGTLSDSALWHKCFFDPPETFDSSGSSASQ*
JGI20176J14865_101886	JGI20176J14865_1018862	F013442	LLSGARLAEDLRFELAILATVQGFYQKLMRDALGGDVPIPSGLDEDALRHSERELPTTLSRMYRWLHLLDMAITPAMVRQALTPDTDSEV
JGI20176J14865_102063	JGI20176J14865_1020632	F024219	QGGPFVEMRARVRFNCTSGAAAPTTEWFYSRDHSGRFVVSKKATHDDQFGRNPEGGFVELVSKDVCSQTK*
JGI20176J14865_102187	JGI20176J14865_1021872	F067237	MKLVAMKRLSLAVLAVAIVAAVPAYADEWSKTYNVSGRADLRIETSDANIHVTTWDQNTIEAKVVTNRYKIGEGGIRVE
JGI20176J14865_102218	JGI20176J14865_1022181	F097897	MAKRRFIFFDVGNTLLFPNRARMLAPLPEDRHPTLQAWQALERRTKREF
JGI20176J14865_102218	JGI20176J14865_1022182	F000602	MALPAAISLIAGFTRSTRAALAAYAIARAYAAVFFGVAVTVFYRGTREDVYNILWAVVFGFATLNILSLAARRLEPTRRGLTFGELMAVMVVLLSIFLLGWEMLHLFHIFPIKLKP*
JGI20176J14865_102243	JGI20176J14865_1022432	F059473	MPEERERSAVLIAACLIAAIRLRGEPIQASPKLKATIYDSVQLAVLVWREI
JGI20176J14865_102298	JGI20176J14865_1022981	F010727	EMTGGQENVTIQCKGRVVRADETGSGGEGRGVACVIDSYEFVRNS*
JGI20176J14865_102358	JGI20176J14865_1023581	F010710	VLFIAAAASNGADFAVTRANLQSGGQELNPLVRMFGRSTPGLAMNFIGETAGVISLSYFFHKTGHHKMERLVSVVNIGSSAGAVGFGLAHR*
JGI20176J14865_102590	JGI20176J14865_1025901	F014451	GLLRTIMEKKILDDTLKGQLQAVIKEAKQQFVASREAVAK*
JGI20176J14865_102731	JGI20176J14865_1027311	F077571	LNSPLQSRVPAVPDTFPSTFWCPDLVSTRDLGPQGVQAVLHLAELMKSRPS
JGI20176J14865_102802	JGI20176J14865_1028022	F032093	QQLEKQFGPAYAAWVAELGETRRLILASDLDKERKLDLLHSLASREALEAALAEKPDLAAKGEGA*
JGI20176J14865_103033	JGI20176J14865_1030332	F000870	LYYSKEPHGPRRLLGAGVAPLMDSSTDNRSPQQKTARELIWTSNHSFHGWTCSQCEWNSPVPTLLNDPEAKTAFDRLAAGKFRDHKCADHLSRLGSADDADSFTPRIRKLVTQGFKPKDAVELFLQEIALEYRNQPKVLAQAKADGEDFLRRVRAGLI*
JGI20176J14865_103159	JGI20176J14865_1031591	F067022	RGWNGSFEAIPFTRFPRLGLVADGSGFYRSGVKQYNIVGGPRFSVSYGKWRPFVHAMAGIRHVNSYGFVYNPLAIDIGGGADYKLPFKNFSWRLQGDYMHGHYASANQDDYRASTGVVWRF*
JGI20176J14865_103186	JGI20176J14865_1031861	F071523	MVALVLIESVRQWIGVLSGREEARVKEAPFVMTRLAEERG*
JGI20176J14865_103275	JGI20176J14865_1032752	F000238	MDAELVTSAPTSRVPRWYAIPVRVGLVTFIGTLLCFAVSLLFAIFGTVIVASLRGVHPDMRIAYRHIALPVAVVAGVIIFSLALTMEIRHYRQAKALAAIEKLS*
JGI20176J14865_103375	JGI20176J14865_1033751	F001357	MKRILWMALLSLALPMAAFAGSSVDFTNSGGTLSGSSAGLTLSGSELIAVNGLNGLGLVTGNLGSVGFSTGALSTGNLQMGATFAGGGNFTITGNGTGGIPNGAIFTGTFDGPVTWTLVTLANGTHNYT
JGI20176J14865_103606	JGI20176J14865_1036061	F006755	LSLGGGMGTKEDNLRIGSEADLEISLGMRSKIRAHVLLRRARVNEVGFEIVNTDLESRYRLRRLLVEALNNAQQSKGQEWSGDRKL*
JGI20176J14865_103618	JGI20176J14865_1036181	F002094	FGKPNGELGTVERANDEDAVVKWDDDGRTRLHQPSLKKI*
JGI20176J14865_104272	JGI20176J14865_1042722	F035126	IETLRSALDQMRHFLWFYSEVMSNEPELGDKLRQACPSKTASDETPKTGSAFLDQLSRADELMLLHHLADARRRKPN*
JGI20176J14865_104311	JGI20176J14865_1043111	F001823	MRAFDRDLIRGGHYGQRPRVPRLKAEHMAAPTNAANVKKALANSEPSTHGTXR
JGI20176J14865_104804	JGI20176J14865_1048042	F092923	LKYFLDSSARRVRLLALAVLVAAIGGTVSALAELPSWIRNIDASSAGEAVFFRMMSLPNGAVAFRRPPRETRPALTDLIKTQ
JGI20176J14865_104992	JGI20176J14865_1049921	F001328	VAAQYFYCTQCHKKYPTHHKLFDTLYDFSKIAPEDCPACGVMRELHITLDFQLGVGDGEFKVVSAFLPDKLESWLGEEQEEVTFYPFMVVLEGGVESKQFCWMPYWHVVGKEARYGQHAVCLDQTQFESLIAQVQDKVLEP
JGI20176J14865_105043	JGI20176J14865_1050431	F040273	MPYTRPMRRFYLTAPRVVTFAVSILLAILALLIAYGHVVPLHGINGFVILLIAYVVLVAGTLLRGV*
JGI20176J14865_105217	JGI20176J14865_1052171	F041362	APGSKIKLGFSMDDPTLSAEGVVARLDPGSGVAVQFREANREGRERMFKILEFVQKTTAFYNNRYLDTLTKS*
JGI20176J14865_105223	JGI20176J14865_1052231	F019346	VINKCVVLLLSSILLAALPAFAGQHVAVHPRTSIDSPDQSTIREIVEMERQAKEASIRRDADFSQRTLAEDYIAITP
JGI20176J14865_105250	JGI20176J14865_1052501	F006909	AARRAVAEQMHSEMRETLTAMLLSCELAMSVPDVPHPAVEKIRAIDNLARELRLRLEVN*
JGI20176J14865_105415	JGI20176J14865_1054151	F004330	PEARAEDVNASILIAAESAASYPGLKEAAQYFFPLTEVAKAQGFTPDEDPYEIAIGTKTLIRGDFHKDVGTRVMRQSTLAMLSHGYAISITVIGGTDDEVEDLVDGLTFSSR*
JGI20176J14865_105487	JGI20176J14865_1054871	F049833	AAWMLALAAAALFLDSLKLSPGDRFLLRTLQPTLASTALSHVLHGTLLRYLWAKVVVAAGLTVLWCFAAAAGRAASLRNLVALFGGDDRAEDAGWQFRPMFVLHCVRALWTWTAIGCLVGSIFLGTAMLQQQRAARAAFFYVFGTVLSLVFGVMLNWFFGLAPLFCIRDQATV
JGI20176J14865_105807	JGI20176J14865_1058071	F000214	MKNVYEVLRQKEMELTRLEKEVEALRLVAPLLSEEKEMNSDMVKPALATAVNGPQAAPRMSVPAPPSIPAPQPVRAAGWDDTAKRWP*
JGI20176J14865_105835	JGI20176J14865_1058352	F006596	QVRDGRIITLEPSNMPARRVRVVERKGPERRREFAQDVTAEVPPEKINTKPDENFFVTGA
JGI20176J14865_106011	JGI20176J14865_1060112	F045437	VSDRELSVMRMIDRDFQHDVLEKLSRMEARMEMLVGNGQPGRMTLAEDRIVELERNDVRRTVIERFVNAGIAVLISVAVALHGHWWK*
JGI20176J14865_106029	JGI20176J14865_1060292	F084877	TRLTWTGNREGTAAWRESVGHCEGVDGTAAQGPCDMAKTGLFEAQFPGMEMCILRHTTPGAEPPVSGESPLLRPNSSGWWTVSSELTQGNGQAAYVTLDTSSARGIRDRLRGASPMVTECQ*