Metagenome / Metatranscriptome Family F071523

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F071523
Family Type	Metagenome / Metatranscriptome
Number of Sequences	122
Average Sequence Length	43 residues
Representative Sequence	MVALVLIESVRQWIGVLSGREEARVKEAPFVMTRLAEERG
Number of Associated Samples	108
Number of Associated Scaffolds	122

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	94.26 %
% of genes from short scaffolds (< 2000 bps)	88.52 %
Associated GOLD sequencing projects	103
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (68.033 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (13.934 % of family members)
Environment Ontology (ENVO)	Unclassified (24.590 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (53.279 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 23.53% β-sheet: 0.00% Coil/Unstructured: 76.47%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.36
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.36
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 122 Family Scaffolds
PF02075	RuvC	25.41
PF01019	G_glu_transpept	16.39
PF09720	Unstab_antitox	7.38
PF01850	PIN	1.64
PF05016	ParE_toxin	1.64
PF12704	MacB_PCD	0.82
PF12840	HTH_20	0.82
PF03734	YkuD	0.82
PF13722	CstA_5TM	0.82
PF13602	ADH_zinc_N_2	0.82
PF11949	DUF3466	0.82
PF13229	Beta_helix	0.82
PF13360	PQQ_2	0.82
PF01875	Memo	0.82
PF02641	DUF190	0.82
PF07617	DUF1579	0.82
PF08323	Glyco_transf_5	0.82

COG ID	Name	Functional Category	% Frequency in 122 Family Scaffolds
COG0817	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	Replication, recombination and repair [L]	25.41
COG0405	Gamma-glutamyltranspeptidase	Amino acid transport and metabolism [E]	16.39
COG0297	Glycogen synthase	Carbohydrate transport and metabolism [G]	0.82
COG0438	Glycosyltransferase involved in cell wall bisynthesis	Cell wall/membrane/envelope biogenesis [M]	0.82
COG1355	Predicted class III extradiol dioxygenase, MEMO1 family	General function prediction only [R]	0.82
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	0.82
COG1993	PII-like signaling protein	Signal transduction mechanisms [T]	0.82
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	0.82

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	68.03 %
Unclassified	root	N/A	31.97 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	68.03 %
Unclassified	root	N/A	31.97 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	68.03 %
Unclassified	root	N/A	31.97 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	55.74 %
Unclassified	root	N/A	31.97 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.46 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.97 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	18.85 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	13.93 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2.46 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.97 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	13.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.11 %
Candidatus Acidoferrales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales	4.10 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	2.46 %
Acidobacteria bacterium SCGC AG-212-P17	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCGC AG-212-P17	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.97 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	13.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.11 %
Candidatus Acidoferrum	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum	4.10 %
Xanthomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae	2.46 %
Acidobacteria bacterium SCGC AG-212-P17	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCGC AG-212-P17	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.97 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.11 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	9.02 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	4.10 %
Luteimonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Luteimonas	2.46 %
Acidobacteria bacterium SCGC AG-212-P17	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCGC AG-212-P17	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.97 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.11 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	4.10 %
Luteimonas gilva	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Luteimonas → Luteimonas gilva	2.46 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1.64 %
Acidobacteria bacterium SCGC AG-212-P17	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCGC AG-212-P17	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.97 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.11 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	4.10 %
Luteimonas gilva	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Luteimonas → Luteimonas gilva	2.46 %
Candidatus Koribacter versatilis Ellin345	isolate	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis → Candidatus Koribacter versatilis Ellin345	0.82 %
Acidobacteria bacterium SCGC AG-212-P17	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCGC AG-212-P17	0.82 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2199352024\|deeps__Contig_76098	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1560	Open in IMG/M
3300001356\|JGI12269J14319_10027847	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	3832	Open in IMG/M
3300001416\|JGI20176J14865_103186	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300003693\|Ga0032354_1102661	Not Available	531	Open in IMG/M
3300004082\|Ga0062384_100176801	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1237	Open in IMG/M
3300004092\|Ga0062389_104182770	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	543	Open in IMG/M
3300004635\|Ga0062388_100208269	All Organisms → cellular organisms → Bacteria	1551	Open in IMG/M
3300004635\|Ga0062388_101219767	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	745	Open in IMG/M
3300005179\|Ga0066684_10429026	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	888	Open in IMG/M
3300005187\|Ga0066675_10732469	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	744	Open in IMG/M
3300005436\|Ga0070713_100011465	All Organisms → cellular organisms → Bacteria → Acidobacteria	6457	Open in IMG/M
3300005468\|Ga0070707_101239206	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	712	Open in IMG/M
3300005526\|Ga0073909_10465789	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	606	Open in IMG/M
3300005587\|Ga0066654_10799776	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300005602\|Ga0070762_10798755	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	638	Open in IMG/M
3300005610\|Ga0070763_10112368	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1386	Open in IMG/M
3300005610\|Ga0070763_10346982	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	825	Open in IMG/M
3300006032\|Ga0066696_10453455	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	840	Open in IMG/M
3300006052\|Ga0075029_100015952	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4171	Open in IMG/M
3300006174\|Ga0075014_100442151	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	717	Open in IMG/M
3300009500\|Ga0116229_11136797	Not Available	624	Open in IMG/M
3300009518\|Ga0116128_1113904	All Organisms → cellular organisms → Bacteria → Acidobacteria	790	Open in IMG/M
3300009518\|Ga0116128_1134967	All Organisms → cellular organisms → Bacteria → Acidobacteria	711	Open in IMG/M
3300009524\|Ga0116225_1029036	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2762	Open in IMG/M
3300009524\|Ga0116225_1475206	Not Available	555	Open in IMG/M
3300010048\|Ga0126373_11382804	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	769	Open in IMG/M
3300010048\|Ga0126373_11474697	Not Available	746	Open in IMG/M
3300010361\|Ga0126378_10682604	All Organisms → cellular organisms → Bacteria → Acidobacteria	1139	Open in IMG/M
3300010366\|Ga0126379_13872674	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	501	Open in IMG/M
3300010379\|Ga0136449_103777958	Not Available	570	Open in IMG/M
3300012200\|Ga0137382_11298625	All Organisms → cellular organisms → Bacteria → Acidobacteria	514	Open in IMG/M
3300012201\|Ga0137365_11280211	Not Available	521	Open in IMG/M
3300012203\|Ga0137399_10918693	All Organisms → cellular organisms → Bacteria	737	Open in IMG/M
3300012209\|Ga0137379_11301424	Not Available	632	Open in IMG/M
3300012351\|Ga0137386_10445400	All Organisms → cellular organisms → Bacteria	933	Open in IMG/M
3300012363\|Ga0137390_11146955	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	726	Open in IMG/M
3300012683\|Ga0137398_10102154	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1805	Open in IMG/M
3300012927\|Ga0137416_11722939	Not Available	572	Open in IMG/M
3300014489\|Ga0182018_10299824	All Organisms → cellular organisms → Bacteria → Acidobacteria	874	Open in IMG/M
3300015374\|Ga0132255_103908868	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	633	Open in IMG/M
3300016294\|Ga0182041_11597920	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	602	Open in IMG/M
3300017948\|Ga0187847_10583911	Not Available	624	Open in IMG/M
3300017948\|Ga0187847_10847892	Not Available	519	Open in IMG/M
3300017955\|Ga0187817_10000212	All Organisms → cellular organisms → Bacteria → Acidobacteria	22789	Open in IMG/M
3300017970\|Ga0187783_10013957	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5923	Open in IMG/M
3300017975\|Ga0187782_11478757	Not Available	535	Open in IMG/M
3300017999\|Ga0187767_10202265	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	628	Open in IMG/M
3300018007\|Ga0187805_10168316	All Organisms → cellular organisms → Bacteria → Acidobacteria	998	Open in IMG/M
3300018030\|Ga0187869_10578518	Not Available	532	Open in IMG/M
3300018043\|Ga0187887_10182198	All Organisms → cellular organisms → Bacteria → Acidobacteria	1252	Open in IMG/M
3300018062\|Ga0187784_10015769	All Organisms → cellular organisms → Bacteria → Acidobacteria	6109	Open in IMG/M
3300018062\|Ga0187784_10373787	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1154	Open in IMG/M
3300019786\|Ga0182025_1007262	All Organisms → cellular organisms → Bacteria → Acidobacteria	1162	Open in IMG/M
3300019786\|Ga0182025_1033830	All Organisms → cellular organisms → Bacteria → Acidobacteria	1104	Open in IMG/M
3300020579\|Ga0210407_10632480	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	833	Open in IMG/M
3300020581\|Ga0210399_11050565	Not Available	654	Open in IMG/M
3300020583\|Ga0210401_10183373	All Organisms → cellular organisms → Bacteria → Acidobacteria	1949	Open in IMG/M
3300021168\|Ga0210406_11043851	Not Available	605	Open in IMG/M
3300021170\|Ga0210400_10077873	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2603	Open in IMG/M
3300021171\|Ga0210405_10328414	All Organisms → cellular organisms → Bacteria → Acidobacteria	1208	Open in IMG/M
3300021402\|Ga0210385_11444055	Not Available	526	Open in IMG/M
3300021407\|Ga0210383_10731019	All Organisms → cellular organisms → Bacteria → Acidobacteria	850	Open in IMG/M
3300021420\|Ga0210394_10207213	Not Available	1711	Open in IMG/M
3300021432\|Ga0210384_10775720	All Organisms → cellular organisms → Bacteria	856	Open in IMG/M
3300021433\|Ga0210391_11540277	Not Available	509	Open in IMG/M
3300021474\|Ga0210390_11123857	All Organisms → cellular organisms → Bacteria → Acidobacteria	637	Open in IMG/M
3300021475\|Ga0210392_10547321	Not Available	856	Open in IMG/M
3300021479\|Ga0210410_11758829	All Organisms → cellular organisms → Bacteria → Acidobacteria	514	Open in IMG/M
3300021858\|Ga0213852_1007683	Not Available	559	Open in IMG/M
3300021858\|Ga0213852_1293694	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis → Candidatus Koribacter versatilis Ellin345	1183	Open in IMG/M
3300021861\|Ga0213853_10493846	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	855	Open in IMG/M
3300021861\|Ga0213853_11524649	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	636	Open in IMG/M
3300024295\|Ga0224556_1051158	Not Available	1020	Open in IMG/M
3300025442\|Ga0208034_1085154	Not Available	560	Open in IMG/M
3300025922\|Ga0207646_10970282	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	752	Open in IMG/M
3300025939\|Ga0207665_10991576	Not Available	668	Open in IMG/M
3300027080\|Ga0208237_1067500	All Organisms → cellular organisms → Bacteria → Acidobacteria	525	Open in IMG/M
3300027168\|Ga0208239_1022168	Not Available	611	Open in IMG/M
3300027559\|Ga0209222_1006365	Not Available	2509	Open in IMG/M
3300027625\|Ga0208044_1061442	All Organisms → cellular organisms → Bacteria	1169	Open in IMG/M
3300027783\|Ga0209448_10243970	All Organisms → cellular organisms → Bacteria → Acidobacteria	593	Open in IMG/M
3300027854\|Ga0209517_10120888	Not Available	1723	Open in IMG/M
3300027857\|Ga0209166_10066907	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCGC AG-212-P17	2052	Open in IMG/M
3300027879\|Ga0209169_10605283	All Organisms → cellular organisms → Bacteria → Acidobacteria	572	Open in IMG/M
3300027884\|Ga0209275_10243762	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Luteimonas → Luteimonas gilva	984	Open in IMG/M
3300027986\|Ga0209168_10299787	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	790	Open in IMG/M
3300028792\|Ga0307504_10369455	Not Available	557	Open in IMG/M
3300028798\|Ga0302222_10334536	Not Available	590	Open in IMG/M
3300029636\|Ga0222749_10395533	All Organisms → cellular organisms → Bacteria	731	Open in IMG/M
3300029907\|Ga0311329_10393267	All Organisms → cellular organisms → Bacteria → Acidobacteria	972	Open in IMG/M
3300029911\|Ga0311361_10487945	All Organisms → cellular organisms → Bacteria	1236	Open in IMG/M
3300029922\|Ga0311363_10953940	Not Available	760	Open in IMG/M
3300029945\|Ga0311330_10247134	All Organisms → cellular organisms → Bacteria	1582	Open in IMG/M
3300029951\|Ga0311371_12438332	Not Available	535	Open in IMG/M
3300029999\|Ga0311339_10780975	All Organisms → cellular organisms → Bacteria → Acidobacteria	922	Open in IMG/M
3300030007\|Ga0311338_11807912	Not Available	550	Open in IMG/M
3300030044\|Ga0302281_10354981	Not Available	573	Open in IMG/M
3300030509\|Ga0302183_10220003	All Organisms → cellular organisms → Bacteria → Acidobacteria	740	Open in IMG/M
3300030991\|Ga0073994_12381300	All Organisms → cellular organisms → Bacteria	569	Open in IMG/M
3300031090\|Ga0265760_10272029	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	593	Open in IMG/M
3300031170\|Ga0307498_10155684	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	762	Open in IMG/M
3300031241\|Ga0265325_10078331	All Organisms → cellular organisms → Bacteria	1646	Open in IMG/M
3300031708\|Ga0310686_104130312	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Luteimonas → Luteimonas gilva	949	Open in IMG/M
3300031715\|Ga0307476_10149982	All Organisms → cellular organisms → Bacteria → Acidobacteria	1674	Open in IMG/M
3300031718\|Ga0307474_10482082	All Organisms → cellular organisms → Bacteria → Acidobacteria	971	Open in IMG/M
3300031718\|Ga0307474_11235796	Not Available	590	Open in IMG/M
3300031718\|Ga0307474_11475969	All Organisms → cellular organisms → Bacteria → Acidobacteria	535	Open in IMG/M
3300031753\|Ga0307477_10042183	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3135	Open in IMG/M
3300031754\|Ga0307475_10869360	Not Available	713	Open in IMG/M
3300031823\|Ga0307478_11630451	Not Available	532	Open in IMG/M
3300031823\|Ga0307478_11707800	All Organisms → cellular organisms → Bacteria → Acidobacteria	519	Open in IMG/M
3300031912\|Ga0306921_12264418	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	571	Open in IMG/M
3300031945\|Ga0310913_10442946	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	922	Open in IMG/M
3300032205\|Ga0307472_101487132	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	661	Open in IMG/M
3300032515\|Ga0348332_13617870	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Luteimonas → Luteimonas gilva	821	Open in IMG/M
3300032770\|Ga0335085_11030375	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	887	Open in IMG/M
3300032828\|Ga0335080_10245335	All Organisms → cellular organisms → Bacteria → Acidobacteria	1958	Open in IMG/M
3300032828\|Ga0335080_10414526	Not Available	1443	Open in IMG/M
3300032892\|Ga0335081_12071608	Not Available	604	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.90%
Host-Associated	Host-Associated	4.10%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	79.51%
Aquatic	Environmental → Aquatic	16.39%
Plants	Host-Associated → Plants	4.10%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	69.67%
Freshwater	Environmental → Aquatic → Freshwater	14.75%
Peat	Environmental → Terrestrial → Peat	9.02%
Sediment	Environmental → Aquatic → Sediment	1.64%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.64%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.64%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.82%
Peat Moss	Host-Associated → Plants → Peat Moss	0.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	49.18%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	11.48%
Loam	Environmental → Terrestrial → Soil → Loam	10.66%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	9.84%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	9.02%
Sediment	Environmental → Aquatic → Freshwater → Sediment	3.28%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.64%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.64%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.64%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.82%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified	0.82%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	22.95%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.13%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	9.02%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	7.38%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	7.38%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.38%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	3.28%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.28%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.28%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	2.46%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	2.46%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.64%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.64%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.64%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.64%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.82%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.82%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified	0.82%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	13.93%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.38%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	7.38%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	4.92%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	4.92%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	4.10%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	4.10%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	4.10%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	3.28%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	3.28%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.28%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.28%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.28%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.28%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.28%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	2.46%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.46%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.46%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	2.46%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.64%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.64%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	1.64%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	1.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.82%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.82%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.82%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.82%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.82%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.82%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.82%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.82%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.82%
Host-Associated	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated	0.82%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2199352024	Bare-fallow DEEP SOIL	Environmental	Open in IMG/M
3300001356	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007	Environmental	Open in IMG/M
3300001416	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 shallow-072012	Environmental	Open in IMG/M
3300003693	Avena fatua rhizosphere microbial communities - H2_Rhizo_Litter_49 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300009500	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG	Host-Associated	Open in IMG/M
3300009518	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150	Environmental	Open in IMG/M
3300009524	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300017999	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_10_MG	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018030	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_100	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300019786	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (PacBio error correction)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021858	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2015 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021861	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2016 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300024295	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 1-5	Environmental	Open in IMG/M
3300025442	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_100 (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026920	Forest soil microbial communities from Willamette National Forest, Oregon, USA, amended with Nitrogen - NN397 (SPAdes)	Environmental	Open in IMG/M
3300027080	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF009 (SPAdes)	Environmental	Open in IMG/M
3300027168	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF037 (SPAdes)	Environmental	Open in IMG/M
3300027559	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O3 (SPAdes)	Environmental	Open in IMG/M
3300027625	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG (SPAdes)	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027986	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300028798	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_2	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300029907	I_Bog_N1 coassembly	Environmental	Open in IMG/M
3300029911	III_Bog_N2 coassembly	Environmental	Open in IMG/M
3300029922	III_Fen_E1 coassembly	Environmental	Open in IMG/M
3300029945	I_Bog_N2 coassembly	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030044	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_E1_2	Environmental	Open in IMG/M
3300030509	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_2	Environmental	Open in IMG/M
3300030991	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031241	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG	Host-Associated	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
deeps_01246180	2199352024	Soil	MVSLVLIESIRKWFGVLSGKTEARVKESPYVMTRLAEERG
JGI12269J14319_100278474	3300001356	Peatlands Soil	MVALVLIESIRQWMGVLSGTRDARVKETPFVMTRLAEGEV*
JGI20176J14865_1031861	3300001416	Arctic Peat Soil	MVALVLIESVRQWIGVLSGREEARVKEAPFVMTRLAEERG*
Ga0032354_11026611	3300003693	Avena Fatua Rhizosphere	AILVVMVSLVLIESARHWISILSGRSEARVTESPFVPTRLAEDRA*
Ga0062384_1001768013	3300004082	Bog Forest Soil	LVFMVTLVLIESTRQWIRVLTGGEAARVKETPFVMTRLAEEQG*
Ga0062389_1041827703	3300004092	Bog Forest Soil	MVTLVLIESTRQWIRVLTGGEAARVKETPFVMTRLAEEQG*
Ga0062388_1002082691	3300004635	Bog Forest Soil	VLVAMVALVLIESVRQWVGVLSGKKEARAKEAPFVTTRLAKEQA*
Ga0062388_1012197671	3300004635	Bog Forest Soil	TGALVVMVALVLVESGRQWWGILSGTREARVKESPFVRTRLVEEQG*
Ga0066684_104290261	3300005179	Soil	LDAALTAILVIMVALVLIESVRQWVGVLSGREEARVKEAPFVMTRLAEERG*
Ga0066675_107324691	3300005187	Soil	VMVTVIIFESGRQWLGILNGSRAAQLKESPFVVTRLAEERA*
Ga0070713_1000114657	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	AVVTALLVGMVTLLLIESMRQWLGVLSGRRQALLKEAPFVMTHLAEERV*
Ga0070707_1012392061	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	TAVLVVMVALVLIESVRQWVAVLSGREEARVKEAPFVMTRLAEEQG*
Ga0073909_104657891	3300005526	Surface Soil	LVVMVALVLIESVRQWTGVLTGREDARVKETPFVMTRLAEERG*
Ga0066654_107997761	3300005587	Soil	LDAAVTGVLIVMVGLILVESLRQWFGILSGRKEAQTKESPFVVTRMAEERV*
Ga0070762_107987553	3300005602	Soil	ALVLIESVRQWIGVLSGREYVRVKESPFVQTRLAEERG*
Ga0070763_101123681	3300005610	Soil	VVMVTLVLVESARQWTGILRGTRAAPVKESPFVKTRLLEERG*
Ga0070763_103469821	3300005610	Soil	NRLDAALTAVLVVMVALVLIESVRQWIAVLSGRDEARVRETPFVMTRLAEERG*
Ga0066696_104534551	3300006032	Soil	ALVLIESVRQWVGVLSGREEARVKEAPFVMTRLAEERG*
Ga0075029_1000159526	3300006052	Watersheds	LLLVMVALVLFESARQWVGVISGSKEARVKEAPFVMTRLAEERA*
Ga0075014_1004421511	3300006174	Watersheds	LVLFESARQWLGVLSGRKEARVKETPFVMTRLSEERA*
Ga0116229_111367971	3300009500	Host-Associated	GILVVMVTLVLIESMRQWIGILSGAREGRVKESPFVRTRFAEERG*
Ga0116128_11139041	3300009518	Peatland	TLVLVESARQWIGILTGAREERVKESAFVRTRLAEEEG*
Ga0116128_11349673	3300009518	Peatland	LDAAVTAVLVVMVALVLIESVRQWISILSGREEARVKEVPFVMTRLAEDRG*
Ga0116225_10290365	3300009524	Peatlands Soil	VVMVALVLIESVRQWIAVLSGREEARVKEAPFVMTRLADERG*
Ga0116225_14752061	3300009524	Peatlands Soil	ILVVMVTLVLVESGRQWLGILSGAKEVRVKESPFVRTRFVEEQG*
Ga0126373_113828043	3300010048	Tropical Forest Soil	GLVVMVSLVLIESARQWVGILSGRKPARVKEVPFVMTRLAEERL*
Ga0126373_114746973	3300010048	Tropical Forest Soil	VLVESARQWIGILSGRKEARVKEVPFVMTRLAEERL*
Ga0126378_106826041	3300010361	Tropical Forest Soil	NNRLDAAGTATLLLMVAVVLGESLRHWIHILTGREEARLKEAPFVMTRLAEERI*
Ga0126379_138726743	3300010366	Tropical Forest Soil	IDAAVTAALLGMVALVLIESARQWVSVLTGRKEARVKETPFVMTRLTEERA*
Ga0136449_1037779583	3300010379	Peatlands Soil	AVTAVLVVMVAMVLIESIRQWMGVLSGTRDGRVKEAPFVMTRLAEGEV*
Ga0137382_112986253	3300012200	Vadose Zone Soil	NRLDAAVTGILIAMVTLLLIESVRRWLVVLGGEHDLRSTESPFVATRLAEEQG*
Ga0137365_112802112	3300012201	Vadose Zone Soil	LILIESARQWLGILSGKREAQVKESPFVVTRLVEERG*
Ga0137399_109186933	3300012203	Vadose Zone Soil	LVMMVTLVLVESVRQWWGILSGAREARVKESPFVRTRLAEEQG*
Ga0137379_113014241	3300012209	Vadose Zone Soil	AVVTAVLVVMVALVLIESVRQWAGVLSGREDARVKESPFVMTRLAEERG*
Ga0150985_1090150861	3300012212	Avena Fatua Rhizosphere	RLDAVVTGILIVMVALILVESVRQWFGILSGKKEAQTKESPFVVTRLAEERL*
Ga0137386_104454001	3300012351	Vadose Zone Soil	MVTLILIESARQWLGILSGKREAQVKESPFVVTRLVEERG*
Ga0137390_111469551	3300012363	Vadose Zone Soil	RLDAVVTAVLVVMVALVLIESVRQWVAVLSGREEARVKEAPFVMTRLAEEQG*
Ga0137398_101021541	3300012683	Vadose Zone Soil	NRLDAMVTGLLVLMVTLVLVESLRQWMGILSGTREARVKESPFVRTRLAEEQG*
Ga0137416_117229392	3300012927	Vadose Zone Soil	VVTGVLVVMVALVLLESSRQWLEILSGKKELRVSESPFVMTQLAEEGQG*
Ga0182018_102998241	3300014489	Palsa	TLVLVESGRQWMGVLSGAKEARVKESPFVRTRLVEEQG*
Ga0132255_1039088683	3300015374	Arabidopsis Rhizosphere	VALVLIESVRQWAGVLTGREDARVKETPFVMTRLAEERG*
Ga0182041_115979203	3300016294	Soil	LLLVMVALVLIESARQWIGVLTGRKEARVKETPFKMTRLAEERA
Ga0187847_105839111	3300017948	Peatland	LTAVLVVMVALVLIESVRQWIAVLSGREEARVKESPFVMTRLAEERG
Ga0187847_108478921	3300017948	Peatland	LVESARQWMGILSGAREARVKESPFVRTRFAEEQG
Ga0187817_1000021219	3300017955	Freshwater Sediment	MVALVLMESVRGWIGVLSGRKEARLKETPFVMTHLLEEQA
Ga0187783_100139571	3300017970	Tropical Peatland	GALLLMVAVVLVESLRHWIHILTGREEARLKEAPFVMTRLAEERI
Ga0187782_114787571	3300017975	Tropical Peatland	MVAVVLVESLRHWIHILTGREATRLKEAPFVMTRLAEERI
Ga0187767_102022653	3300017999	Tropical Peatland	VTLVLIESIRGWVGVISGRREARLQETPFVMTRLAEERA
Ga0187805_101683163	3300018007	Freshwater Sediment	LIESLRQWISILRGWEVAPVKEAPFVLTRLTEERA
Ga0187869_105785183	3300018030	Peatland	MVTLVLVESVRQWIGILSGAREARVKEAPFVRTRLVEEQG
Ga0187887_101821984	3300018043	Peatland	LVLMVALILIESVRQWIGVLSGREEARVKEVPFVMTRLAEERG
Ga0187784_100157691	3300018062	Tropical Peatland	ATLLLMVAVVLVESLRHWIHILTGREEARLKEAPFVMTRLAEERI
Ga0187784_103737871	3300018062	Tropical Peatland	TATLLLMVAVVLVESLRHWIHILTGREQARLKEAPFVMTRLAEERM
Ga0182025_10072621	3300019786	Permafrost	VLVESLRQWMGGILNGAKEARVKESPFVRTRLVEEQG
Ga0182025_10338301	3300019786	Permafrost	LQQSIGCVDAAVTGVLVVMVTLVLVESARQWMGILSGTREARVKESPFVRTRLVEEQG
Ga0210407_106324801	3300020579	Soil	VALVLIESVRQWIAVLSGTQEVRVKEVPFVMTRLVEERP
Ga0210399_110505651	3300020581	Soil	VTLVLVESGRQWWGILSGVKEARVKESPFVRTRLVEEQG
Ga0210401_101833735	3300020583	Soil	DAAVTGVLVAMVTLVLFESVRQWLGILLGTKEVRLKESPFVRTRLAMEEQG
Ga0210406_110438513	3300021168	Soil	TLVVVESGRQWWGILSGVKEARVKESPFVRTRLVEEQG
Ga0210400_100778736	3300021170	Soil	VESGRQWWGILSGTREAPVKEAPFVRTRLVEERLVEERG
Ga0210405_103284141	3300021171	Soil	MVTLVLVESGRQWWGILSGTREAPVKEAPFVRTRLVEERLVEERG
Ga0210385_114440551	3300021402	Soil	VMVALVLVESARQWIAVLAGRKEARVKESPFVITRLAEERA
Ga0210383_107310191	3300021407	Soil	AVLVVMVTLVLIESVRQLNLVLSGREPASVKESPFVKTRLAEDRL
Ga0210394_102072133	3300021420	Soil	IVMVTLVLIESARQWWGILSGASEVRVKESPFVRTRLAEERG
Ga0210384_107757203	3300021432	Soil	LVLLESVRQWIGVLSGREEARLKEAPFVMTRLAEERG
Ga0210391_115402771	3300021433	Soil	VMVTLVLVESVRQWMGILSGAREAQMKEAPFVRTRLAEERG
Ga0210390_111238573	3300021474	Soil	AALTAVLVVMVALVLIESVRQWIGVLSGREEARVKETPFVMTRLAEERG
Ga0210392_105473211	3300021475	Soil	ILIVMVTLVLIESARQWWGILSGASEVRVKESPFVRTRLAEERG
Ga0210410_117588291	3300021479	Soil	VAMVTLVLIESVRQWIGVLSGREDARVKESPFVPTRLAGEQA
Ga0213852_10076832	3300021858	Watersheds	VTTVLVVMVALVLIESGRQWLGVLRGSKDARVKEAPFVMTQLAEERG
Ga0213852_12936943	3300021858	Watersheds	VIMVAMVLIESARKWIGVLSGREEARVKESPFVMTRLAEEEA
Ga0213853_104938461	3300021861	Watersheds	VMVTLVLIESARQWIGVLTGRRESRVRETPFVTTRLSEERA
Ga0213853_115246493	3300021861	Watersheds	VLIESARQWIGVLTGRRESRVRETPFVMTRLSEERA
Ga0224556_10511584	3300024295	Soil	LVESLRQWWGILSGANEARVKESPFVRTRLVGERG
Ga0208034_10851543	3300025442	Peatland	TGVLVVMVTLVLVESARQWVGILTGAREERVKESPFVRTRFAQEQG
Ga0207646_109702821	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	TAVLVVMVALVLIESVRQWVAVLSGREEARVKEAPFVMTRLAEEQG
Ga0207665_109915762	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MVTALLLVMVALVLIESARQWIGVISGRKEARVKETPFVMTRLGEDHA
Ga0208575_10180951	3300026920	Soil	VVIESVRVWVGVLTGKREARIKETPFVATRLVMEEQG
Ga0208237_10675003	3300027080	Forest Soil	VLVESGRQWWGILSGTREAPVKEAPFVRTRLVEERLVEERG
Ga0208239_10221681	3300027168	Forest Soil	DASLTAVLVVMVALVLIESVRQWIGVLSGREEARVKEAPFVMTRMAEERG
Ga0209222_10063653	3300027559	Forest Soil	AVTGILVLMVTLVLLESGRQWLGILRGTREARTKESPFVRTRLVEERG
Ga0208044_10614421	3300027625	Peatlands Soil	VVMVALVLIESVRQWIAVLSGREEARVKEAPFVMTRLADERG
Ga0209448_102439703	3300027783	Bog Forest Soil	LVVMVALVLIESVRQWIAVLSGTDEVRVKEAPFVMTRLAEERG
Ga0209517_101208883	3300027854	Peatlands Soil	MVTLVLVESARQWMGILSGAREARVMESPFVRTRLAEERG
Ga0209166_100669071	3300027857	Surface Soil	MGTLVLVESVRQWVGVLTGSREARIIETPFVMTRLVEEKG
Ga0209701_103075931	3300027862	Vadose Zone Soil	MVSLVVVESARVWIGVLTGRREARVKETPFVATRLVMEEQ
Ga0209169_106052832	3300027879	Soil	DAAMTGILVVMVTLVLLESARQWWGILRGTREARMKESPFVRTRMVEDRG
Ga0209275_102437623	3300027884	Soil	VLLESSRQWWGILRGTREAPVKEAPFVRTRLVEERLVEERG
Ga0209168_102997873	3300027986	Surface Soil	LVVMVALVLIESVRQWIAVLNGTEEVRVKEVPFVMTRLAEERP
Ga0307504_103694553	3300028792	Soil	MVALVLIESARQWLGVLSGRKEARIKETPFVMTRLTEERA
Ga0302222_103345363	3300028798	Palsa	GTLVVMVTLVLVESGRQWMGVLSGAKEARVKESPFVRTRLVEEQG
Ga0222749_103955333	3300029636	Soil	VAMVTLVLFESVRQWLGILLGTTEVRLKESPFVRTRLAMEEQG
Ga0311329_103932673	3300029907	Bog	MVKLVLAESLRQWWGVVSGAREARVKESPFVKTRLAEERG
Ga0311361_104879451	3300029911	Bog	VTLVLVESLRQWWGILSGANEARVKESPFVRTRLVGERG
Ga0311363_109539404	3300029922	Fen	ILVVMVTLVLVESLRQWWGILSGANEARVKESPFVRTRLVGERG
Ga0311330_102471341	3300029945	Bog	DAAVTGILVLMVTLVLAESLRQWWGVVSGAREARVKESPFVKTRLAEERG
Ga0311371_124383322	3300029951	Palsa	VTTILVLMVALVLIESVRQWMAVLSGKSESRVKESPFVMTRLAEERV
Ga0311339_107809753	3300029999	Palsa	VMVTLILIESGRQWLGILRGTREARVKESPFVRTRLVEERG
Ga0311338_118079121	3300030007	Palsa	VTAILVVMVALVLVESVRQWIGVLSGREEARVKESPFVMTRLAEERA
Ga0302281_103549811	3300030044	Fen	VLILMVTLVLVESLRQWYGILRGTGETRVKESPFVRTQLAEERG
Ga0302183_102200033	3300030509	Palsa	LVLVESLRQWATILSGAREARVKEAPFVKTRLAEGRG
Ga0073994_123813001	3300030991	Soil	LDAVVTGVLIVMVTLILVESARQWLGILNGKKEARVKESPFVVTRLVEERG
Ga0265760_102720291	3300031090	Soil	IMVTLVLVESVRQWVGILSGAREARVKESPFVRTRFAEERA
Ga0307498_101556841	3300031170	Soil	AAVTAILVLMVALVLIESVRQWAGVLTGREDARVKETPFVMTRLAEERG
Ga0265325_100783312	3300031241	Rhizosphere	VVTGVLVAMVTLVLIESVRQWIGVLRGREDARVKESPFVATRLAEEQG
Ga0310686_1041303122	3300031708	Soil	AVTGVLVVMVALVLVESVRQWFGILRGTREVRVKESPFVRTRLVEEQG
Ga0307476_101499822	3300031715	Hardwood Forest Soil	ATAILVVMVALVLIESVRQWIGVLSGREEARVKESPFVMTRLAEERG
Ga0307474_104820821	3300031718	Hardwood Forest Soil	ALLVVMVALVLIESVRQWMAVLSGREESRVKEAPFVMTRLAEERG
Ga0307474_112357963	3300031718	Hardwood Forest Soil	VTGILVGMVTLVLVESGRQWLGILSGAKEARVKESPFVRTRFVEEQG
Ga0307474_114759693	3300031718	Hardwood Forest Soil	VMVALVLTESVRQWIGVLSGREEARVKESPFVMTRLAEERG
Ga0307477_100421831	3300031753	Hardwood Forest Soil	VTLVLFESVRQWLGILRGTKEVRLKESPFVRTRLAMEEQG
Ga0307475_108693601	3300031754	Hardwood Forest Soil	VVMVTLVLVESLRQWIGILSGAKETRVKESPFVRTRFVGEQG
Ga0307478_116304513	3300031823	Hardwood Forest Soil	ILVVMVTLVLFESARQWLGILLGTKEARLKESPFVRTRLAMEEQR
Ga0307478_117078001	3300031823	Hardwood Forest Soil	VTAILVVMVALVLIESVRQWIGVLSGREEARVKESPFVMTRLVEERG
Ga0306921_122644183	3300031912	Soil	ALVLIESARQWIGVLTGRKEARVKETPFRMTRLAEERA
Ga0310913_104429461	3300031945	Soil	MVALVLFESARQWIGVLSGRREAKTKESPLVMTRLAEDRA
Ga0307472_1014871321	3300032205	Hardwood Forest Soil	MVALVLIESVRQWAGVLSGREDACVKETPFVMTRLAEERG
Ga0348332_136178702	3300032515	Plant Litter	LVLVESVRQWFGILRGTREVRVKESPFVRTRLVEEQG
Ga0335085_110303753	3300032770	Soil	LIESARQWIGILTGRRQAIVREAPFTMTRLAEERA
Ga0335080_102453354	3300032828	Soil	LVVMVALVLLESGRQWLAILSGRKEARVKETPFVMTRLAEERG
Ga0335080_104145261	3300032828	Soil	GLLVMMVGLVLFESIRQWVGVLTGREEARVKEAPFVMTRLAGERA
Ga0335081_120716081	3300032892	Soil	LLVMVTLVLIESARHWIGIISGCKAASVKETPFVMTRLTEERA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F071523

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences