3300001161: Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_M2

Overview

Basic Information

• IMG/M Taxon OID: 3300001161
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0071004 | Gp0054540 | Ga0002415
• Sample Name: Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_M2
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 12321105
• Sequencing Scaffolds: 12
• Novel Protein Genes: 12
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	3
All Organisms → cellular organisms → Eukaryota → Opisthokonta	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Acidobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Forest Soil Microbial Communities From Multiple Locations In Canada And Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → solid layer → forest soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: El Dorado National Forest, Georgetown, California, USA
• Coordinates
  • Lat. (^o): 38.88
  • Long. (^o): -120.64
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002483	Metagenome / Metatranscriptome	555	Y
F004821	Metagenome / Metatranscriptome	422	Y
F005789	Metagenome / Metatranscriptome	390	Y
F009274	Metagenome / Metatranscriptome	320	Y
F037234	Metagenome / Metatranscriptome	168	Y
F057346	Metagenome / Metatranscriptome	136	Y
F069061	Metagenome / Metatranscriptome	124	Y
F085666	Metagenome / Metatranscriptome	111	Y
F090727	Metagenome / Metatranscriptome	108	Y
F093917	Metagenome / Metatranscriptome	106	N
F097761	Metagenome / Metatranscriptome	104	Y
F102119	Metagenome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI12135J13285_100017	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	11684
JGI12135J13285_100117	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	5120
JGI12135J13285_100129	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	4998
JGI12135J13285_100153	All Organisms → cellular organisms → Eukaryota → Opisthokonta	4617
JGI12135J13285_100258	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	3602
JGI12135J13285_100311	All Organisms → cellular organisms → Bacteria	3199
JGI12135J13285_100411	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2731
JGI12135J13285_100631	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1982
JGI12135J13285_100682	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	1865
JGI12135J13285_100770	All Organisms → cellular organisms → Bacteria	1695
JGI12135J13285_100866	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1494
JGI12135J13285_101705	All Organisms → cellular organisms → Bacteria → Acidobacteria	711

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI12135J13285_100017	JGI12135J13285_1000172	F005789	MEGTLMATVVALNSSPVNVLRSMRGPIIDARRAYPDVLHVEVRDSAGALWRLATQDAEWSPSDPASLVGRSVENAEIDEESGELRCKLSDGTVLDIRPGAGGSAENDPPNWELITPGGVVLEFGPGVRWQISSADATTSSRR*
JGI12135J13285_100117	JGI12135J13285_1001176	F102119	MDILRNIFGTLTSGVIRLLVSVGILAAAYFFIVKPVLHTTDNAIKNANKSFEKSFGTHGTDLTDISGTIEDVNRQVERQIRHSFHAAKKEGSPKRLVRCIQRSHGDVQKIQRCTVKF*
JGI12135J13285_100129	JGI12135J13285_1001296	F057346	MAAVERVGNWTPEGKAEVAALRRDYRELTPAQRAEQVFELSKFLSQVAEAGRQKRLG*
JGI12135J13285_100153	JGI12135J13285_1001533	F037234	MKKYLKLDPKPSDLTTVRIIKVRTGYRCKDIRRTVVS*
JGI12135J13285_100258	JGI12135J13285_1002582	F009274	MPFWIARRAAPAVWKRIPWKMVWAVVVWLGGKGRERIDDNLTKKEQDEFWRLLKKSKGRPTALPQRDRTRMKNIAGKAIRGS*
JGI12135J13285_100311	JGI12135J13285_1003113	F097761	LIPAGTEAWPAVFGGLIPILGLALIAYIIWKAVKDDGSDEKDE*
JGI12135J13285_100411	JGI12135J13285_1004114	F090727	MAGLETAVLDACAGASEWPAQIAAGIYAGVDFAIANPTVARALTIDAAVEADCMRRYERVIGRLAGFIRIKAPLAARLPGSTDEALVAGIVGLVGDHIRVGRLDRLAELRPELVLLTLLPYLGFSEAQRWSNQVAGARADEA*
JGI12135J13285_100631	JGI12135J13285_1006313	F085666	MGERASTLFPFGIAVVLPPAGLLLGLLNLQQEDREQGIRLILVSLLAAMVWVLLFVG*
JGI12135J13285_100682	JGI12135J13285_1006821	F004821	MSKRVQSTTFISRGRITGLVRDETPAGLGQNRTTRSANRESVQSAADEALFYRARLILGDALPRPNR*
JGI12135J13285_100770	JGI12135J13285_1007703	F069061	MACERAGTTVTAAIGYRQSMVFDFRYKSISGQWKSSGHRKGETRDAAFAALEAKNGPMPAGKYMSRPRDGRTKNWDLFTRP*
JGI12135J13285_100866	JGI12135J13285_1008663	F002483	MTSLFRRRRERVAPRSPSLRPPRPRPRAYYDVAGVPLDREMERLRALPVFAGGPLAARAPALKVRRARARPNRLGFAVPAEFRLSVTAYPGIRPGDVLETLLHELTHLHVGRAAEAHAWHGRTFRATLARAMGEAYGVAATRPSSTLHGVYAEAIERRVAA*
JGI12135J13285_101705	JGI12135J13285_1017051	F093917	MLDSVRKHVAVPEIPVKVLLSVGSLASFGWLLSHDLVHPIVIYALQLYLSL*