3300001143: Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M1

Overview

Basic Information

• IMG/M Taxon OID: 3300001143
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0071004 | Gp0055412 | Ga0002910
• Sample Name: Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M1
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 15453478
• Sequencing Scaffolds: 32
• Novel Protein Genes: 32
• Associated Families: 32

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4
All Organisms → cellular organisms → Bacteria	9
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6
All Organisms → cellular organisms → Bacteria → Acidobacteria	5
Not Available	4
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Forest Soil Microbial Communities From Multiple Locations In Canada And Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → land → forest soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Davy Crockett National Forest, Groveton, Texas, USA
• Coordinates
  • Lat. (^o): 31.11
  • Long. (^o): -95.15
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000299	Metagenome / Metatranscriptome	1341	Y
F000380	Metagenome / Metatranscriptome	1210	Y
F002851	Metagenome / Metatranscriptome	526	Y
F004615	Metagenome / Metatranscriptome	431	N
F005599	Metagenome / Metatranscriptome	395	Y
F006531	Metagenome / Metatranscriptome	371	Y
F006902	Metagenome / Metatranscriptome	362	Y
F007494	Metagenome / Metatranscriptome	350	Y
F009027	Metagenome / Metatranscriptome	324	N
F009999	Metagenome / Metatranscriptome	310	N
F011034	Metagenome / Metatranscriptome	296	Y
F011193	Metagenome / Metatranscriptome	294	Y
F015924	Metagenome	251	Y
F023941	Metagenome / Metatranscriptome	208	Y
F025548	Metagenome / Metatranscriptome	201	Y
F026495	Metagenome / Metatranscriptome	197	Y
F029122	Metagenome / Metatranscriptome	189	N
F029827	Metagenome / Metatranscriptome	187	N
F030179	Metagenome / Metatranscriptome	186	Y
F030823	Metagenome / Metatranscriptome	184	Y
F030852	Metagenome / Metatranscriptome	184	Y
F037452	Metagenome / Metatranscriptome	168	Y
F041479	Metagenome / Metatranscriptome	160	Y
F044087	Metagenome / Metatranscriptome	155	Y
F056831	Metagenome / Metatranscriptome	137	Y
F059929	Metagenome / Metatranscriptome	133	Y
F072803	Metagenome / Metatranscriptome	121	Y
F084667	Metagenome / Metatranscriptome	112	Y
F087829	Metagenome / Metatranscriptome	110	N
F089480	Metagenome / Metatranscriptome	109	Y
F089975	Metagenome	108	N
F099818	Metagenome / Metatranscriptome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI12687J13287_100031	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2600
JGI12687J13287_100088	All Organisms → cellular organisms → Bacteria	1960
JGI12687J13287_100090	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1955
JGI12687J13287_100138	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1783
JGI12687J13287_100173	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1660
JGI12687J13287_100520	All Organisms → cellular organisms → Bacteria	1144
JGI12687J13287_100543	All Organisms → cellular organisms → Bacteria	1120
JGI12687J13287_100677	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1000
JGI12687J13287_100905	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	874
JGI12687J13287_101173	All Organisms → cellular organisms → Bacteria	777
JGI12687J13287_101273	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	746
JGI12687J13287_101334	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	729
JGI12687J13287_101486	All Organisms → cellular organisms → Bacteria	699
JGI12687J13287_101510	All Organisms → cellular organisms → Bacteria	695
JGI12687J13287_101558	All Organisms → cellular organisms → Bacteria → Acidobacteria	685
JGI12687J13287_101593	All Organisms → cellular organisms → Bacteria	679
JGI12687J13287_101777	All Organisms → cellular organisms → Bacteria → Acidobacteria	650
JGI12687J13287_101802	All Organisms → cellular organisms → Bacteria → Acidobacteria	647
JGI12687J13287_101852	Not Available	641
JGI12687J13287_101941	All Organisms → cellular organisms → Bacteria → Acidobacteria	629
JGI12687J13287_102221	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	599
JGI12687J13287_102268	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	594
JGI12687J13287_102272	Not Available	594
JGI12687J13287_102459	All Organisms → cellular organisms → Bacteria	577
JGI12687J13287_102568	All Organisms → cellular organisms → Bacteria	568
JGI12687J13287_102675	Not Available	559
JGI12687J13287_102712	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	556
JGI12687J13287_102795	All Organisms → cellular organisms → Bacteria → Acidobacteria	550
JGI12687J13287_102814	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	549
JGI12687J13287_102953	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	541
JGI12687J13287_103026	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	536
JGI12687J13287_103237	Not Available	525

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI12687J13287_100031	JGI12687J13287_1000311	F037452	MESSFLIEVDNTSILRTGALHCYHYTLNRLPAPRLLLPCSGLERSDFVQ
JGI12687J13287_100088	JGI12687J13287_1000883	F026495	VFGVAAASRNTRFQAARYGLTWVGLAPTDRASFAWRLPSLDHLVGASEQ
JGI12687J13287_100090	JGI12687J13287_1000901	F011034	MEAKLPLSRRPELDCKPTALRTARQLDLVLDDVRFRAMTSTERRAVLSAMARLLLEASGAAATREVSDDNA*
JGI12687J13287_100138	JGI12687J13287_1001383	F006531	MLAFAHIPTGTTSNNGFDIDEVNGRFAEPVAPVTVIGADIETGRVTP*
JGI12687J13287_100173	JGI12687J13287_1001732	F029122	MLIRPAIDDTDPIRHRRPTPDGQFSGNIIDEAMRGQ
JGI12687J13287_100520	JGI12687J13287_1005201	F023941	DSPLEEDGFEPVWGFSCQVVFWVVVSSLFGAGKPFFVPSPAIRFAERAEGVKGPKR*
JGI12687J13287_100543	JGI12687J13287_1005431	F030852	MEDETIDKEEVWSAIRYLDPDEREKDKEVNTATIIATLALLIIVGGVWVLLWLRVRQP*
JGI12687J13287_100677	JGI12687J13287_1006772	F044087	MRAMVVEVVPELKEFIFEICGRPEQRVIQTLASNRTDEPFGERMRKGNAGDALDFCHLQNPQIGLPLMELIKRIVVGAEVLRHPELPAKGAVEHSTKCHTIDRAGMHAEANDPSRVLIHDDQDPVGPQRGRLAPEQIHTPETVFHVAEES*
JGI12687J13287_100905	JGI12687J13287_1009052	F087829	MRRLMSALCPTTTLKMEPPSAQSPFARCWHYHQGDVNRLLRGHYSPVMALTDSFADPTRSPLLRPWPRSRSLCRLRPAPAAGGTFPTLSLRILPCVPGPLSRRSRGVHLPVSSSTSSAFPRTLSRSASRVSPSKRFHDGSLFRDCSHFVMFRPSGLLASPIVPTAAAYRRRAAEASTSELNMLRCLRMHRIC*
JGI12687J13287_101173	JGI12687J13287_1011731	F030179	MITAGVSRVASGLLCVHAIAITPAGPMQLVRSSLSIVSGLPCVTVRSAPAIVVSGPAQRSLTLWPARSPSRLATLYIESSDSFVASAAVSIATGWSEPVPGRELHPLKSSAFHGALLRQPSASSVRVR
JGI12687J13287_101273	JGI12687J13287_1012733	F099818	MPVERRGQAIAIWLGSTGAGSNRHQEEPDVQWKAAAFVRWHEPDDARVSSPDL*EARGEIPRAYSA
JGI12687J13287_101334	JGI12687J13287_1013342	F089480	MCDWYAKRQRISRGKEALMARIIEFYVPAKFQRRKPLIAQSQKGKVVVFCAEAKKPA*
JGI12687J13287_101486	JGI12687J13287_1014862	F005599	AAMGGRAIQRAVTRVKSEQAPKVLMRMPTRHHFGEGRANGKVIDRRTRSIRRGNGHGTLER*
JGI12687J13287_101510	JGI12687J13287_1015101	F025548	TGLTSRLQCAGLNRLEVEDESSLRERSSDPLGLESCAGYREVLSEA*
JGI12687J13287_101558	JGI12687J13287_1015582	F089975	MPVKIVATITFCQLLLRNAREVIVEQLELSGLKIREGSGMAPVDATVRADVVDLMARILMAVFQAEGGRIDDRASLQSQDQTGASSAQGDRLLTTIERETSALQPGESAPSV*
JGI12687J13287_101593	JGI12687J13287_1015931	F009027	IGWIRVVLPDGRHRWVPQKATDLNVSACEARPNRDLPLVSVRTLIPLAEYVRARLSALGERFDETSGHTADPAVRAGIAGSTADLGAEIVADDDADNTTTAGEAGGTATPVNAGRSRRRRFDRGASR*
JGI12687J13287_101777	JGI12687J13287_1017771	F004615	MKKICLVLCLMCMVSSLALAQGKTNVQWKCDKPSGQQSIPVGDKPGHAYAIEQINCTAIKGDIGGNKMKSGIGTEFLDVRGDQVTGHGEFIESMENGDKNLYKYEFSGTTKDGAFESGTNKWSLIGGGGKMKGGKANGTCKAKANPDQSTAFDCMGTYTPPTT*
JGI12687J13287_101802	JGI12687J13287_1018021	F056831	MGQMDFVGHFRDLLITLEVARADATLVTENFGDFERWKRLLASTGKTLKLFNPM*
JGI12687J13287_101852	JGI12687J13287_1018521	F059929	MESSILSEVDDTSILRTGLPRRYACPLLATGLSPRAPRSGLERSDFVLWH
JGI12687J13287_101941	JGI12687J13287_1019411	F000299	MKASNVSGGSMENVERTAGSMRPIDRYDIGHVQEVIRQAHDELRQLMQQRAEIMKRIGTVKQTISGLANLFGDGVLNDELMELVDRKSNGRQPGFTKACRMILMESGRAMNSRDICDYFQEKLPDLLARHKDPMASVTTVLNRLVEYGEAEAVVSNGRRAWRWVADV
JGI12687J13287_102221	JGI12687J13287_1022211	F084667	QKWREVLEGSNRGLKKKAVVAIGRQLIVDIWRLQTGRISAQELGLIMIEA*
JGI12687J13287_102268	JGI12687J13287_1022681	F000380	MPVQPQEQETLNVKLVHFTKQNSPDEPVQLAFSVVDEQGKEEIITGEIPYSYDLFRLCQENGWLNIRRGVSSIRESKAQRRIMSA*
JGI12687J13287_102272	JGI12687J13287_1022721	F030823	MEHKTIGKEVVGTKRVLTVIAGISAIVSVIAAVIRGIAGSQIHDYSHPLIGFLGVCMILGLFVALLAFNTRLQVAFDEAENRSLAEDAEG*
JGI12687J13287_102459	JGI12687J13287_1024591	F041479	LLSMSLSPCCRFHPAEVNSRIGQFSAGHSAFALRLQARPSGILIFEATMRS
JGI12687J13287_102568	JGI12687J13287_1025682	F011193	NKVVFIVFKGRALMREVRIASQRSGGFLVDGLVGGENVITTAPQNLKDGQKIKIKGQS*
JGI12687J13287_102675	JGI12687J13287_1026751	F009999	GIGASAMKVELPGESKPFADIEEGECFAFTRKQVTSVCMKVEWLSSASVAVLWSASDDWTVPHLIAPTELAGSILHSLPSAVFVASSDAKDVRADRTRHEYAPGFLIKTPXGQSLIAVKGLQREHGISVIDVATGKASGIETDNLTFFTSWRIVTKVLDKYETVCSFPSYNENKRSVGQTT*
JGI12687J13287_102712	JGI12687J13287_1027121	F006902	MLRINCEAVMWKITTRGFTLEEMLIMAAMNLLTSADTAAKREKRASPK*
JGI12687J13287_102795	JGI12687J13287_1027952	F007494	MKQSFRVSLGAVVLALATLAAVIFAILNFDQRARFESPDDAV
JGI12687J13287_102814	JGI12687J13287_1028141	F015924	SMAYYLQDCGRADLQIVPLYDTHYAPRDGDLIVLEPSRRFFETQRFFDALGNSGMPHSEIRVGPVLASTIYLFDPSVPAAKGGKEELTLTQLRGAPTRFDNNDQEPASTNTNMFGLSEITRRLLP*
JGI12687J13287_102953	JGI12687J13287_1029531	F029827	MDAVAFVTGGQQEDAIPQGFETRWRRTVRGREIEYQSIGPYAGFGQANDPHRDSRHVRIGVTITSPKKCVFKTVVTTEYSK
JGI12687J13287_103026	JGI12687J13287_1030262	F072803	MATAPKFRIDVDIHNLLMNTAQAPAKPALVKGKRLPDPVFPRF
JGI12687J13287_103237	JGI12687J13287_1032371	F002851	MKSYIETAALITGCGSAAFWFASAMCRLRGINPGKDELDKVTELSNRLQRMSTWNFWAAGLMGV