Metagenome / Metatranscriptome Family F084667

Basic Information
Family ID	F084667
Family Type	Metagenome / Metatranscriptome
Number of Sequences	112
Average Sequence Length	45 residues
Representative Sequence	NPALKKKAVVAIGRQLIVDLWRLQTGRVTAQELNLVMVGA
Number of Associated Samples	96
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.89 %
% of genes near scaffold ends (potentially truncated)	94.64 %
% of genes from short scaffolds (< 2000 bps)	93.75 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.58

Most Common Taxonomy
Group	Bacteria (94.643 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (31.250 % of family members)
Environment Ontology (ENVO)	Unclassified (33.036 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (62.500 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 33.82% β-sheet: 0.00% Coil/Unstructured: 66.18%
Feature Viewer

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Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF02371	Transposase_20	1.79
PF00218	IGPS	0.89
PF01863	YgjP-like	0.89
PF00701	DHDPS	0.89
PF12728	HTH_17	0.89
PF00216	Bac_DNA_binding	0.89
PF13407	Peripla_BP_4	0.89
PF01022	HTH_5	0.89
PF13424	TPR_12	0.89
PF02910	Succ_DH_flav_C	0.89
PF00342	PGI	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG0329	4-hydroxy-tetrahydrodipicolinate synthase/N-acetylneuraminate lyase	Cell wall/membrane/envelope biogenesis [M]	1.79
COG3547	Transposase	Mobilome: prophages, transposons [X]	1.79
COG0134	Indole-3-glycerol phosphate synthase	Amino acid transport and metabolism [E]	0.89
COG0166	Glucose-6-phosphate isomerase	Carbohydrate transport and metabolism [G]	0.89
COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	Replication, recombination and repair [L]	0.89
COG1451	UTP pyrophosphatase, metal-dependent hydrolase family	General function prediction only [R]	0.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	94.64 %
Unclassified	root	N/A	5.36 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	94.64 %
Unclassified	root	N/A	5.36 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	94.64 %
Unclassified	root	N/A	5.36 %

Name	Rank	Taxonomy	Distribution
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	76.79 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	11.61 %
Unclassified	root	N/A	5.36 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.89 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	76.79 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	10.71 %
Unclassified	root	N/A	5.36 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.89 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.89 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	76.79 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	8.93 %
Unclassified	root	N/A	5.36 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.89 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.89 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	76.79 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	8.93 %
Unclassified	root	N/A	5.36 %
Pirellulales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales	0.89 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.89 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	76.79 %
Verrucomicrobia subdivision 3	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3	7.14 %
Unclassified	root	N/A	5.36 %
Verrucomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	1.79 %
Pirellulaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae	0.89 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.89 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	76.79 %
Pedosphaera	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera	7.14 %
Unclassified	root	N/A	5.36 %
Verrucomicrobium	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium	1.79 %
Pirellulaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae	0.89 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.89 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	76.79 %
Pedosphaera parvula	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	7.14 %
Unclassified	root	N/A	5.36 %
unclassified Verrucomicrobium	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium → unclassified Verrucomicrobium	1.79 %
Pirellulaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae	0.89 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.89 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	76.79 %
Pedosphaera parvula	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	7.14 %
Unclassified	root	N/A	5.36 %
Verrucomicrobium sp. BvORR034	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium → unclassified Verrucomicrobium → Verrucomicrobium sp. BvORR034	1.79 %
Pirellulaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae	0.89 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.89 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.89 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459006\|GBPF9FW01D0ITX	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	567	Open in IMG/M
2170459009\|GA8DASG02JP6RZ	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	543	Open in IMG/M
2170459023\|GZGNO2B01EI79X	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	507	Open in IMG/M
2189573003\|GZIR7W401BS6JO	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	537	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10098631	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	617	Open in IMG/M
3300001082\|JGI12664J13189_1009428	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	598	Open in IMG/M
3300001116\|JGI12627J13344_104672	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	536	Open in IMG/M
3300001143\|JGI12687J13287_102221	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	599	Open in IMG/M
3300001162\|JGI12714J13572_1009428	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	522	Open in IMG/M
3300001867\|JGI12627J18819_10388878	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	566	Open in IMG/M
3300002917\|JGI25616J43925_10007431	All Organisms → cellular organisms → Bacteria	4753	Open in IMG/M
3300005162\|Ga0066814_10109555	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	525	Open in IMG/M
3300005164\|Ga0066815_10053343	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	673	Open in IMG/M
3300005764\|Ga0066903_108774105	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	513	Open in IMG/M
3300005993\|Ga0080027_10095323	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1111	Open in IMG/M
3300006172\|Ga0075018_10644202	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium → unclassified Verrucomicrobium → Verrucomicrobium sp. BvORR034	568	Open in IMG/M
3300006176\|Ga0070765_100576058	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1061	Open in IMG/M
3300006954\|Ga0079219_10938781	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	706	Open in IMG/M
3300006954\|Ga0079219_10963033	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium → unclassified Verrucomicrobium → Verrucomicrobium sp. BvORR034	701	Open in IMG/M
3300009792\|Ga0126374_11249908	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	597	Open in IMG/M
3300010154\|Ga0127503_10326130	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	538	Open in IMG/M
3300010159\|Ga0099796_10294782	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	686	Open in IMG/M
3300010162\|Ga0131853_10944106	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	672	Open in IMG/M
3300010321\|Ga0134067_10140206	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	856	Open in IMG/M
3300010341\|Ga0074045_10058238	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae	2767	Open in IMG/M
3300010358\|Ga0126370_11026652	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	755	Open in IMG/M
3300010373\|Ga0134128_12527590	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	566	Open in IMG/M
3300010376\|Ga0126381_100196970	All Organisms → cellular organisms → Bacteria	2690	Open in IMG/M
3300010376\|Ga0126381_103203634	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	647	Open in IMG/M
3300010376\|Ga0126381_104952180	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	511	Open in IMG/M
3300010398\|Ga0126383_13623618	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	504	Open in IMG/M
3300011120\|Ga0150983_12532257	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	548	Open in IMG/M
3300011392\|Ga0153987_1016378	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	763	Open in IMG/M
3300012059\|Ga0153991_1069556	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	546	Open in IMG/M
3300012169\|Ga0153990_1061837	Not Available	848	Open in IMG/M
3300012582\|Ga0137358_10378242	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	958	Open in IMG/M
3300012923\|Ga0137359_10848048	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	790	Open in IMG/M
3300012923\|Ga0137359_11357316	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	599	Open in IMG/M
3300012948\|Ga0126375_11683832	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	549	Open in IMG/M
3300013025\|Ga0157367_1121287	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1083	Open in IMG/M
3300016294\|Ga0182041_11376498	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	647	Open in IMG/M
3300016319\|Ga0182033_11297905	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	654	Open in IMG/M
3300016319\|Ga0182033_11681177	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	575	Open in IMG/M
3300016371\|Ga0182034_11303144	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	633	Open in IMG/M
3300016422\|Ga0182039_11221473	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	679	Open in IMG/M
3300020581\|Ga0210399_11428675	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	539	Open in IMG/M
3300021178\|Ga0210408_11259260	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	562	Open in IMG/M
3300021180\|Ga0210396_11220857	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	629	Open in IMG/M
3300021180\|Ga0210396_11324008	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	598	Open in IMG/M
3300021180\|Ga0210396_11551091	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	543	Open in IMG/M
3300021181\|Ga0210388_10094170	All Organisms → cellular organisms → Bacteria	2558	Open in IMG/M
3300021181\|Ga0210388_11036647	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	702	Open in IMG/M
3300021377\|Ga0213874_10325479	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	584	Open in IMG/M
3300021401\|Ga0210393_10988375	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	681	Open in IMG/M
3300021401\|Ga0210393_11131473	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	631	Open in IMG/M
3300021403\|Ga0210397_11197295	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	590	Open in IMG/M
3300021403\|Ga0210397_11209147	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	587	Open in IMG/M
3300021406\|Ga0210386_11679716	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	525	Open in IMG/M
3300021477\|Ga0210398_11159388	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	612	Open in IMG/M
3300022726\|Ga0242654_10363344	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	547	Open in IMG/M
3300025939\|Ga0207665_11500594	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	536	Open in IMG/M
3300026342\|Ga0209057_1157067	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	700	Open in IMG/M
3300026498\|Ga0257156_1094159	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	623	Open in IMG/M
3300027070\|Ga0208365_1045416	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	588	Open in IMG/M
3300027109\|Ga0208603_1055633	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	598	Open in IMG/M
3300027660\|Ga0209736_1108596	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	751	Open in IMG/M
3300027669\|Ga0208981_1100648	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	737	Open in IMG/M
3300027669\|Ga0208981_1140358	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	615	Open in IMG/M
3300027727\|Ga0209328_10023160	All Organisms → cellular organisms → Bacteria → Proteobacteria	1904	Open in IMG/M
3300027727\|Ga0209328_10252356	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	526	Open in IMG/M
3300027738\|Ga0208989_10203930	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	654	Open in IMG/M
3300027879\|Ga0209169_10565838	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	595	Open in IMG/M
3300027894\|Ga0209068_10679209	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	603	Open in IMG/M
3300028047\|Ga0209526_10012972	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	5755	Open in IMG/M
3300028536\|Ga0137415_10714733	Not Available	814	Open in IMG/M
3300028906\|Ga0308309_11386369	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	603	Open in IMG/M
3300030506\|Ga0302194_10265154	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	688	Open in IMG/M
3300030872\|Ga0265723_1006973	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	721	Open in IMG/M
3300031128\|Ga0170823_10110735	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	741	Open in IMG/M
3300031446\|Ga0170820_11244157	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	615	Open in IMG/M
3300031543\|Ga0318516_10456434	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	734	Open in IMG/M
3300031545\|Ga0318541_10401528	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	766	Open in IMG/M
3300031546\|Ga0318538_10781695	Not Available	518	Open in IMG/M
3300031718\|Ga0307474_11264344	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	583	Open in IMG/M
3300031754\|Ga0307475_10025522	All Organisms → cellular organisms → Bacteria	4217	Open in IMG/M
3300031765\|Ga0318554_10613591	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	612	Open in IMG/M
3300031769\|Ga0318526_10430555	Not Available	539	Open in IMG/M
3300031770\|Ga0318521_10243526	All Organisms → cellular organisms → Bacteria	1048	Open in IMG/M
3300031771\|Ga0318546_10993445	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	590	Open in IMG/M
3300031771\|Ga0318546_10995489	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	590	Open in IMG/M
3300031777\|Ga0318543_10211850	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	861	Open in IMG/M
3300031777\|Ga0318543_10478207	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	558	Open in IMG/M
3300031799\|Ga0318565_10587635	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	535	Open in IMG/M
3300031833\|Ga0310917_10868908	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	607	Open in IMG/M
3300031879\|Ga0306919_11458486	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	516	Open in IMG/M
3300031910\|Ga0306923_12326756	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	533	Open in IMG/M
3300031945\|Ga0310913_10912763	Not Available	617	Open in IMG/M
3300031946\|Ga0310910_10617256	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	859	Open in IMG/M
3300031954\|Ga0306926_10874074	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1078	Open in IMG/M
3300032001\|Ga0306922_11412128	Not Available	699	Open in IMG/M
3300032001\|Ga0306922_12321695	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	514	Open in IMG/M
3300032009\|Ga0318563_10383755	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	760	Open in IMG/M
3300032009\|Ga0318563_10769840	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	516	Open in IMG/M
3300032051\|Ga0318532_10339864	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	533	Open in IMG/M
3300032059\|Ga0318533_10900906	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	649	Open in IMG/M
3300032065\|Ga0318513_10507817	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	590	Open in IMG/M
3300032076\|Ga0306924_12291832	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	548	Open in IMG/M
3300032089\|Ga0318525_10666293	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	530	Open in IMG/M
3300032174\|Ga0307470_11275900	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	600	Open in IMG/M
3300032180\|Ga0307471_102814447	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	617	Open in IMG/M
3300032205\|Ga0307472_102530815	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	522	Open in IMG/M
3300032261\|Ga0306920_100201976	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2966	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.64%
Host-Associated	Host-Associated	5.36%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	91.96%
Fungi	Host-Associated → Fungi	3.57%
Aquatic	Environmental → Aquatic	2.68%
Arthropoda	Host-Associated → Arthropoda	0.89%
Plants	Host-Associated → Plants	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	91.07%
Mycelium	Host-Associated → Fungi → Mycelium	3.57%
Sediment	Environmental → Aquatic → Sediment	1.79%
Freshwater	Environmental → Aquatic → Freshwater	0.89%
Peat	Environmental → Terrestrial → Peat	0.89%
Digestive System	Host-Associated → Arthropoda → Digestive System	0.89%
Roots	Host-Associated → Plants → Roots	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	71.43%
Loam	Environmental → Terrestrial → Soil → Loam	17.86%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	3.57%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.79%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.79%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.89%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.89%
Gut	Host-Associated → Arthropoda → Digestive System → Gut	0.89%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	49.11%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	16.96%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.57%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	3.57%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.79%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.79%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.89%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.89%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.89%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.89%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	31.25%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	13.39%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.71%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.25%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.46%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.46%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.68%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.68%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	2.68%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.79%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	1.79%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.79%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	1.79%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.89%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.89%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.89%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.89%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.89%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	0.89%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.89%
Fungus Garden	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Fungus Garden	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459006	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect in plug lysis (for fosmid construction) 0-10cm	Environmental	Open in IMG/M
2170459009	Grass soil microbial communities from Rothamsted Park, UK - July 2009 indirect DNA Tissue lysis 0-10cm	Environmental	Open in IMG/M
2170459023	Grass soil microbial communities from Rothamsted Park, UK - FA3 (control condition)	Environmental	Open in IMG/M
2189573003	Grass soil microbial communities from Rothamsted Park, UK - FE2 (NaCl 30g/L 5ml)	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300001082	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3	Environmental	Open in IMG/M
3300001116	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M2	Environmental	Open in IMG/M
3300001143	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M1	Environmental	Open in IMG/M
3300001162	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M2	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300005162	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB	Environmental	Open in IMG/M
3300005164	Soil and rhizosphere microbial communities from Laval, Canada - mgLAC	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005993	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010162	Labiotermes labralis P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Lab288 P1 (version 2)	Host-Associated	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011392	Attine ant fungus gardens microbial communities from North Carolina, USA - TSNC071 MetaG	Host-Associated	Open in IMG/M
3300012059	Attine ant fungus gardens microbial communities from North Carolina, USA - TSNC075 MetaG	Host-Associated	Open in IMG/M
3300012169	Attine ant fungus gardens microbial communities from North Carolina, USA - TSNC074 MetaG	Host-Associated	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300013025	Fungus gardens microbial communities from leaf cutter ant in Botucatu, State of S?o Paulo, Brazil - Atta bisphaerica ABBM2	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021377	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7	Host-Associated	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026342	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)	Environmental	Open in IMG/M
3300026498	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-49-A	Environmental	Open in IMG/M
3300027070	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF004 (SPAdes)	Environmental	Open in IMG/M
3300027109	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF008 (SPAdes)	Environmental	Open in IMG/M
3300027660	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027669	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M1 (SPAdes)	Environmental	Open in IMG/M
3300027727	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027738	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300030506	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N1_1	Environmental	Open in IMG/M
3300030872	Metatranscriptome of plant litter microbial communities from Maridalen valley, Oslo, Norway - NLI5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.58
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.58
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F084667

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
L01_05078970	2170459006	Grass Soil	AQYKPVQKWQEVLRGSNPALKKKAVVAIGRQLMVDLWRLETGRVRAQELNLVMVEASGV
F47_09189340	2170459009	Grass Soil	MARGVKGAPHPALKKKAVVAIGRPLMVDLWRLQTGRVTAQDLNLIMVEN
FA3_01818570	2170459023	Grass Soil	GSNQALRKKTVVAIGRQLIVDLWRLETGRVTAQELNLVMIEAEGV
FE2_03822380	2189573003	Grass Soil	RSKKWQEVLRGSNPALKKKAVVAIGRQLIVDLWRLETGRVTAQELNLVMIEAEGV
AF_2010_repII_A001DRAFT_100986312	3300000793	Forest Soil	RAALEGKNAASKKKAVVAIARQLIVDLWRLKTGRVSAQELKLVMVGG*
JGI12664J13189_10094281	3300001082	Forest Soil	LFQPEYKAVQKWRQVLEGSNRGLKKKAVVAIGRRLMVDIWRLQTGRISVQELGLIMIEG*
JGI12627J13344_1046721	3300001116	Forest Soil	VLRSTNRTLKKKAVVAIGRQLMVDLWRLQTGRITAKELNLVMIG*
JGI12687J13287_1022211	3300001143	Forest Soil	QKWREVLEGSNRGLKKKAVVAIGRQLIVDIWRLQTGRISAQELGLIMIEA*
JGI12714J13572_10094281	3300001162	Forest Soil	LKGPNPALKKKAVVAIGRQLMVDLWRLQTGRVTAQDLNLIMVEN*
JGI12627J18819_103888781	3300001867	Forest Soil	VAIGRQLIVDLWRLETGRVTAQELNLVMIGAEGV*
JGI25616J43925_100074311	3300002917	Grasslands Soil	VLEGPNRGLKKKAVVAIGRQLIVDIWRLQTGRISAQELNLIMVEG*
Ga0066814_101095552	3300005162	Soil	QYQPVQKWQEVLKGPNPALKKKAVVAIGRQLMVDLWRLQTGRVTAQDLNLIMVEN*
Ga0066815_100533431	3300005164	Soil	GPNPALKKKAVVAIGRQLMVDLWRLQTGRVTAQDLNLIMVEN*
Ga0066903_1087741051	3300005764	Tropical Forest Soil	QEVLRGTNRTLKKKAAVAIGRQLMVDLWRLETGRVSARGLNLVMVGA*
Ga0080027_100953231	3300005993	Prmafrost Soil	NPALKKKAVVAIGRPLMVDLWRLQTGRVTAQDLHLIMVEN*
Ga0075018_106442021	3300006172	Watersheds	VLRGSNPALKKKAVVAIGRQLIVDLWRLETGRVTAQELNLVMIEASGV*
Ga0070765_1005760581	3300006176	Soil	VQKWKEVLAGSNPALKKKAVVAIGRQLIVDLWRLQTGRVTAQELNLVIIGA*
Ga0079219_109387811	3300006954	Agricultural Soil	VQKWQEVLGGTNRTLKKKAVVAIGRQLIVDLWRLETGRATAKELNLAMIGG*
Ga0079219_109630331	3300006954	Agricultural Soil	PNRALKKKAVVAIGRQLMVDLWQLHTGRASAQELNLIMMEG*
Ga0126374_112499081	3300009792	Tropical Forest Soil	KKKAVVAIGRQLMVDLWRMQTGRVTAKELNLVMVGA*
Ga0127503_103261301	3300010154	Soil	KAVVAIGRQLMVDLWRLQTGRVTAQDLNLIMVEN*
Ga0099796_102947821	3300010159	Vadose Zone Soil	QKWQKVLQGTNPALKKKAVVAIGRQVIVDLWRLQTGRVTAQELNLVMIDAEGV*
Ga0131853_109441061	3300010162	Termite Gut	LRGTNRALKKKAVVAIGRQLMVDLWRLQTGRSRAQELNLVLIGG*
Ga0134067_101402061	3300010321	Grasslands Soil	LKGPNKALKKKAVIAIGRQLIVDLWRLQTGKASAEELKLVMIGG*
Ga0074045_100582382	3300010341	Bog Forest Soil	VQKWQEVLRGTNPALKKKAVVAIGRQLMVDLWRLQTGRVTAQELNLVMIGA*
Ga0126370_110266521	3300010358	Tropical Forest Soil	KWQEVLRGTNKTLKKKAVVAIGRQLIVDLWRLQTGRSTAQELNLIMIGG*
Ga0134128_125275901	3300010373	Terrestrial Soil	IARRRGRKKAVVAIGRQLMVDLWRLQTGRVSAQELNLLMIGG*
Ga0126381_1001969701	3300010376	Tropical Forest Soil	PIQKWKAVLEAAHCSLKKKAVVAIGRQLIVDLWRLQTGRASAQELKLIMVGGD*
Ga0126381_1032036341	3300010376	Tropical Forest Soil	YGPIQKWKAVLEAAHCSLKKKAVVAIGRQLIVDLWRLQTGRASAQELKLIMVGGD*
Ga0126381_1049521801	3300010376	Tropical Forest Soil	KKAVVAIGRQLMVDLWRMETGRVTAQELNLVMVGA*
Ga0126383_136236181	3300010398	Tropical Forest Soil	NRTLKKKAVVAIGRQLMVDLWRMETGRVTAQELNLVMVGA*
Ga0150983_125322571	3300011120	Forest Soil	KWKEVLAGSNPALKKKAVVAIGRQLIVDLWRLQTGRVTAQELNLVIIGA*
Ga0153987_10163781	3300011392	Attine Ant Fungus Gardens	KAVQKWQEVLRGTNRGLKKKAVVAIGRQLMVDLWRLQTGRVSAQELNLVMIGG*
Ga0153991_10695561	3300012059	Attine Ant Fungus Gardens	VQKWQEVLRGTNRGLKKKAVVAIGRQLMVDLWRLQTGRVSAQELKLVMIGG*
Ga0153990_10618371	3300012169	Attine Ant Fungus Gardens	QKWQEVLRGSNRGLKKKAVVAIGRQLMVDLWRLQTGRVSAQELNLVMIGG*
Ga0137358_103782422	3300012582	Vadose Zone Soil	LKKKAVVAIGRQLMVDLWRLQTGRVSAQELKLIMIGG*
Ga0137359_108480482	3300012923	Vadose Zone Soil	NPALKKKAVVAIGRQLIVDLWRLQTGRVTAQELNLVMVGA*
Ga0137359_113573161	3300012923	Vadose Zone Soil	KKKAVVAIGRQLMVDLWRLQTGRATAQELNLVMIGA*
Ga0126375_116838321	3300012948	Tropical Forest Soil	LKKKAVVAIGRQLIVDLWRLQTGRSTAQELNLIMIGG*
Ga0157367_11212871	3300013025	Fungus Garden	PPVQKWQEVLEGTNRTLKKKAVVAIGRQLIVDLWRLQTGRASAQQLNLVMIGG*
Ga0182041_113764981	3300016294	Soil	NPGLKKKAVVAIGRRLMVDIWRLQTGRITAQELGLIMIEA
Ga0182033_112979051	3300016319	Soil	EVLEGSNRGLKKKAVVAIGRRLIVDIWRLQTGRISAQELGLIMIEA
Ga0182033_116811771	3300016319	Soil	KKAVVAIGRQLIIDIWRLQTGRISAQELGLIMIEA
Ga0182034_113031441	3300016371	Soil	QKWRQVLEGSNRGLKKKAVVAIGRQLIVDIWRLQTGRICAQELGLIMIEA
Ga0182039_112214731	3300016422	Soil	PVQKWQEVLGGTNRTLKKKAVVAIGRQVIVDLWRLQTGRASAQQLKLVMIGG
Ga0210399_114286751	3300020581	Soil	KAVVAIGRQLIVDLWRLETGRVTAQELNLVMIETSGV
Ga0210408_112592601	3300021178	Soil	PALKKKAVVAIGRQLIVDLWRLQTGRVTAQELNLVMVGA
Ga0210396_112208571	3300021180	Soil	MILFQPEYKAVQKWRQVLEGSNRGLKKKAVVAIGRRLMVDIWRLQTGRISVQELGLIMIE
Ga0210396_113240082	3300021180	Soil	RGSNPALKKKAVVAIGRQLIVDLWRLETGRVTAQELNLVMIEAEGV
Ga0210396_115510911	3300021180	Soil	KKAVVAIGRQLMVDLWRLQTGRVTAQGLNLVMIDA
Ga0210388_100941702	3300021181	Soil	KKKAVVAIGRQLIVDLWRLETGRVTAQELNLVMIEAEGV
Ga0210388_110366471	3300021181	Soil	KKAVVAIGRQLIVDLWRLETGRVTAQELNLVMVDA
Ga0213874_103254791	3300021377	Plant Roots	RGLKKKAVVAIGRRLLVDIWRLQTGRISAQELGLIMMEA
Ga0210393_109883751	3300021401	Soil	KAVQKWQEVLRGSNPALKKKAVVAIGRQLIVDLWRLETGRVTAQELNLVMIETSGV
Ga0210393_111314731	3300021401	Soil	SNPALKKKAVVAIGRQLIVDLWRLETGRVTAQELNLVMIEAEGV
Ga0210397_111972951	3300021403	Soil	ALKKKAVVAIGRQLIVDLWRLQTGRVTAQELNLLMIGA
Ga0210397_112091471	3300021403	Soil	KKKAVVAIGRQLMVDLWRLETGRVTAQELNLVMIDAEGV
Ga0210386_116797161	3300021406	Soil	LKKKAVVAIGRQLMVDLWRLQTGRASAQQLNLVMIGG
Ga0210398_111593881	3300021477	Soil	VLRGSNPALKKKAVVAIGRQLIVDLWRLETGRVTAQELNLVMIEAEGV
Ga0242654_103633441	3300022726	Soil	PNPALKKKAVVAIGRQLMVDLWRLQTGRVTAQDLNLIMVEN
Ga0207665_115005941	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	AVVAIGRQLMVDLWRLETGRVTAQELNLVMIDAEGV
Ga0209057_11570671	3300026342	Soil	LKGPNKALKKKAVIAIGRQLIVDLWRLQTGKASAEELKLVMIEG
Ga0257156_10941591	3300026498	Soil	TNPALKKKAVVAIGRQLMVDLWRLQTGRVTAQDLNLIMVEN
Ga0208365_10454161	3300027070	Forest Soil	KPVQKWQEVLRGSNPALKKKAVVAIGRQLMVDLWRLETGRVTAQELNLVMIEAEGV
Ga0208603_10556331	3300027109	Forest Soil	LQGTNPALKKKAVVAIGRQLIVDLWRLQTGRVTVQELNLVMVGA
Ga0209736_11085962	3300027660	Forest Soil	KKKAVMAIGRQLMVDLWRLQTGRVTAQELNLIMVTD
Ga0208981_11006481	3300027669	Forest Soil	NPALKKKAVVAIGRQLMVDLWRLQTGRVTAQELNLVMIGDEGV
Ga0208981_11403581	3300027669	Forest Soil	RGTNRALKKKAVVAIGRQLMVDLWRLQTGRVNAQELNLVMIGG
Ga0209328_100231601	3300027727	Forest Soil	PQYKPVQKWLEVLRGPNPALKKKAVIAIGRQLIVDLWRLQTGRVTAQELNLIMVTD
Ga0209328_102523561	3300027727	Forest Soil	PQYKPVQKWLEVLRGPNPALKKKAVIAIGRQLMVDLWRLQTGRVTAQELNLIMVTD
Ga0208989_102039301	3300027738	Forest Soil	KWQEVLRGTNPALKKKAVVAIGRQLMVDLWRLQTGRVTAQELNLVMIGD
Ga0209169_105658382	3300027879	Soil	EVLRGSNPASKKKAVVAIGRQLMVDLWRLQTGRVTAQELNLVMVEGPEGV
Ga0209068_106792092	3300027894	Watersheds	PALKKKAVVAIGRQLIVDLWRLETGRVTAQELNLVMIEAEGV
Ga0209526_100129729	3300028047	Forest Soil	EVLRGTNRALKKKAVVAIGRQLMVDLWRLQTGRVSAQELNLVMIEG
Ga0137415_107147331	3300028536	Vadose Zone Soil	KKKAVVAIGRQLMVDLWRLQTGRVTAQELNLVMIGD
Ga0308309_113863691	3300028906	Soil	KAVVAIGRQLMVDLWRLQTGRVTAQELNLVMVEGPEGV
Ga0302194_102651541	3300030506	Bog	GAMRKKAVVAIGRRLAIDLWRIETKRATAEELGLLMLR
Ga0265723_10069731	3300030872	Soil	PALKKKAVVAIGRQLIVDLWRLETGRVTAQELNLVMIETSGV
Ga0170823_101107351	3300031128	Forest Soil	KKKAVVAIGRQLIVDLWRLETGRVTAQELNLVMIDAQGV
Ga0170820_112441571	3300031446	Forest Soil	WQEVLRGSNPALKKKAVVAIGRQLMVDLWRLETGRVTAQELNLVMVEA
Ga0318516_104564341	3300031543	Soil	KKKAVVAIGRQLMVDLWRMETGRVTAEELNLVMIGA
Ga0318541_104015282	3300031545	Soil	KWRAALEGKNAASKKKAVVAIARQLIVDLWRLKTGRVSAQELKLVMVGG
Ga0318538_107816951	3300031546	Soil	LEGQNRAHKKKAVVAIGRQLAVDLWRLKTRRVTAQQLKLIMVGGSL
Ga0307474_112643441	3300031718	Hardwood Forest Soil	QEVLKGKNPALKKKAVVAIGRQLIVDLWRLETGRVTAQELNLVMVDA
Ga0307475_100255224	3300031754	Hardwood Forest Soil	WRAVLEGSNRGLKKKAVVAIGRQLMVDLWRLQTGRISAQELNLIMVEG
Ga0318554_106135911	3300031765	Soil	WQEVLRGTNGTLKKKAVVAIGRQLMVDLWRMETGRVTAEELNLVMIGA
Ga0318526_104305551	3300031769	Soil	LKKKAVVAIGRQLIIDIWRLQTGRISAQELGLIMIEA
Ga0318521_102435262	3300031770	Soil	YEPFKKWATHLESKNRALKKKAVVAIGRQLVVDLWRLETGRTSAQQLNLVMVEGQAF
Ga0318546_109934451	3300031771	Soil	LKKKAVVAIGRQLIVDLWRLQTGRASAKELNLVMIGG
Ga0318546_109954891	3300031771	Soil	THLESKNRALKKKAVVAIGRQLVVDLWRLETGRTSAQQLNLVMVEGQAF
Ga0318543_102118501	3300031777	Soil	QEVLGGTNRTLKKKAVVAIGRQLIVDLWRLQTGRASAKELNLVMIGG
Ga0318543_104782071	3300031777	Soil	VLEGSNRGLKKKAVVAIGRQLIVDIWRLQTRRICAQELGLIMIEA
Ga0318565_105876351	3300031799	Soil	GTNRTLKKKAVVAIGRQLIVDLWRLQTGRASAKELNLVMIGG
Ga0310917_108689082	3300031833	Soil	KWQEVLKGSNRGLKKKAVVAIGRQLIVDIWRLQTGQITAQELGLIMIEA
Ga0306919_114584861	3300031879	Soil	KVLRGTNRALKKKAVVAIGRQLIVDLWRLQTGRISAQELNLVMIGG
Ga0306923_123267561	3300031910	Soil	RALKKKAIVAIGRQLMVDLWRLQTGHISAQELNLVMIGD
Ga0310913_109127631	3300031945	Soil	KKKAVVAIGRQLAVDLWRLKTRRVTAQQLKLIMVGGSL
Ga0310910_106172563	3300031946	Soil	ALKKKAIVAIGRQLTVDLWRLQTGHISAQELNLVMIDG
Ga0306926_108740741	3300031954	Soil	VLRGTNRTLKKKAVVAIGRQLIVDLWRLQTGRASAQQLNPVMIGG
Ga0306922_114121281	3300032001	Soil	RAALEGKNAASKKKAVVAIARQLIVDLWRLKTGRVSAKELKLVMVGG
Ga0306922_123216951	3300032001	Soil	EVLEGSNPGLKKKAVVAIGRRLMVDIWRLQTGRITAQELGLIMIEA
Ga0318563_103837551	3300032009	Soil	VLQGTNRALKKKAVVAIGRQLMVDLWRLQTGRASAQELKLIMIGG
Ga0318563_107698401	3300032009	Soil	VQKWREVLEGSNRGLKKKAVVAIGRRLIVDIWRLQTGRISAQELGLIMIEA
Ga0318532_103398641	3300032051	Soil	SNRGLKKKAVVAIGRRLIVDIWRLQTGRISAQELGLIMIEA
Ga0318533_109009061	3300032059	Soil	GTNKTLKKKAVVAIGRQLIVDLWRLQTGRLSAQELNLVLIGG
Ga0318513_105078171	3300032065	Soil	AVQKWRQVLEGSNRGLKKKAVVAIGRQLIVDIWRLQTRRICAQELGLIMIEA
Ga0306924_122918321	3300032076	Soil	TNGGLKKKAVVAIGRQLLVDLWRLQTGRISAEALQSV
Ga0318525_106662931	3300032089	Soil	PEYKAVQKWREVLEGSNRGLKKKAVVAIGRRLIVDIWRLQTGRISAQELGLIMIEA
Ga0307470_112759001	3300032174	Hardwood Forest Soil	KPVQKWQEVLRGSNRGLKKKAVVAIGRQLMVDLWRLQTGRVSAQELNLLMIGG
Ga0307471_1028144471	3300032180	Hardwood Forest Soil	NRGLKKKAVVAIGRQLMVDLWRLQTGRVSAQELNLLMIGG
Ga0307472_1025308151	3300032205	Hardwood Forest Soil	KWQEVLKGKNPALKKKAVVAIGRQLIVDLWRLETGRVTAQELNLVMIEAEGA
Ga0306920_1002019763	3300032261	Soil	TNRALKKKAIVAIGRQLMVDLWRVQTGRISAQELNLVMIGG

Hidden Markov Model


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