3300000549: Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - LJQ_Illumina_Assembled

Overview

Basic Information

• IMG/M Taxon OID: 3300000549
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046224 | Gp0055034 | Ga0011517
• Sample Name: Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - LJQ_Illumina_Assembled
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI), Lifesequencing S.L.
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 150678636
• Sequencing Scaffolds: 21
• Novel Protein Genes: 23
• Associated Families: 23

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	1
All Organisms → cellular organisms → Bacteria	3
Not Available	3
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	3
All Organisms → cellular organisms → Bacteria → Acidobacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Kamptonema → Kamptonema sp. PCC 6506	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Quercus Rhizosphere Microbial Communities From Sierra Nevada National Park, Granada, Spain
• Type: Host-Associated
• Taxonomy: Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Quercus Rhizosphere → Quercus Rhizosphere Microbial Communities From Sierra Nevada National Park, Granada, Spain

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → rhizosphere → soil
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant rhizosphere

Location Information

• Location: Sierra Nevada National Park, Granada, Spain
• Coordinates
  • Lat. (^o): 36.95744
  • Long. (^o): -3.46336
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002821	Metagenome / Metatranscriptome	528	Y
F004033	Metagenome / Metatranscriptome	456	Y
F010911	Metagenome / Metatranscriptome	297	Y
F018331	Metagenome / Metatranscriptome	235	Y
F020786	Metagenome / Metatranscriptome	222	Y
F023628	Metagenome	209	Y
F024197	Metagenome / Metatranscriptome	207	Y
F030548	Metagenome / Metatranscriptome	185	Y
F036403	Metagenome / Metatranscriptome	170	Y
F036441	Metagenome	170	Y
F042596	Metagenome	158	Y
F049264	Metagenome / Metatranscriptome	147	Y
F050290	Metagenome	145	Y
F056041	Metagenome	138	Y
F057223	Metagenome	136	Y
F064757	Metagenome	128	Y
F068102	Metagenome	125	Y
F085870	Metagenome	111	Y
F094137	Metagenome / Metatranscriptome	106	Y
F096090	Metagenome	105	Y
F099234	Metagenome / Metatranscriptome	103	Y
F100679	Metagenome / Metatranscriptome	102	Y
F103636	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
LJQas_1000721	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	5261
LJQas_1008434	All Organisms → cellular organisms → Bacteria	1253
LJQas_1013323	Not Available	968
LJQas_1015100	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	905
LJQas_1018066	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	821
LJQas_1025081	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	694
LJQas_1025743	Not Available	686
LJQas_1027108	All Organisms → cellular organisms → Bacteria → Acidobacteria	668
LJQas_1027574	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	663
LJQas_1028946	Not Available	647
LJQas_1030349	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	632
LJQas_1035726	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	584
LJQas_1036073	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	582
LJQas_1036549	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	578
LJQas_1041182	All Organisms → cellular organisms → Bacteria	548
LJQas_1042726	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	538
LJQas_1043496	All Organisms → cellular organisms → Bacteria	534
LJQas_1043710	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	533
LJQas_1045436	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	523
LJQas_1046240	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Kamptonema → Kamptonema sp. PCC 6506	519
LJQas_1047071	All Organisms → cellular organisms → Bacteria → Acidobacteria	515

Sequences

Scaffold ID	Protein ID	Family	Sequence
LJQas_1000721	LJQas_10007214	F020786	MSNALRPIGHFAAWIVWHSTGVSLLGDLKSPRPPRG*
LJQas_1008434	LJQas_10084342	F036403	MKALGLIAILLLGTGIVCAQQQPSDVEVVKASWSKVRIGWERDPFAGPLENFDEMRSRARNERRIAQGGGERAKREAKADEANLAKQREKNPPQYYFIYKTKIKNNYTSAITQIDWDYIFLERGVENELGRQQFTSDEQIGAGKSKELTVRITSPPTKTVSVTSLNLEEHDRFTEKIELIRVKYSDGRVWQPQ*
LJQas_1013323	LJQas_10133232	F049264	MRFVVAILACLVLSSVGVGTAQAAPPSAVVLPKKATLLPDGSVQIRMKVRCNDQQQAFEWSVDVRQGTIFGNDSAGPVAGLITCDGRFHRVDALVAGANGPFTAGPATVQALVQLFDADEGSDVELEDRAVVRL
LJQas_1015100	LJQas_10151002	F004033	MKNIVVGIALLLISVAGYAADRPTTPELNPPNNGEEWLKLSSTEKLFWSIGYAQGFQEALDKIDVTSGPASPCASLAVRTERQSSTSGKLSGFELVSGLERFYSDPANGIIPVGSAIRIYLLQASGKDQTTIQELIDTARLLGQQAAARPRQ*
LJQas_1018066	LJQas_10180661	F094137	MLLWTSFVSVLFAFSVYAWRDLFKTERVVRPYIDDIPFQPNRYRHND*
LJQas_1022016	LJQas_10220161	F023628	VLDEPTLEKDVTTVGGVVKNVSNQHLSGLSVTLELRRRKDGKTEQVVLRVTPDRLQPQQEGAYAAKFSNDDFASVRLAGVQADPQATLIAYSSAQGKRRPPERLQPQTIVVKRSGKPGEFLNTPDNPARIP*
LJQas_1025081	LJQas_10250811	F010911	VSWSVDANGHVFPAHGGAADEEYPHVVVDRGGVEWAVREVETPQPWARAARCLVLNSRECVRRIWRYPAHWRKLDADDLLRLGVVD*
LJQas_1025743	LJQas_10257432	F085870	MKALLLIIGILAATAGGVITYRELYVEQKSAVIITETDIRQLPNYTRVVGGA
LJQas_1026037	LJQas_10260371	F096090	SFDNDILRISAMDDVERAERSHVEAIGRLERLAEPKLDTEPNPLMISYKEKLMLLDDAIAECQANIDGNRQNAHLRDQLLAMYTEKQQTLEDVLREDTHEQTP*
LJQas_1027108	LJQas_10271082	F024197	EALDHLDPNGYHPSVDVAAVATEKSRRLRGSVIRKASLSVDAEDTPPAGLSFTKYELRMAGDDKILGNDDDWIGRDGMLMRISEVAKGGAGRSVSAGALQP*
LJQas_1027574	LJQas_10275741	F068102	EVMVRKTFLLFGATLVLACGDPGPLTSETATALIRARAPKIEPIYAEVPEKVWWTPQSPKDDYDELAVRTLRNLERAGLVVVTEQVSGDSATYLAKVTQKGFPILGTAPSYRGRALRGKICEKVYDGLQNFVRHPHDPHVGHGELVWHYDNPTFLYPMFETKINKPLKKPFASHVSFWYEKHQWRFSMNVAKTEATGASSTAAPASPR*
LJQas_1028946	LJQas_10289461	F056041	MAVKGEEVASSIDAQVRESIEKMVAEIRSSVEDVRVAVDQQLKAALQSVQADVNSITFLPQIRKSIAELEEELEADRPEPVALAAAAPAVSGAARVKNAVRIIERGRSQ
LJQas_1030349	LJQas_10303492	F002821	MSGPWKASLRLSALAFAVFLSACLKSTEPQPSLIQLNGTWHYTGIQTVPVRETLAGTLTISLESGTSFQGRLDLVGVNSQTQQQRLLSGVVSGSESGTDVIDFDADLEATPRRHVGQIVADTITGTWVSSADGNMASGTFRVERETQ*
LJQas_1035726	LJQas_10357262	F050290	VRRPWESEDAAFSFLLRAVAVAIVVVLVSLALKAIF
LJQas_1036073	LJQas_10360731	F099234	MPAAPSPLVRATLLLLAAALLVVGATLGYIAVIALRRSEGVFMPAGCVALAALAAGVWLLRLGLRG*
LJQas_1036549	LJQas_10365492	F036441	AAVWVGARIFRNEYGATPGWKSKAVEILPPVHKLDDFGLVLITRGTADATDLLWLLGYGALFFALGLYILRRGSLAD*
LJQas_1041182	LJQas_10411821	F030548	PSRNVGKKRQETDDREVPAELIDRREAQDRPKTEHGGGARSPVDSMHVDEPTHQDNARGHRQRRES*
LJQas_1042726	LJQas_10427262	F042596	VADESKKEGGSEEEAGEFADFMADISQEIAQRVQSLDTTPKAKAPAPEPRKTPAAPEAGLITEWPNIADRMIEEMR*
LJQas_1043496	LJQas_10434962	F103636	GGGGCVQYYVDDMPWTSAQPGDINNFVNSNEVVGVEVYAGPGTPAQYSRGMQDCTTVVLWTKFKIRD*
LJQas_1043710	LJQas_10437102	F100679	MERITRRRERSHGLRQPARQATFAAMRPYFLAFRRTLPGGMIVLVSLDIDLEGVVHGMLQVERRLDPSRQLFDTAPVVARASGRSKDDVLKKLRTLAENDAEL
LJQas_1045436	LJQas_10454362	F018331	IPNRIYMTSRTGLEAEAISRLTDGLQPPAIRAILVQCLVGELAPSAAISRMLETEGAVTVRAAIDDVTHRAATISRASDMLVHDRVDELTQIFVEKVAELAASNESAKSRAGRSRPQAPEDFRT*
LJQas_1046240	LJQas_10462401	F057223	DANTNGFDDSRSRSLVRVGSNELSYANALALLPTNDLLIADSDSNELRIVRDTDADGIPDWLDPVPYYSYRFSDDAPLDITANSRGVVFSHSVGNDTVMLALYDDNHNGYADRDEVVVEGLSIDNNPIFHGLTVDREGTVYVIENAAGTADLVPDGGNLGAPQIDAFPDPALN
LJQas_1047071	LJQas_10470712	F064757	MATGLVIHISSGEDRHTEILTDDNISIGTMETCDVRLRSSRLPKDAANAVLLELARSDG