Metagenome / Metatranscriptome Family F100679

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F100679
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	94 residues
Representative Sequence	MRPHFLAFRRTLPGGMIVLVSLEVDAEGTVHGMLQVERRVDPTRQLFATAPVVARASGATKDEVLRKLRALAENDAELAEQIAAWEAAHPSSRKPGEPWQQ
Number of Associated Samples	66
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	60.40 %
% of genes near scaffold ends (potentially truncated)	25.49 %
% of genes from short scaffolds (< 2000 bps)	80.39 %
Associated GOLD sequencing projects	58
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.62

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (97.059 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (15.686 % of family members)
Environment Ontology (ENVO)	Unclassified (44.118 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (50.980 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 20.93% β-sheet: 31.78% Coil/Unstructured: 47.29%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.62
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.62
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF00480	ROK	15.69
PF09137	Glucodextran_N	7.84
PF00300	His_Phos_1	7.84
PF13302	Acetyltransf_3	4.90
PF01594	AI-2E_transport	2.94
PF04343	DUF488	1.96
PF07676	PD40	0.98
PF05974	DUF892	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG1940	Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain	Transcription [K]	31.37
COG3387	Glucoamylase (glucan-1,4-alpha-glucosidase), GH15 family	Carbohydrate transport and metabolism [G]	7.84
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	2.94
COG3189	Uncharacterized conserved protein YeaO, DUF488 family	Function unknown [S]	1.96
COG3685	Ferritin-like metal-binding protein YciE	Inorganic ion transport and metabolism [P]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	97.06 %
Unclassified	root	N/A	2.94 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	97.06 %
Unclassified	root	N/A	2.94 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	97.06 %
Unclassified	root	N/A	2.94 %

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	43.14 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	6.86 %
Unclassified	root	N/A	2.94 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.98 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	43.14 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	6.86 %
Unclassified	root	N/A	2.94 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.98 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	14.71 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	6.86 %
Unclassified	root	N/A	2.94 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.98 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	14.71 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	6.86 %
Unclassified	root	N/A	2.94 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.98 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	14.71 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	6.86 %
Unclassified	root	N/A	2.94 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.98 %

Name	Rank	Taxonomy	Distribution
unclassified Gemmatimonadaceae	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae	8.82 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	6.86 %
Gemmatirosa	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa	5.88 %
Unclassified	root	N/A	2.94 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.98 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	8.82 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	6.86 %
Gemmatirosa kalamazoonesis	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	5.88 %
Unclassified	root	N/A	2.94 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2199352024\|deeps__Contig_198550	All Organisms → cellular organisms → Bacteria → Proteobacteria	2213	Open in IMG/M
2199352024\|deeps__Contig_69142	All Organisms → cellular organisms → Bacteria	999	Open in IMG/M
2199352024\|deeps_contig35196.22416	All Organisms → cellular organisms → Bacteria → Proteobacteria	1479	Open in IMG/M
3300000549\|LJQas_1043710	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	533	Open in IMG/M
3300003324\|soilH2_10018287	All Organisms → cellular organisms → Bacteria	9241	Open in IMG/M
3300003324\|soilH2_10066759	All Organisms → cellular organisms → Bacteria	1838	Open in IMG/M
3300005327\|Ga0070658_10037580	All Organisms → cellular organisms → Bacteria	3904	Open in IMG/M
3300005327\|Ga0070658_10264127	All Organisms → cellular organisms → Bacteria	1462	Open in IMG/M
3300005327\|Ga0070658_11094945	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	693	Open in IMG/M
3300005327\|Ga0070658_11520309	All Organisms → cellular organisms → Bacteria	580	Open in IMG/M
3300005327\|Ga0070658_11945065	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300005329\|Ga0070683_100343881	All Organisms → cellular organisms → Bacteria	1420	Open in IMG/M
3300005336\|Ga0070680_100030443	All Organisms → cellular organisms → Bacteria → Proteobacteria	4336	Open in IMG/M
3300005336\|Ga0070680_101867716	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	521	Open in IMG/M
3300005341\|Ga0070691_10253466	All Organisms → cellular organisms → Bacteria	945	Open in IMG/M
3300005344\|Ga0070661_100835104	All Organisms → cellular organisms → Bacteria	757	Open in IMG/M
3300005356\|Ga0070674_101331488	All Organisms → cellular organisms → Bacteria	641	Open in IMG/M
3300005364\|Ga0070673_101874186	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	568	Open in IMG/M
3300005366\|Ga0070659_100194263	All Organisms → cellular organisms → Bacteria	1669	Open in IMG/M
3300005435\|Ga0070714_100781963	All Organisms → cellular organisms → Bacteria	924	Open in IMG/M
3300005435\|Ga0070714_100855747	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	882	Open in IMG/M
3300005436\|Ga0070713_100818982	All Organisms → cellular organisms → Bacteria	893	Open in IMG/M
3300005457\|Ga0070662_102003181	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	500	Open in IMG/M
3300005530\|Ga0070679_100021900	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	6243	Open in IMG/M
3300005530\|Ga0070679_100356340	All Organisms → cellular organisms → Bacteria	1410	Open in IMG/M
3300005530\|Ga0070679_100972129	All Organisms → cellular organisms → Bacteria	793	Open in IMG/M
3300005530\|Ga0070679_101484989	All Organisms → cellular organisms → Bacteria	625	Open in IMG/M
3300005535\|Ga0070684_100900343	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	829	Open in IMG/M
3300005616\|Ga0068852_100005004	All Organisms → cellular organisms → Bacteria	9426	Open in IMG/M
3300005616\|Ga0068852_101004891	All Organisms → cellular organisms → Bacteria	853	Open in IMG/M
3300006804\|Ga0079221_10473147	All Organisms → cellular organisms → Bacteria	803	Open in IMG/M
3300007820\|Ga0104324_133226	All Organisms → cellular organisms → Bacteria	3091	Open in IMG/M
3300010038\|Ga0126315_11089645	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	539	Open in IMG/M
3300010045\|Ga0126311_11879681	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	508	Open in IMG/M
3300010229\|Ga0136218_1003716	Not Available	1690	Open in IMG/M
3300012530\|Ga0136635_10300892	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	572	Open in IMG/M
3300012680\|Ga0136612_10109336	All Organisms → cellular organisms → Bacteria	1401	Open in IMG/M
3300012682\|Ga0136611_10114795	All Organisms → cellular organisms → Bacteria	1884	Open in IMG/M
3300012682\|Ga0136611_10123638	All Organisms → cellular organisms → Bacteria	1807	Open in IMG/M
3300012682\|Ga0136611_10433866	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	839	Open in IMG/M
3300012682\|Ga0136611_10833246	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	554	Open in IMG/M
3300012955\|Ga0164298_10053222	All Organisms → cellular organisms → Bacteria	1956	Open in IMG/M
3300012955\|Ga0164298_10498891	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	813	Open in IMG/M
3300012958\|Ga0164299_10632140	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	737	Open in IMG/M
3300012960\|Ga0164301_10605961	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	809	Open in IMG/M
3300012986\|Ga0164304_10250007	All Organisms → cellular organisms → Bacteria	1188	Open in IMG/M
3300012986\|Ga0164304_11062463	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	645	Open in IMG/M
3300012986\|Ga0164304_11368765	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	580	Open in IMG/M
3300013100\|Ga0157373_10210284	All Organisms → cellular organisms → Bacteria	1372	Open in IMG/M
3300013100\|Ga0157373_11135359	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	587	Open in IMG/M
3300013102\|Ga0157371_10066259	All Organisms → cellular organisms → Bacteria → Proteobacteria	2557	Open in IMG/M
3300013102\|Ga0157371_10377148	All Organisms → cellular organisms → Bacteria	1035	Open in IMG/M
3300013105\|Ga0157369_10211791	All Organisms → cellular organisms → Bacteria	2031	Open in IMG/M
3300013307\|Ga0157372_10043746	All Organisms → cellular organisms → Bacteria	4961	Open in IMG/M
3300013307\|Ga0157372_10690207	All Organisms → cellular organisms → Bacteria	1188	Open in IMG/M
3300015192\|Ga0167646_1018864	All Organisms → cellular organisms → Bacteria	1784	Open in IMG/M
3300015241\|Ga0137418_11205288	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	532	Open in IMG/M
3300015374\|Ga0132255_104585613	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	585	Open in IMG/M
3300017695\|Ga0180121_10110120	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	993	Open in IMG/M
3300017695\|Ga0180121_10308053	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	602	Open in IMG/M
3300018067\|Ga0184611_1290241	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	570	Open in IMG/M
3300019886\|Ga0193727_1185795	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	530	Open in IMG/M
3300020082\|Ga0206353_11551245	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	801	Open in IMG/M
3300020082\|Ga0206353_11955028	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	524	Open in IMG/M
3300021363\|Ga0193699_10000663	All Organisms → cellular organisms → Bacteria	14196	Open in IMG/M
3300021363\|Ga0193699_10029043	All Organisms → cellular organisms → Bacteria	2062	Open in IMG/M
3300021363\|Ga0193699_10032387	All Organisms → cellular organisms → Bacteria	1964	Open in IMG/M
3300022756\|Ga0222622_10119877	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1651	Open in IMG/M
3300025909\|Ga0207705_10008064	All Organisms → cellular organisms → Bacteria	7720	Open in IMG/M
3300025909\|Ga0207705_10095428	All Organisms → cellular organisms → Bacteria	2182	Open in IMG/M
3300025909\|Ga0207705_10135703	All Organisms → cellular organisms → Bacteria	1834	Open in IMG/M
3300025909\|Ga0207705_10721550	All Organisms → cellular organisms → Bacteria → Proteobacteria	775	Open in IMG/M
3300025916\|Ga0207663_10433059	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1011	Open in IMG/M
3300025917\|Ga0207660_10174769	All Organisms → cellular organisms → Bacteria	1665	Open in IMG/M
3300025917\|Ga0207660_10752900	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	795	Open in IMG/M
3300025921\|Ga0207652_11079281	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	703	Open in IMG/M
3300025921\|Ga0207652_11080914	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	702	Open in IMG/M
3300025928\|Ga0207700_11012678	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	743	Open in IMG/M
3300025932\|Ga0207690_11714444	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	525	Open in IMG/M
3300025937\|Ga0207669_11281446	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	622	Open in IMG/M
3300025960\|Ga0207651_11354964	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	640	Open in IMG/M
3300026041\|Ga0207639_10046333	All Organisms → cellular organisms → Bacteria	3280	Open in IMG/M
3300026142\|Ga0207698_10977453	All Organisms → cellular organisms → Bacteria	856	Open in IMG/M
3300027546\|Ga0208984_1089366	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	666	Open in IMG/M
3300027766\|Ga0209796_10016820	All Organisms → cellular organisms → Bacteria	2224	Open in IMG/M
3300028712\|Ga0307285_10028986	All Organisms → cellular organisms → Bacteria	1313	Open in IMG/M
3300028714\|Ga0307309_10089961	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	721	Open in IMG/M
3300028782\|Ga0307306_10060441	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	959	Open in IMG/M
3300031548\|Ga0307408_102464919	All Organisms → cellular organisms → Bacteria → Proteobacteria	506	Open in IMG/M
3300031911\|Ga0307412_12147295	Not Available	519	Open in IMG/M
3300031938\|Ga0308175_100003947	All Organisms → cellular organisms → Bacteria	10351	Open in IMG/M
3300031939\|Ga0308174_10108839	All Organisms → cellular organisms → Bacteria	2001	Open in IMG/M
3300031939\|Ga0308174_11504190	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	577	Open in IMG/M
3300031996\|Ga0308176_11928959	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	631	Open in IMG/M
3300032080\|Ga0326721_10177067	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1106	Open in IMG/M
3300032126\|Ga0307415_100230321	All Organisms → cellular organisms → Bacteria	1492	Open in IMG/M
3300034268\|Ga0372943_0505082	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	789	Open in IMG/M
3300034384\|Ga0372946_0002349	All Organisms → cellular organisms → Bacteria	8482	Open in IMG/M
3300034384\|Ga0372946_0272836	All Organisms → cellular organisms → Bacteria → Proteobacteria	819	Open in IMG/M
3300034384\|Ga0372946_0272923	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	819	Open in IMG/M
3300034384\|Ga0372946_0576350	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	545	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	64.71%
Host-Associated	Host-Associated	34.31%
Engineered	Engineered	0.98%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	54.90%
Plants	Host-Associated → Plants	34.31%
Aquatic	Environmental → Aquatic	9.80%
Lab Enrichment	Engineered → Lab Enrichment	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	54.90%
Rhizosphere	Host-Associated → Plants → Rhizosphere	27.45%
Freshwater	Environmental → Aquatic → Freshwater	7.84%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.88%
Sediment	Environmental → Aquatic → Sediment	1.96%
Phylloplane	Host-Associated → Plants → Phylloplane	0.98%
Unclassified	Engineered → Lab Enrichment → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	36.27%
Loam	Environmental → Terrestrial → Soil → Loam	18.63%
Soil	Host-Associated → Plants → Rhizosphere → Soil	16.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.78%
Ice	Environmental → Aquatic → Freshwater → Ice	7.84%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.96%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	0.98%
Unclassified	Engineered → Lab Enrichment → Unclassified → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.51%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	17.65%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	16.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.78%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	7.84%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.90%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.92%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.98%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	0.98%
Unclassified	Engineered → Lab Enrichment → Unclassified → Unclassified → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	15.69%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	12.75%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	11.76%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	7.84%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	7.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.94%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	2.94%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	1.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.96%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	1.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.96%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.98%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.98%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.98%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.98%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.98%
Quercus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Quercus Rhizosphere	0.98%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	0.98%
Soil	Engineered → Lab Enrichment → Unclassified → Unclassified → Unclassified → Soil	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2199352024	Bare-fallow DEEP SOIL	Environmental	Open in IMG/M
3300000549	Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - LJQ_Illumina_Assembled	Host-Associated	Open in IMG/M
3300003324	Sugarcane bulk soil Sample H2	Environmental	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300007820	Permafrost core soil microbial communities from Svalbard, Norway - sample 2-12-2 Soapdenovo	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010229	Soil microbial communities from Bangor area, North Wales, UK, treated with sorgoleone, replicate 1	Engineered	Open in IMG/M
3300012530	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ85 (21.06)	Environmental	Open in IMG/M
3300012680	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ224A (23.06)	Environmental	Open in IMG/M
3300012682	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ223 (23.06)	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300015192	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-2a, rock/snow interface)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017695	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ540 (21.06) (version 2)	Environmental	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300020082	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021363	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027546	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M3 (SPAdes)	Environmental	Open in IMG/M
3300027766	Agave microbial communities from Guanajuato, Mexico - Or.Sf.rz (SPAdes)	Host-Associated	Open in IMG/M
3300028712	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_139	Environmental	Open in IMG/M
3300028714	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_196	Environmental	Open in IMG/M
3300028782	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_193	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032080	Soil microbial communities from Southern Great Plains, Lamont, Oklahoma, United States - SGP_1_2016	Environmental	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300034268	Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_FRD_1.2	Environmental	Open in IMG/M
3300034384	Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_KNG_2.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
deeps_03802680	2199352024	Soil	MIVLVSLSIDKEGTVHGALQVERRLDPRRQLFDTAPVVARATGKSKDDVLAKLRAMAEDDAELAQKLAEWEATHPSTRKPGERYQP
deeps_01091750	2199352024	Soil	MRPHFLAFRRTLPGGMIVLVSLAIDPEGVVRGMLQVERRLDPSRQLFDTAPVVARAEGTSKDDVLKKLRALAENDAELSAKLAEWEAAHPSHRKPGESYRP
deeps_03922980	2199352024	Soil	MRPHFLAFRRTLPGGMIVLVSLEMVAEGAVHGVLQVERRKDPSRQLFATAPVVAEASGTSKDDVLRKLRALAENDEELSAHLAAWELAHPSSPRDGWV
LJQas_10437102	3300000549	Quercus Rhizosphere	MERITRRRERSHGLRQPARQATFAAMRPYFLAFRRTLPGGMIVLVSLDIDLEGVVHGMLQVERRLDPSRQLFDTAPVVARASGRSKDDVLKKLRTLAENDAEL
soilH2_100182874	3300003324	Sugarcane Root And Bulk Soil	MRPHFLAFRRTLPGGMIVLVSLEVDAEGTVHGMLQVERRVDPTRQLFATAPVVARASGATKDDVLRKLRALAENDAELAEQIAAWEAAHPSSRKPGEAWEK*
soilH2_100667593	3300003324	Sugarcane Root And Bulk Soil	VLVSLEVDAEGTVHGMLQVERRVDPTRQLFATAPVVARASGATKDEVLKKLRALAENDAELAEQIAAWEAAHPSTRKPGEPWQQ*
Ga0070658_100375803	3300005327	Corn Rhizosphere	MIVLVSLEVDAEGTVHGMLQVERRVDPTRQLFATAPVVARASGATKDDVLRKLRALAENDAELGEQIAAWEAAHPSSRKPGERY*
Ga0070658_102641272	3300005327	Corn Rhizosphere	MRPHFLAFRRTLPGGMIVLVSLEVDAEGTVHGMLQVERRVDPTRQLFATAPVVARASGATKDEVLRKLRTLAENDAELAEQIAAWEAAHPSSRKPGEPFHH*
Ga0070658_110949451	3300005327	Corn Rhizosphere	HLGAMRPHFLAFRRTLPGGVIVLVSLQMVSETECHGVLQVERRKDPARQTLSTAPIIAKATGGSKDDVLRQLRALAENDEELATQIAAWEEAHPPIGRGEIGPE*
Ga0070658_115203091	3300005327	Corn Rhizosphere	RRTLPGGMIVLVSLEVDAEGTVHGMLQVERRVDPTRQLFATAPVVARASGATKDDVLRKLRTLAENDAELAEQIAAWEAAHPSGRKPGEPFQH*
Ga0070658_119450652	3300005327	Corn Rhizosphere	MIVLVSLEVDAEGTVHGMLQVERRVDPTRQLFATAPVVARASGATKDDVLRKLRALAENDTELAEQIAAWE
Ga0070683_1003438812	3300005329	Corn Rhizosphere	VLVSLEVDAEGTVHGMLQVERRVDPTRQLFATAPVVARASGATKDDVLRKLRSLAENDAELAEQITAWEAAHPSSRKPGEPYHH*
Ga0070680_1000304433	3300005336	Corn Rhizosphere	MRPHFLAFRRTLPGGMIVLVSLEVDAEGTVHGMLQVERRVDPTRQLFATAPVVARASGATKDEVLRKLRALAENDAELAEQIAAWEAAHPSSRKPGESWEQ*
Ga0070680_1018677161	3300005336	Corn Rhizosphere	MIVLVSLEVDAEGTVHGMLQVERRVDPTRQLFATAPVVARASGATKDDVLRKLRALAENDVELAEQIAAWEAAHPSSRQPGEPYQP*
Ga0070691_102534662	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MRPHFLAFRRTLPGGMIVLVSLEVDAEGTVHGMLQVERRVDPTRQLFATAPVVARASGATKDEVLRKLRALAENDAELAEQIAAW
Ga0070661_1008351042	3300005344	Corn Rhizosphere	MRPHFLAFRRTLPGGMIVLVSLEVDAEGTVHGMLQVERRVDPTRQLFATAPVVARASGATKDEVLRKLRTLAENDAELAEQIAAWEAAHPSGRKPGEPFQH*
Ga0070674_1013314882	3300005356	Miscanthus Rhizosphere	MRPHFLAFRRTLPGGMIVLVSLEIDTEGVVHGMLQVERRLDPTRQLFDTAPVVARASGRSKDEVLKRLRALAENDAELAVQLATWEAEHPSSRPPGQPWRP*
Ga0070673_1018741861	3300005364	Switchgrass Rhizosphere	MRPHFLAFRRTLPGGMIVLVSLEIDTEGVVHGRLQVERRLDPSRQLFDTAPVVARASGPSKDEVLKRLRTLAENDAELSAELARWEAAHPSSRPPGQPYRP*
Ga0070659_1001942633	3300005366	Corn Rhizosphere	MRPHFLAFRRTLPGGMIVLVSLEVDAEGTVHGMLQVERRVDPTRQLFATAPVVARASGATKDEVLRKLRALAENDAELAEQIAAWEAAHPSSRKPGEPFEP*
Ga0070714_1007819633	3300005435	Agricultural Soil	GMIVLVSLEVDADGTVHGMLQVERRVDPTRQLFATAPVVARASGATKDEVLRKLRALAENDAELAGQIAAWEAAHPSTRKPGEPYRQ*
Ga0070714_1008557472	3300005435	Agricultural Soil	MIVLVSLEVDAEGTVHGMLQVERRVDPTRQLFATAPVVARASGATKDEVLRKLRTLAENDAELAEQISAWEAAHPSARKPGEP
Ga0070713_1008189822	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MIVLVSLEVDAEGTVHGMLQVERRVDPTRQLFATAPVVARASGATKDEVLRKLRTLAENDAELAEQISAWEAAHPSARKPGEPYR*
Ga0070662_1020031811	3300005457	Corn Rhizosphere	MRPHFLAFRRTLPGGMIVLVSLEVDAEGTVHGMLQVERRVDPTRQLFATAPVVARASGATKDEVLRKLRALAENDAELAEQIAAWEAAHPSSRKPGEPWQQ*
Ga0070679_1000219003	3300005530	Corn Rhizosphere	LSRMRPHFLAFRRTLPGGMIVLVSLEVDAEGTVHGMLQVERRVDPTRQLFATAPVVARASGATKDEVLRKLRTLAENDAELAEQIAAWEAAHPSSRKPGEPWQQ*
Ga0070679_1003563403	3300005530	Corn Rhizosphere	MRPHFLAFRRTLPGGMIVLVSLEVDAEGTVHGMLQVERRVDPTRQLFATAPVVARASGATKDDVLRKLRALAENDAELGEQIAAWEAAHPSSRKPGERY*
Ga0070679_1009721291	3300005530	Corn Rhizosphere	DAEGTVHGMLQVERRVDPTRQLFATAPVVARASGATKDDVLRKLRALAENDAELGEQIAAWEAAHPSSRKPGERY*
Ga0070679_1014849892	3300005530	Corn Rhizosphere	GEFILSRMRPHFLAFRRTLPGGMIVLVSLEVDAEGTVHGMLQVERRVDPTRQLFATAPVVARASGATKDDVLRKLRALAENDVELAEQIAAWEAAHPSSRQPGEPYQP*
Ga0070684_1009003432	3300005535	Corn Rhizosphere	VHMRPHFLAFRRTLPGGMIVLVSLEVDAEGTVHGMLQVERRVDPTRQLFATAPVVARASGATKDDVLRKLRELAENDAELAEQISAWEAAHPSSRKPGEPFPQ*
Ga0068852_1000050048	3300005616	Corn Rhizosphere	MRPHFLAFRRTLPGGMIVLVSLEVDAEGTVHGMLQVERRVDPTRQLFATAPVVARASGATKDDVLRKLRTLAENDAELAEQIAAWEAAHPSGRKPGEPFQH*
Ga0068852_1010048911	3300005616	Corn Rhizosphere	GGMIVLVSLEVDAEGTVHGMLQVERRVDPTRQLFATAPVVARASGATKDDVLRKLRALAENDTELAEQIAAWEAAHPSSRKPGEPFPQ*
Ga0079221_104731472	3300006804	Agricultural Soil	MRPHFLAFRRTLPGGMIVLVSLEVDAEGTVHGMLQVERRVDPTRQLFATAPVVARASGATKDEVLRKLRTLAENDVELAEQIAAWEAAHPSARKPGEPYR*
Ga0104324_1332264	3300007820	Soil	MRPHFLAFRRSLPGGMIVLVSLEVDAEGTVHGMLQVERRLDPTRQLFATEPVVARASGPTKDDVLRQLRALAENDAELAAELAAWEAAHPSDRKPGEKF*
Ga0126315_110896451	3300010038	Serpentine Soil	LRQRAAAASFAVMRPHFLAFRRTLPGGMIVLVSLEIDPEGMVHGMLQVERRLDPSRQLFDTAPVVARASGKSKDEVLKRLRSLAENDAELAVELAAWEAAH
Ga0126311_118796811	3300010045	Serpentine Soil	MRPHFLAFRRTLPGGMIVLVSLTIDKEGTVHGVLQVERRLDPRRQLFDTAPVVARATGKSKDDVLGKLRTLAE
Ga0136218_10037163	3300010229	Soil	MIVLVSLAIDKEGVVHGMLQVERRLDPTRQLFDTAPVVARAEGRSKDDVLKKLRTLAENDAELSAKLAEWEAXXXXXXX
Ga0136635_103008922	3300012530	Polar Desert Sand	MRPHFLAFRRTLPGGMIVLVSLEIDQEGVVHGMLQVERRLDPSRQLFDTAPVVARASGTSKDDVLKQLRSLAENDAELAVQIAAWEAAHPSRRRADEGY*
Ga0136612_101093363	3300012680	Polar Desert Sand	MSPIARRRERSLGLRRWCSPASFAAMRPHYLAFRRTLPGGMIVFVSLEIDTEGVVHGMLQVERRVDPARQLFDTAPVVARASGANKDEVLKRLRALAENDAELARDLGAWEAAHPSSRRPSERYQP*
Ga0136611_101147952	3300012682	Polar Desert Sand	MRPHFLAFRRTLPGGMIVLVSLEIVSDTVVHGMLQVERRKDPARQLFGTAPVIARATAATKDEVLRQLRALADDDAEVATQIAAWEASHPPAGRSEGSPFG*
Ga0136611_101236384	3300012682	Polar Desert Sand	MRPHFLAFRRTLPGGVLLLVSLEIESDTVVHGMLQVERRKDPARQLFGTAPVIARATAATKDAVLRQLRALADDDAEVATQIAAWEAEHPPAGRSEGSPFG*
Ga0136611_104338662	3300012682	Polar Desert Sand	SPIARRRERSLGLRRWCSPASFAAMRPHYLAFRRTLPGGMIVFVSLEIDTEGVVHGMLQVERRVDPARQLFDTAPVVARASGANKDEVLKRLRALAENDAELARDLGAWEAAHPSSRRPSERYQP*
Ga0136611_108332461	3300012682	Polar Desert Sand	MRPHFLAFRRSLPGGMIVLVSLELVSDGVVHGMLQVERRKEPARQLFGTAPVIARASGATQDDVLRQLRALADDDAELAAQISAWEASHPPRGRGDGRALA*
Ga0164298_100532224	3300012955	Soil	MRPHFLAFRRTLPGGMIVLVSLSIDQEGVVHGMLQVERRLDPSRQLFDTAPVVARAEGRSKDDVLRKLRALAENDAELSAKLAEWEAAHPSHRKPGEPYRP*
Ga0164298_104988912	3300012955	Soil	MRPHFLAFRRTLPGGMIVLVSLEVDADGTVHGMLQVERRVDPTRQLFATAPVVARASGATKDEVLRKLRALAENDAELAGQIAAWEAAHPSTRKPGEPYRQ*
Ga0164299_106321402	3300012958	Soil	MRPHFLAFRRTLPGGMIVLVSLAIDKEGVVHGMLQVERRLYPPRELFDTAPVVARAEGRSKDDVLKKLRALAENDAELSAKLAEWEAAHPSHRKPGEPYRP*
Ga0164301_106059612	3300012960	Soil	MRPHFLAFRRTLPGGMIVLVSLSIDQEGVVHGMLQVERRLDPSRQLFDTAPVVARAEGRSKDDVLKKLRALAENDAELSAKLAEWEAAHPSHRKPGEPYRP*
Ga0164304_102500072	3300012986	Soil	MIVLVSLEVDAEGTVHGMLQVERRVDPTRQLFATAPVVARASGATKDDVLRKLRSLAENDAELAEQIAAWEAAHPSSRKPGEPYQP*
Ga0164304_110624632	3300012986	Soil	MRPHFLAFRRTLPGGMIVLVSLSIDQEGVVHGMLQVERRLDPSRQLFDTAPVVARAEGRSKDDVLKKLRALAE
Ga0164304_113687652	3300012986	Soil	MIVLVSLEVDAEGTVHGMLQVERRVDPTRQLFATAPVVARASGATKDDVLRQLRALAENDAELAEQITAWETAHPSSRRPGERFQQ*
Ga0157373_102102842	3300013100	Corn Rhizosphere	MRPHFLAFRRTLPGGMIVLVSLEVDAEGTVHGMLQVERRVDPTRQLFATAPVVARASGATKDEVLRKLRTLAENDAELAEQIAAWEAAHPSSRKPGEPWQQ*
Ga0157373_111353591	3300013100	Corn Rhizosphere	MIVLVSLEVDAEGTVHGMLQVERRVDPTRQLFATAPVVARASGATKDDVLRKLRALAENDTELAEQIAAWEAAHPSSRKPGEPFPQ*
Ga0157371_100662592	3300013102	Corn Rhizosphere	MRPHFLAFRRTLPGGMIVLVSREVDAEGTVHGMLQVERRVDPTRQLFATAPVVARASGATKDDVLRKLRTLAENDAELAEQIAAWEAAHPSGRKPGEPFQH*
Ga0157371_103771482	3300013102	Corn Rhizosphere	MRPHFLAFRRTLPGGLIVLVSLEVDAAGTVHGMLQVERRVDPTRQLFATAPVVARASGATKDDVLRQLRALAENDAELAEQITAWETAHPSSRRPGERFQQ*
Ga0157371_106786711	3300013102	Corn Rhizosphere	MRPHFLAFRRTLPGGMIVLVSLEVDAEGTVHGMLQVERRVDPTRQLFATAPVVARASGATKDEVLRKLRTLAENDAELAE
Ga0157369_102117914	3300013105	Corn Rhizosphere	LRHDEGEFILSRMRPHFLAFRRTLPGGMIVLVSLEVDAEGTVHGMLQVERRVDPTRQLFATAPVVARASGATKDDVLRKLRSLAENDAELAEQITAWEAAHPSSRKPGEPYHH*
Ga0157372_100437466	3300013307	Corn Rhizosphere	MIVLVSLEVDAEGTVHGMLQVERRVDPTRQLFATAPVVARASGATKDDVLRKLRSLAENDAELAEQITAWEAAHPSSRKPGEPYHH*
Ga0157372_106902072	3300013307	Corn Rhizosphere	MRPHFLAFRRTLPGGMIVLVSLEVDAEGTVHGMLQVERRVDPTRQLFATAPVVARASGATKDDVLRKLRALAENDSELAEQIAAWEAAHPSSRKPGEPWQH*
Ga0167646_10188643	3300015192	Glacier Forefield Soil	MRPHYLAFRRTLPGGMIVLVSLEIDPEGVVHGMLQVERRVDPSRQLFDTAHEVLKKLRTLAENDAELAVELARWEAAHPSQRRPGERFRP*
Ga0137418_112052882	3300015241	Vadose Zone Soil	MIVLVSLEIDKEGVVHGMLQVERRLDPTRQLFATAPVVAEASGSSKDDVLLKLRALAENDAELAVQIAAWEKAHPPQPQKRRQEH*
Ga0132255_1045856132	3300015374	Arabidopsis Rhizosphere	MRPHFLAFRRTLPGGMIVLVSLEVDAEGTVHGMLQVERRVDPTRQLFATAPVVARASGATKDEVLRKLRALAENDAELAEQIAAWEAAHPSSRKPGEPWQH*
Ga0180121_101101202	3300017695	Polar Desert Sand	MRPHFLAFRRTLPGGMIVLVSLEIDQEGVVHGMLQVERRLDPSRQLFDTAPVVARASGTSKDDVLKQLRSLAENDAELAVQIAAWEAAHPSRRRAGEGY
Ga0180121_103080532	3300017695	Polar Desert Sand	GLRRWSSPASFAAMRPHYLAFRRTLPGGMIVFVSLEIDNEGVVHGMLQVERRVDPARQLFETAPVVARASGANKDEVLKRLRALAENDAELARDLGAWEAAHLSSRRPSERYQP
Ga0184611_12902412	3300018067	Groundwater Sediment	MRPHFLAFRRTLPGGMIVLVSLEIDNEGVVHGRLQVERRLDPARQLFDTAPVVARASGRSKDEVLKRLRELAENDAELSAELSRW
Ga0193727_11857952	3300019886	Soil	MRPHFLAFRRTLPGGMIVLVSLEIDTEGVVHGMLQVERRLDPARQLFDTAPVVARASGSSKDEVLKRLRALAENDAELAVQLA
Ga0206353_115512451	3300020082	Corn, Switchgrass And Miscanthus Rhizosphere	MRPHFLAFRRTLPGGMIVLVSLEVDAEGTVHGMLQVERRVDPTRQLFATAPVVARASGATKDEVLRKLRTLAENDAELAEQIAAWEAAHPSGRKPGEPFQH
Ga0206353_119550282	3300020082	Corn, Switchgrass And Miscanthus Rhizosphere	VLVSLEVDAEGTVHGMLQVERRVDPTRQLFATAPVVARASGATKDDVLRKLRTLAENDAELAEQIAAWEAAHPSGRKPGEPFQH
Ga0193699_100006638	3300021363	Soil	MRPHFLAFRRTLPGGMIVLVSLEIDPEGVVHGMLQVERRLDPSRQLFDTAPVVARASGKNKDEVLKKLRALAENDAELAVKLAAWEADHPSSRQAGERS
Ga0193699_100290432	3300021363	Soil	MRPHFLAFRRTLPGGMIVLVSLEIDTEGVVHGMLQVERRLDPTRQLFDTAPIVARASGKNKDEVLKKLRTLAENDAELAVKLAAWEKAHPSQRIRGEPY
Ga0193699_100323872	3300021363	Soil	MRPHFLAFRRTLPGGMIVLVSLEIDTEGVVHGMLQVERRLDPARQLFDTAPVVARASGSSKDEVLKRLRTLAENDAELAVQLARWEAAHPSGRKPGERYQG
Ga0222622_101198772	3300022756	Groundwater Sediment	MRPHFLAFRRTLPGGMIVLVSLEIDNEGVVHGRLQVERRLDPARQLFDTAPVVARATGRSKDEVLKRLRELAENDAELSAELSRWEAAHPSSRPPGQSYRP
Ga0207705_100080643	3300025909	Corn Rhizosphere	VLVSLEVDAEGTVHGMLQVERRVDPTRQLFATAPVVARASGATKDDVLRKLRSLAENDAELAEQITAWEAAHPSSRKPGEPYHH
Ga0207705_100954283	3300025909	Corn Rhizosphere	VLVSLEVDAEGTVHGMLQVERRVDPTRQLFATAPVVARASGATKDDVLRKLRALAENDAELGEQIAAWEAAHPSSRKPGERY
Ga0207705_101357033	3300025909	Corn Rhizosphere	MRPHFLAFRRTLPGGMIVLVSLEVDAEGTVHGMLQVERRVDPTRQLFATAPVVARASGATKDDVLRKLRTLAENDAELAEQIAAWEAAHPSGRKPGEPFQH
Ga0207705_107215502	3300025909	Corn Rhizosphere	VLVSLEVDAEGTVHGMLQVERRVDPTRQLFATAPVVARASGATKDDVLRKLRELAENDAELAEQISAWEAAHPSSRKPGEPFPQ
Ga0207663_104330591	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MRPHFLAFRRTLPGGMIVLVSLEVDADGTVHGMLQVERRVDPTRQLFATAPVVARASGATKDEVLRKLRALAENDAELAGQIAAWEAAHPSTRKPGEPYRQ
Ga0207660_101747692	3300025917	Corn Rhizosphere	MRPHFLAFRRTLPGGMIVLVSLEVDAEGTVHGMLQVERRVDPTRQLFATAPVVARASGATKDEVLRKLRALAENDAELAEQIAAWEAAHPSSRKPGESWEQ
Ga0207660_107529002	3300025917	Corn Rhizosphere	MRPHFLAFRRTLPGGMIVLVSLEVDAEGTVHGMLQVERRVDPTRQLFATAPVVARASGATKDDVLRKLRALAENDAELAEQIAAWEAAHPSGRKPGEPFQH
Ga0207652_110792811	3300025921	Corn Rhizosphere	GLRHGGGEFILSRMRPHFLAFRRTLPGGMIVLVSLEVDAEGTVHGMLQVERRVDPTRQLFATAPVVARASGATKDDVLRKLRALAENDAELAEQIAAWEAAHPSSRKPGEPFEP
Ga0207652_110809141	3300025921	Corn Rhizosphere	PGGMIVLVSLEVDAEGTVHGMLQVERRVDPTRQLFATAPVVARASGATKDEVLRKLRALAENDTELAEQIAAWEAAHPSSRQPGEPFQQ
Ga0207700_110126781	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MIVLVSLEVDAEGTVHGMLQVERRVDPTRQLFATAPVVARASGATKDEVLRKLRTLAENDAELAEQISAWEAAHPSARKPGEPYR
Ga0207690_117144442	3300025932	Corn Rhizosphere	LRHAAGEVILSRMRPHFLAFRRTLPGGMIVLVSLEVDAEGTVHGMLQVERRVDPTRQLFATAPVVARASGATKDEVLRKLRTLAENDAELAEQIAAWEAAHPSSRKPGEPWQQ
Ga0207669_112814461	3300025937	Miscanthus Rhizosphere	LPGGMIVLVSLEIDTEGVVHGMLQVERRLDPTRQLFDTAPVVARASGRSKDEVLKRLRALAENDAELAVQLATWEAEHPSSRPPGQPWRP
Ga0207651_113549641	3300025960	Switchgrass Rhizosphere	TLPGGMIVLVSLEIDTEGVVHGRLQVERRLDPSRQLFDTAPVVARASGPSKDEVLKRLRTLAENDAELSAELARWEAAHPSSRPPGQPYRP
Ga0207639_100463335	3300026041	Corn Rhizosphere	MRPHFLAFRRTLPGGMIVLVSLEVDAEGTVHGMLQVERRVDPTRQLFATAPVVARASGATKDDVLRKLRSLAENDAELAEQITAWEAAHPSSRKPGEPYHH
Ga0207698_109774533	3300026142	Corn Rhizosphere	MIVLVSLEVDAEGTVHGMLQVERRVDPTRQLFATAPVVARASGATKDDVLRKLRALAENDTELAEQIAAWEAAHPSSRKPGEPFPQ
Ga0208984_10893662	3300027546	Forest Soil	MIVLVSLEIDTEGEVHGILQVERRLDPARQLFATAPVVASASGRSKDDVLRKLRTLAENDAELAVQIAAWERHPARGRSA
Ga0209796_100168203	3300027766	Agave	MRPHFLAFRRTLPGGMIVLVSLAIDPEGTVHGVLQVERRLDPRRQLFDTAPVVARATGKSKDDVLRKLRTLAENDAELAARLAEWEAAHPSKRPPGERYQP
Ga0307285_100289863	3300028712	Soil	MRPHFLAFRRTLPGGMIVLVSLEIDNEGVVHGRLQVERRLDPARQLFDTAPVVARATGRSKDEVLKRLRELAENDAELSAELSRWEAAHPSSRPPGQSY
Ga0307309_100899612	3300028714	Soil	MRPHFLAFRRTLPGGMIVLVSLEIDNEGVVHGRLQVERRLDPARQLFDTAPVVARASGRSKDEVLKRLRELAENDAELSAELSRWEAAHPSSRPPGQSYRP
Ga0307306_100604412	3300028782	Soil	MRPHFLAFRRTLPGGMIVLVSLSIDKEGTVHGELQVERRLDPRRQLFDTAPVVARATGKSKDDVLGKLRAMAENDAELAEKLAEWEAAHPSTRKPGEGYRA
Ga0307408_1024649192	3300031548	Rhizosphere	VSLEIDREGVVHGMLQVERRVDPTRQLFDTAPVVARATGRSKDEVLKKLRALAENDAELAVQIAAWEAAHPSRRKPGEPYPR
Ga0307412_121472951	3300031911	Rhizosphere	MRPHFLAFRRTLPGGMIVLVSLEIDREGVVHGMLQVERRVDPTRQLFDTAPVVARATGGSKDEVLKKLRALAENDA
Ga0308175_1000039473	3300031938	Soil	VLVSLEVDAEGTVHGMLQVERRVDPTRQLFATAPVVARASGATKDDVLRKLRALAENDAELGEQIAAWEAAHPSTRKPGDRY
Ga0308174_101088394	3300031939	Soil	MIVLVSLEVDAEGTVHGMLQVERRVDPTRQLFATAPVVARASGATKDDVLRQLRALAENDAELAEQITAWETAHPSSRQPGERFQQ
Ga0308174_115041902	3300031939	Soil	VLVSLEVDAEGTVHGMLQVERRVDPTRQLFATAPVVARASGATKDDVLRKLRALAENDTELAEQIAAWEAAHPSSRKPGEPFPQ
Ga0308176_119289591	3300031996	Soil	LSLMRPHFLAFRRVLPGGMIVLVSLEVDAEGTVHGMLQVERRVDPTRQLFATAPVVARASGATKDEVLKKLRALAENDAELAEQIAAWEATHPSSRKPGEPWPQ
Ga0326721_101770672	3300032080	Soil	VLVSLEVDAEGTVHGMLQVERRVDPTRQLFATAPVVARASGATKDDVLRKLRALAENDAELAEQIAAWEAAHPSSRKPGEPFDP
Ga0307415_1002303212	3300032126	Rhizosphere	MRPHFLAFRRTLPGGMIVLVSLEIDQEGVVHGMLQVERRVDPTRQLFDTAPVVARATGRSKDEVLKKLRALAENDAELAVQIAAWEAAHPSRRKPGEPYPR
Ga0372943_0505082_300_599	3300034268	Soil	MRPHFLAFRRTLPGGMIVLVSLEADKDGQVHGILQVERRVDPARQQLATAPVLARASGRSKDDVLRQLRALAENDSELAAQIAAWEIAHPSRRKPGERY
Ga0372946_0002349_4681_4941	3300034384	Soil	MIVLVSLEIDTEGVVHGMLQVERRVDPSRQLFDTAPVVARASGRSKDEVLKKLRTLAENDAELAREIAAWEAAHPSQRKPEEGYSP
Ga0372946_0272836_110_409	3300034384	Soil	MRPHFLAFRRTLPGGMIVLVSLEMAGEGLVHGVLQVERRRDPERQLFATAPVVAEASGSSKDEVLRKLRALAEDDEELSAHLAAWELEHPSPSRDGWTA
Ga0372946_0272923_94_393	3300034384	Soil	MRPHFLAFRRTLPGGMIVLVSLEIDKEGVVHGVLQVERRLDPSRQLFDTAPVVARTSGKSKDEVLKKLRTLAENDAELAVEIAAWEAAHPSRRTSGEKH
Ga0372946_0576350_334_543	3300034384	Soil	MEGEVHGILQVERRLNPARQLFATAPVVASASGRSKDEVLRRLRTLAENDAELAVQIAAWERGQGARRA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F100679

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences