Metagenome / Metatranscriptome Family F099234

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F099234
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	58 residues
Representative Sequence	VKVLLAVAAMLCLAVGATLGYVAVIALRRSEGVFLPAGYVALACLAAGVFLGRLALRG
Number of Associated Samples	79
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	60.40 %
% of genes near scaffold ends (potentially truncated)	38.83 %
% of genes from short scaffolds (< 2000 bps)	80.58 %
Associated GOLD sequencing projects	67
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.69

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (98.058 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere (11.650 % of family members)
Environment Ontology (ENVO)	Unclassified (55.340 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (72.816 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 59.30% β-sheet: 0.00% Coil/Unstructured: 40.70%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.69
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.69
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF13349	DUF4097	13.59
PF08242	Methyltransf_12	11.65
PF13345	Obsolete Pfam Family	9.71
PF12847	Methyltransf_18	2.91
PF12833	HTH_18	1.94
PF08241	Methyltransf_11	0.97
PF12769	PNTB_4TM	0.97
PF02233	PNTB	0.97
PF13489	Methyltransf_23	0.97
PF00512	HisKA	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG1282	NAD/NADP transhydrogenase beta subunit	Energy production and conversion [C]	0.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.06 %
Unclassified	root	N/A	1.94 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.06 %
Unclassified	root	N/A	1.94 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	98.06 %
Unclassified	root	N/A	1.94 %

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	80.58 %
Unclassified	root	N/A	1.94 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.97 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	80.58 %
Unclassified	root	N/A	1.94 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	17.48 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	8.74 %
Unclassified	root	N/A	1.94 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.97 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	17.48 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	8.74 %
Unclassified	root	N/A	1.94 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.97 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	17.48 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	8.74 %
Unclassified	root	N/A	1.94 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.97 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	17.48 %
unclassified Gemmatimonadaceae	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae	6.80 %
Gemmatirosa	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa	1.94 %
Unclassified	root	N/A	1.94 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.97 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	17.48 %
Gemmatimonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	6.80 %
Gemmatirosa kalamazoonesis	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	1.94 %
Unclassified	root	N/A	1.94 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.97 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_105802899	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1553	Open in IMG/M
3300000549\|LJQas_1036073	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	582	Open in IMG/M
3300001990\|JGI24737J22298_10111725	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	808	Open in IMG/M
3300004114\|Ga0062593_103286180	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	518	Open in IMG/M
3300005327\|Ga0070658_10009459	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	7835	Open in IMG/M
3300005327\|Ga0070658_10785160	All Organisms → cellular organisms → Bacteria	827	Open in IMG/M
3300005328\|Ga0070676_10144800	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1516	Open in IMG/M
3300005328\|Ga0070676_10334470	All Organisms → cellular organisms → Bacteria	1037	Open in IMG/M
3300005329\|Ga0070683_100014965	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	6804	Open in IMG/M
3300005329\|Ga0070683_100179494	All Organisms → cellular organisms → Bacteria	2009	Open in IMG/M
3300005330\|Ga0070690_101568610	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	533	Open in IMG/M
3300005331\|Ga0070670_101374867	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	647	Open in IMG/M
3300005331\|Ga0070670_101489453	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	621	Open in IMG/M
3300005338\|Ga0068868_100424175	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1152	Open in IMG/M
3300005339\|Ga0070660_100572991	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	943	Open in IMG/M
3300005353\|Ga0070669_101524306	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	581	Open in IMG/M
3300005355\|Ga0070671_100124664	All Organisms → cellular organisms → Bacteria	2168	Open in IMG/M
3300005366\|Ga0070659_101441897	All Organisms → cellular organisms → Bacteria	613	Open in IMG/M
3300005367\|Ga0070667_100125489	All Organisms → cellular organisms → Bacteria	2236	Open in IMG/M
3300005437\|Ga0070710_10539476	All Organisms → cellular organisms → Bacteria	804	Open in IMG/M
3300005455\|Ga0070663_100823495	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	797	Open in IMG/M
3300005535\|Ga0070684_101772610	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	583	Open in IMG/M
3300005543\|Ga0070672_100207344	All Organisms → cellular organisms → Bacteria	1641	Open in IMG/M
3300005564\|Ga0070664_101770340	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	586	Open in IMG/M
3300005578\|Ga0068854_100911944	All Organisms → cellular organisms → Bacteria	773	Open in IMG/M
3300005578\|Ga0068854_101594637	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	595	Open in IMG/M
3300005616\|Ga0068852_100490484	All Organisms → cellular organisms → Bacteria	1222	Open in IMG/M
3300005616\|Ga0068852_100852643	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	927	Open in IMG/M
3300005616\|Ga0068852_102091829	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	588	Open in IMG/M
3300005719\|Ga0068861_100700751	All Organisms → cellular organisms → Bacteria	941	Open in IMG/M
3300006031\|Ga0066651_10432640	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	699	Open in IMG/M
3300006606\|Ga0074062_10002529	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1416	Open in IMG/M
3300006804\|Ga0079221_10854685	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	661	Open in IMG/M
3300006953\|Ga0074063_13266131	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1201	Open in IMG/M
3300009174\|Ga0105241_11112199	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	745	Open in IMG/M
3300009177\|Ga0105248_10147976	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2650	Open in IMG/M
3300009177\|Ga0105248_10214486	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2168	Open in IMG/M
3300009553\|Ga0105249_11695991	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	704	Open in IMG/M
3300010397\|Ga0134124_10182131	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1895	Open in IMG/M
3300010400\|Ga0134122_13156673	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	516	Open in IMG/M
3300012212\|Ga0150985_107913584	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1038	Open in IMG/M
3300012212\|Ga0150985_123163225	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1271	Open in IMG/M
3300012469\|Ga0150984_116773643	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1131	Open in IMG/M
3300012925\|Ga0137419_11661608	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	544	Open in IMG/M
3300012955\|Ga0164298_10791340	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	677	Open in IMG/M
3300012957\|Ga0164303_10663238	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	697	Open in IMG/M
3300012958\|Ga0164299_11625878	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	510	Open in IMG/M
3300012985\|Ga0164308_11731510	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	581	Open in IMG/M
3300012986\|Ga0164304_10017146	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	3413	Open in IMG/M
3300012986\|Ga0164304_11397393	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	575	Open in IMG/M
3300012987\|Ga0164307_10095985	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1842	Open in IMG/M
3300013100\|Ga0157373_10751410	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	717	Open in IMG/M
3300013104\|Ga0157370_11674889	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	571	Open in IMG/M
3300013105\|Ga0157369_10822112	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	954	Open in IMG/M
3300013105\|Ga0157369_11508818	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	684	Open in IMG/M
3300013306\|Ga0163162_10750254	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	1095	Open in IMG/M
3300013308\|Ga0157375_10337886	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1671	Open in IMG/M
3300013308\|Ga0157375_10727098	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	1145	Open in IMG/M
3300015371\|Ga0132258_10066342	All Organisms → cellular organisms → Bacteria	8347	Open in IMG/M
3300015371\|Ga0132258_10177696	All Organisms → cellular organisms → Bacteria	5140	Open in IMG/M
3300015371\|Ga0132258_11018284	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2093	Open in IMG/M
3300015371\|Ga0132258_11273021	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	1859	Open in IMG/M
3300015373\|Ga0132257_101106625	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1000	Open in IMG/M
3300015374\|Ga0132255_102649970	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	766	Open in IMG/M
3300018476\|Ga0190274_10415957	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1310	Open in IMG/M
3300021445\|Ga0182009_10103796	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1300	Open in IMG/M
3300022756\|Ga0222622_10498640	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	870	Open in IMG/M
3300025321\|Ga0207656_10008926	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	3712	Open in IMG/M
3300025904\|Ga0207647_10321540	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	879	Open in IMG/M
3300025907\|Ga0207645_10015353	All Organisms → cellular organisms → Bacteria	5091	Open in IMG/M
3300025909\|Ga0207705_10007855	All Organisms → cellular organisms → Bacteria	7834	Open in IMG/M
3300025919\|Ga0207657_10146244	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1927	Open in IMG/M
3300025920\|Ga0207649_11121933	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	621	Open in IMG/M
3300025920\|Ga0207649_11506369	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	532	Open in IMG/M
3300025925\|Ga0207650_11069109	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	687	Open in IMG/M
3300025930\|Ga0207701_11588724	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	527	Open in IMG/M
3300025933\|Ga0207706_10740199	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	838	Open in IMG/M
3300025940\|Ga0207691_10158325	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1988	Open in IMG/M
3300025940\|Ga0207691_11613285	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	527	Open in IMG/M
3300025944\|Ga0207661_10229651	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1643	Open in IMG/M
3300025945\|Ga0207679_10836256	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	840	Open in IMG/M
3300025986\|Ga0207658_10072685	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2608	Open in IMG/M
3300025986\|Ga0207658_11546900	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	607	Open in IMG/M
3300026023\|Ga0207677_10630880	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	944	Open in IMG/M
3300026035\|Ga0207703_10533882	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1105	Open in IMG/M
3300026041\|Ga0207639_10270410	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1490	Open in IMG/M
3300026088\|Ga0207641_11264230	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	738	Open in IMG/M
3300026118\|Ga0207675_100903561	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	899	Open in IMG/M
3300026142\|Ga0207698_11320330	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	736	Open in IMG/M
3300028381\|Ga0268264_12297861	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	546	Open in IMG/M
3300028782\|Ga0307306_10126974	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	696	Open in IMG/M
3300031938\|Ga0308175_100126228	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2410	Open in IMG/M
3300031938\|Ga0308175_100311015	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1611	Open in IMG/M
3300031938\|Ga0308175_101421201	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	774	Open in IMG/M
3300031939\|Ga0308174_10060489	All Organisms → cellular organisms → Bacteria	2593	Open in IMG/M
3300031939\|Ga0308174_11639753	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	552	Open in IMG/M
3300031996\|Ga0308176_10024274	All Organisms → cellular organisms → Bacteria	4619	Open in IMG/M
3300031996\|Ga0308176_10317054	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1526	Open in IMG/M
3300031996\|Ga0308176_10849299	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	956	Open in IMG/M
3300031996\|Ga0308176_12372008	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	566	Open in IMG/M
3300033550\|Ga0247829_11546283	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	547	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	62.14%
Environmental	Environmental	37.86%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	62.14%
Terrestrial	Environmental → Terrestrial	35.92%
Aquatic	Environmental → Aquatic	1.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	35.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere	35.92%
Rhizoplane	Host-Associated → Plants → Rhizoplane	26.21%
Freshwater	Environmental → Aquatic → Freshwater	0.97%
Sediment	Environmental → Aquatic → Sediment	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	29.13%
Soil	Host-Associated → Plants → Rhizosphere → Soil	26.21%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	17.48%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.71%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	8.74%
Loam	Environmental → Terrestrial → Soil → Loam	6.80%
Ice	Environmental → Aquatic → Freshwater → Ice	0.97%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	26.21%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	17.48%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	14.56%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	9.71%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.71%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	8.74%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.80%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.91%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.94%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.97%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	11.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	9.71%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	9.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.74%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	7.77%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	5.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	5.83%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	4.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	4.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	3.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.91%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.94%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.94%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	0.97%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.97%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.97%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.97%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.97%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.97%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.97%
Quercus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Quercus Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.97%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000549	Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - LJQ_Illumina_Assembled	Host-Associated	Open in IMG/M
3300001990	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3	Host-Associated	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006606	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012682	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ223 (23.06)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028782	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_193	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1058028993	3300000364	Soil	VKVLLAVAAMLCLAVGATLGYVAVIALRRSEGVFLPAGYVALACLAAGVFLGRLALRG*
LJQas_10360731	3300000549	Quercus Rhizosphere	MPAAPSPLVRATLLLLAAALLVVGATLGYIAVIALRRSEGVFMPAGCVALAALAAGVWLLRLGLRG*
JGI24737J22298_101117252	3300001990	Corn Rhizosphere	VHALSGPLLRALLVVAALVCLAAGATLGYVSVIALRRSEGVFLPAGYVAVVCLALGTYLGRLALRG*
Ga0062593_1032861802	3300004114	Soil	LLRALLVVAAMVCLAVGATLGYVSVIALRRSEGVFLPAGYVALVSLAVGAYLGRLALRG*
Ga0070658_100094596	3300005327	Corn Rhizosphere	VVAALVCLAAGATLGYVSVIALRRSEGVFLPAGYVAVVCLALGTYLGRLALRG*
Ga0070658_107851603	3300005327	Corn Rhizosphere	GVQRRVSVAPLLRIVLWVVATALFAAGAALGYISVIALRRSEGVFLPAGYVSAACLVAGTLLVRWLLRG*
Ga0070676_101448002	3300005328	Miscanthus Rhizosphere	VKVLLAVAAMLCLAVGATLGYVAVIALRRSEGVFLPAGYVAVACLAAGVFLGRLALRS*
Ga0070676_103344703	3300005328	Miscanthus Rhizosphere	LVRALLAVAAVLCLAVGATLGYIAVIAVRRSEGVFLPAGYVSLACLAAGIYLGRLAMRG*
Ga0070683_1000149652	3300005329	Corn Rhizosphere	LLRALLVVAALVCLAAGATLGYVSVIALRRSEGVFLPAGYVAVVCLALGTYLGRLALRG*
Ga0070683_1001794943	3300005329	Corn Rhizosphere	VKALLAVAAMICLAVSATLGYVAVIALRRSEGVFLPAGYVALACLAAGVFLGRLALRS*
Ga0070690_1015686101	3300005330	Switchgrass Rhizosphere	VKVLLAVAAMLCLAVGATLGYVAVIALRRSEGVFLPAGYVAVACLAAGV
Ga0070670_1013748671	3300005331	Switchgrass Rhizosphere	LAAGATLGYVSVIALRRSEGVFLPAGYVAVVCLALGTYLGRLALRG*
Ga0070670_1014894531	3300005331	Switchgrass Rhizosphere	LAAAALLLAAGTVLGGLAVIALRRSEGVFLPAGYVALLCLAGGGALARYALRL*
Ga0068868_1004241751	3300005338	Miscanthus Rhizosphere	KVLLAVAAMLCLAVGATLGYVAVIALRRSEGVFLPVGYVAVACLAAGVFLGRLALRS*
Ga0070660_1005729912	3300005339	Corn Rhizosphere	LLRALLVVAAMVCLAVGGTLGYVSVIALRRSEGVFLPAGYVALVSLAVGAYLGRLALRG*
Ga0070669_1015243062	3300005353	Switchgrass Rhizosphere	VKVLLAVAAMLCLAVGATLGYVAVIALRRSEGVFLPAGYVAVACLAAGAFLGRLALRS*
Ga0070671_1001246643	3300005355	Switchgrass Rhizosphere	VKALLAVAAALCLAVGATLGYIAVIAVRRSEGVFLPAGYVSLACLAAGIYLGRLALRG*
Ga0070659_1014418972	3300005366	Corn Rhizosphere	LLRALLVVAALVCLAVGATLGYLSVIALRRSEGVFLPAGYVALVSLALGAYLGRLALRG*
Ga0070667_1001254892	3300005367	Switchgrass Rhizosphere	VRALLAVAAVLCLAVGATLGYIAVIAVRRSEGVFLPAGYVSLACLAAGIYLGRLAMRG*
Ga0070710_105394762	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	LLKLLLAVTAIVCLAVGATLGYVSVIALRRSEGVFLPAGYVAIACLAAGVYLGRLALRG*
Ga0070663_1008234952	3300005455	Corn Rhizosphere	VKVLLAVAAMICLVASATLGYVAVIALRRSEGVFLPAGYVALACLAAGVFLGRLALRG*
Ga0070679_1004795352	3300005530	Corn Rhizosphere	AGRPGGLPDPVHALSGPLLRALLVVAALVCLAAGATLGYVSVIALRRSEGVFLPAGYVAVVCLALGTYLGRLALRG*
Ga0070684_1017726102	3300005535	Corn Rhizosphere	LVKALLAVAAALCLAVGATLGYIAVIAVRRSEGVFLPAGYVSLACLAAGIYLGRLALRG*
Ga0070672_1002073442	3300005543	Miscanthus Rhizosphere	VRALLAVAAVLCLAVGATLGYIAVIAVRRSEGVFLPAGYVSLACLAAGIYLGRLALRG*
Ga0070664_1017703402	3300005564	Corn Rhizosphere	LVVGAVLGYVAAIALRRSEGVFLPAGYVALACLAAGVYLGRLALRG*
Ga0068854_1009119443	3300005578	Corn Rhizosphere	VKVLLAVAAMLCLAVGATLGYVAVIALRRSEGVFLPAGYVAVACLAAGVFLG
Ga0068854_1015946371	3300005578	Corn Rhizosphere	GGLPDPVHALSGTLLRALLVVAAMVCLAVGATLGYVSVIALRRSEGVFLPAGYVALVSLAVGAYLGRLALRG*
Ga0068852_1004904841	3300005616	Corn Rhizosphere	PGGLPDPVHALSGPLLRALLVVAAFVCLAAGATLGYVSVIALRRSEGVFLPAGYVAVVCLALGTYLGRLALRG*
Ga0068852_1008526432	3300005616	Corn Rhizosphere	VVAAMVCLAVGGTLGYVSVIALRRSEGVFLPAGYVALVSLAVGAYLGRLALRG*
Ga0068852_1020918292	3300005616	Corn Rhizosphere	AMLCLAVGATLGYVAVIALRRSEGVFLPAGYVAVACLAAGVFLGRLALRS*
Ga0068861_1007007511	3300005719	Switchgrass Rhizosphere	VKVLLAVAAMLCLAVGATLGYVAVIALRRSEGVFLPAGYVAVACLAAGVFLGRLALR
Ga0066651_104326401	3300006031	Soil	AALCLAVGATLGYVAVIALRRSEGVFLPAGYLAVACLAAGVYLGRLALRG*
Ga0074062_100025292	3300006606	Soil	VVAAGLCLAVGATLGYVAVIALRRSEGVFLPAGYVAVACLAAGVYLGRLALRG*
Ga0079221_108546851	3300006804	Agricultural Soil	LKVLLTVVAALLLAVGATLGYVSVIALRRSEGVFLPAGYVALACLAAGVYLGRLALRG*
Ga0074063_132661311	3300006953	Soil	GLPDPVHALSGTPLKVLLVVAAGLCLAVGATLGYVAVIALRRSEGVFLPAGYVAVACLAAGVYLGRLALRG*
Ga0105241_111121991	3300009174	Corn Rhizosphere	LVKALLAVAAVLCLAVGATLGYIAVIAVRRSEGVFLPAGYVSLACLAAGIYLGRLALRG*
Ga0105248_101479764	3300009177	Switchgrass Rhizosphere	LLAVAAMLCLAVGATLGYVAVIALRRSEGVFLPAGYVAVACLAAGVFLGRLALRS*
Ga0105248_102144862	3300009177	Switchgrass Rhizosphere	VAAVLCLAVGATLGYIAVIAVRRSEGVFLPAGYVSLACLAAGIYLGRLALRG*
Ga0105249_116959912	3300009553	Switchgrass Rhizosphere	AAMLCLAVGATLGYVAVIALRRSEGVFLPAGYVAVACLAAGVFLGRLALRS*
Ga0134124_101821312	3300010397	Terrestrial Soil	LLAVAAVLCLAVGATLGYIAVIAVRRSEGVFLPAGYVSLACLAAGIYLGRLALRG*
Ga0134122_131566731	3300010400	Terrestrial Soil	DPVHALSGTLVKALLAVAAVLCLAVGATLGYIAVIAVRRSEGVFLPAGYVAVACLAAGVFLGRLALRS*
Ga0150985_1079135843	3300012212	Avena Fatua Rhizosphere	LKALLVVAALLFLVVGATLGYVAVIALRRSVGVFLPAGYVAAACLAAGVYLGRLALRG*
Ga0150985_1231632252	3300012212	Avena Fatua Rhizosphere	LLRALLVVVAMVCLAVGATLGYVSVIALRRSEGVFLPAGYVALVSLAVGAYLGRLALRG*
Ga0150984_1167736431	3300012469	Avena Fatua Rhizosphere	GGLPDPVHALSGSLLKAMLVVAAAVLLVIGATLGYVAAIALRRNEGVFLPAGYVALACLAAGAYLGRLALRG*
Ga0136611_102712242	3300012682	Polar Desert Sand	MRALLVVLAFLLVAAGLGLGYLAVIAARRSEGVFLPAGYVAAACLAAAYFIGRVALRS*
Ga0137419_116616081	3300012925	Vadose Zone Soil	LTVSGLLGYIAVVALRRSEGVFMPAGYVALACLAGGVFLMRLAARS*
Ga0164298_107913402	3300012955	Soil	LLRALLVVGAMGCLAVGATLGSVSVIALRRSEGVVLRAGYVALVSLAVGAYLGRLALRG*
Ga0164303_106632382	3300012957	Soil	AAMLCLAVGATLGFVAVIALRRSEGVFLPAGYVAVACLAAGVFLGRLALRS*
Ga0164299_116258781	3300012958	Soil	AVAAMICLGVGVTLGYIAVIALRRSEGVFLPAGYVALACLAAGVYLGRLALRG*
Ga0164308_117315102	3300012985	Soil	VAAVLCLAVGATLGYIAVIAVRRSEGVFLPAGYVSLACLAAGIYLGQLALRG*
Ga0164304_100171462	3300012986	Soil	VKVLLAVAAMLCLAVGATLGYVAVIALRRSEGVFLPAGYVAVACLAAGVVLGRLALRS*
Ga0164304_113973932	3300012986	Soil	PVHALSGTLLRALLVVAAMVCLAVGATLGYVSVIALRRSEGVFLPAGYVALVSLAVGAYLGRLALRG*
Ga0164307_100959852	3300012987	Soil	LLRALLVVGAMGCLAVGATLGSVSVIALRRSEGVFLPAGYVALVSLAVGAYLGRLALRG*
Ga0157373_107514101	3300013100	Corn Rhizosphere	ALLVVAALVCLAVGATLGYLSVIALRRSEGVFLPAGYVALVSLAVGAYLGRLALRG*
Ga0157370_116748892	3300013104	Corn Rhizosphere	LLKVLLVVAAALCLAAGATLGYVSVIALRRSEGVFLPAGYVALACLAAGVYLGRLALRG*
Ga0157369_108221122	3300013105	Corn Rhizosphere	LLRALLVVAALVCLAAGATLGYVSVIALRRSEGVFLPAGYVAVVCLALGTYLGRLALRE*
Ga0157369_115088181	3300013105	Corn Rhizosphere	LVKALLVVAAVFCLGVGAMLGYIAVIAVRRSEGVFLPAGYVSLACLAAGIYLGRLALRG*
Ga0163162_107502541	3300013306	Switchgrass Rhizosphere	VAAVLCLAVGATLGYIAVIAVRRSEGVFLPAGYVAVACLAAGVFLGRLALRS*
Ga0157375_103378861	3300013308	Miscanthus Rhizosphere	HALSGTLVRALLAVAAVLCLAVGATLGYIAVIAVRRSEGVFLPAGYVSLACLAAGIYLGRLALRG*
Ga0157375_107270983	3300013308	Miscanthus Rhizosphere	VAAVLCLAVGATLGDIAVIAVRRSEGVFLPAGYVSLACLAAGIYLGRLALRG*
Ga0132258_100663424	3300015371	Arabidopsis Rhizosphere	LKVFLLVAAALCLAVGATLGYVAVIALRRSEGVFLPAGYVAVACLAAGVYLGRLALRG*
Ga0132258_101776962	3300015371	Arabidopsis Rhizosphere	MLVGAAAVLLVIGATLGYVAAIALRRSEGVFLPAGYVALACLAAGVYLGRLALRG*
Ga0132258_110182842	3300015371	Arabidopsis Rhizosphere	LLAVAAALCLAVGATLGYIAVIAVRRSEGVFLPAGYVSLACLAAGIYLGRLAMRG*
Ga0132258_112730211	3300015371	Arabidopsis Rhizosphere	VLLLATGAVLGGLAVIALRRSEGVFLPAGYVALICLAGGGALARYALRL*
Ga0132257_1011066252	3300015373	Arabidopsis Rhizosphere	LKVFLVVAAALCLAVGATLGYVAVIALRRSEGVFLPAGYVAVACLAAGVYLGRLALRG*
Ga0132255_1026499702	3300015374	Arabidopsis Rhizosphere	IAAGVVLGGLAVIALRRSEGVFLPAGYVALICLAGGGALVRYALRL*
Ga0190274_104159571	3300018476	Soil	LLLVAAAALLVAGAVLGGLAVIALRRSEGVFLPAGYVALLCLAGGGALARYALRL
Ga0182009_101037961	3300021445	Soil	GTETPLKVLLAVAAALCLAVGATLGYVSVIALRRSEGVFLPAGYVALACLAAGFYLGRLVLRG
Ga0222622_104986401	3300022756	Groundwater Sediment	LKVVLVVAAAVLLMIGATLGYVAAIALRRSEGVFLPAGYVALACLAAGVYLGRLALRG
Ga0207656_100089266	3300025321	Corn Rhizosphere	VVAALACLAAGATLGYVSVIALRRSEGVFLPAGYVAVVCLALGTYLGRLALRG
Ga0207647_103215401	3300025904	Corn Rhizosphere	LLRALLVVAALVCLAAGATLGYVSVIALRRSEGVFLPAGYVAVVCLALGTYLGRLALRG
Ga0207645_100153537	3300025907	Miscanthus Rhizosphere	VRALLAVAAVLCLAVGATLGYIAVIAVRRSEGVFLPAGYVSLACLAAGIYLGRLALRG
Ga0207705_100078559	3300025909	Corn Rhizosphere	VVAALVCLAAGATLGYVSVIALRRSEGVFLPAGYVAVVCLALGTYLGRLALRG
Ga0207657_101462443	3300025919	Corn Rhizosphere	MVCLAVGGTLGYVSVIALRRSEGVFLPAGYVALVSLAVGAYLGRLALRG
Ga0207649_111219332	3300025920	Corn Rhizosphere	LLRALLVVAALVCLAVGATLGYLSVIALRRSEGVFLPAGYVALVSLALGAYLGRLALRG
Ga0207649_115063692	3300025920	Corn Rhizosphere	LLRALLVVAAMVCLAVGGTLGYVSVIALRRSEGVFLPAGYVALVSLAVGAYLGRLALRG
Ga0207650_110691091	3300025925	Switchgrass Rhizosphere	LLRALLVVAAFVCLAAGATLGYVSVIALRRSEGVFLPAGYVAVVCLALGTYLGRLALRG
Ga0207701_115887241	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	TLVKVLLAVAAMLCLAVGATLGYVAVIALRRSEGVFLPAGYVALACLAAGVFLGRLALRS
Ga0207706_107401992	3300025933	Corn Rhizosphere	VRALLAVAAVLCLAVGATLGYIAVIAVRRSEGVFLPAGYVSLACLAAGIYLGRLTLRG
Ga0207691_101583252	3300025940	Miscanthus Rhizosphere	VKALLAVAAVLCLAVGATLGYIAVIAVRRSEGVFLPAGYVSLACLAAGIYLGRLALRG
Ga0207691_116132851	3300025940	Miscanthus Rhizosphere	LVVAALVCLAAGATLGYVSVIALRRSEGVFLPAGYVAVVCLALGTYLGRLALRG
Ga0207661_102296512	3300025944	Corn Rhizosphere	VKALLAVAAMICLAVSATLGYVAVIALRRSEGVFLPAGYVALACLAAGVFLGRLALRS
Ga0207679_108362561	3300025945	Corn Rhizosphere	PGRLPHPVHALSASPLRVVLAVAASVLLVVGAVLGYVAAIALRRSEGVFLPAGYVALACLAAGVYLGRLALRG
Ga0207658_100726851	3300025986	Switchgrass Rhizosphere	VRALLAVAAVLCLAVGATLGYIAVIAVRRSEGVFLPAGYVSLACLAAGIYL
Ga0207658_115469001	3300025986	Switchgrass Rhizosphere	VRALLAVAAVLCLAVGATLGYIAVIAVRRSEGVFLPAGYVSLACLAAGIYLGRLAMRG
Ga0207677_106308802	3300026023	Miscanthus Rhizosphere	RLPEPVHALSGTLVKVLLAVAAMLCLAVGATLGYVAVIALRRSEGVFLPVGYVAVACLAAGVFLGRLALRS
Ga0207703_105338822	3300026035	Switchgrass Rhizosphere	VRALLAVAAVLCLAAGATLGYIAVIAVRRSEGVFLPAGYVSLACLAAGIYLGRLALRG
Ga0207639_102704102	3300026041	Corn Rhizosphere	VKVLLAVAAMICLVASATLGYVAVIALRRSEGVFLPAGYVALACLAAGVFLGRLALRG
Ga0207641_112642302	3300026088	Switchgrass Rhizosphere	FVCLAAGATLGYVSVIALRRSEGVFLPAGYVAVVCLALGTYLGRLALRG
Ga0207675_1009035613	3300026118	Switchgrass Rhizosphere	MLVGAAAVLLVIGATLGYVAAIALRRSEGVFLPAGYVALACLAAGVYLGRLALRG
Ga0207698_113203302	3300026142	Corn Rhizosphere	VLLAVAAMLCLAVGATLGYVAVIALRRSEGVFLPVGYVAVACLAAGVFLGRLALRS
Ga0268264_122978611	3300028381	Switchgrass Rhizosphere	VKVLLAVAAMLCLAVGATLGYVAVIALRRSEGVFLPAGYVAVACLAAGVFLGRLALRS
Ga0307306_101269742	3300028782	Soil	VVVLGLALLGAGGVLGYVAVIALRRSEGVFLPAGYVGVALLAGGAYLLRLAARG
Ga0308175_1001262282	3300031938	Soil	VLLAVTAMICLAVGATLGYLAVIALRRSEGVFLPAGYVSLVFLAAGVYLGRLALRD
Ga0308175_1003110153	3300031938	Soil	VKALLVVAAVLCLGVGAMLGYIAVIAVRRSEGVFLPAGYLSLACLAAGIYLGRLALRG
Ga0308175_1014212011	3300031938	Soil	LLLPVAALLLVGGAVLGYIAVVALRRSEGVFLPAGYVALFCLAGGAFLVRWIFRQ
Ga0308174_100604893	3300031939	Soil	VKALLAVAAALCLAVGATLGCIAVIAVRRSEGVFLPAGYLSLACLAAGIYLGRLALRG
Ga0308174_116397532	3300031939	Soil	VFLVVAAVLCLAVGSTLGYVAVIALRRSEGVFLPAGYVAVGCLAAGLYLGRLALRG
Ga0308176_100242741	3300031996	Soil	VLLAVTAMICLAVGATLGYVAVIALRRSEGVFLPAGYVSLVFLAAGVYLGRLALRD
Ga0308176_103170543	3300031996	Soil	VVAAMLCLAVGATLGYVSVIALRRSEGVFLPAGYVAVACLAAGVYLGRLALRS
Ga0308176_108492992	3300031996	Soil	LKVLLAVAAALCLAVGATLGYVSVIALRRSEGVFLPAGYVALACLAAGLYLGRLVLRG
Ga0308176_123720081	3300031996	Soil	VKALLVVAAVLCLGVGAMLGYIAVIAVRRSEGVFLPAGYVSLACLAAGIYLVRLALRG
Ga0247829_115462832	3300033550	Soil	VLLAVAAMLCLAVGATLGFVAVIALRRSEGVFLPAGYVAVACLAAGVFLGRLALRS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F099234

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences