3300000236: Groundwater microbial communities from subsurface biofilms in sulfidic aquifier in Frasassi Gorge, Italy, sample from two redox zones- FS08_3

Overview

Basic Information

• IMG/M Taxon OID: 3300000236
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063446 | Gp0053572 | Ga0026216
• Sample Name: Groundwater microbial communities from subsurface biofilms in sulfidic aquifier in Frasassi Gorge, Italy, sample from two redox zones- FS08_3
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 181303868
• Sequencing Scaffolds: 9
• Novel Protein Genes: 11
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	3
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Groundwater Microbial Communities From Subsurface Biofilms In Sulfidic Aquifier In Frasassi Gorge, Italy
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Groundwater → Cave Water → Groundwater → Groundwater Microbial Communities From Subsurface Biofilms In Sulfidic Aquifier In Frasassi Gorge, Italy

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater biome → aquifer → biofilm material
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Fissure Spring (below trough), Frasassi Caves, Italy
• Coordinates
  • Lat. (^o): 43.383333
  • Long. (^o): 12.95
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001506	Metagenome / Metatranscriptome	681	Y
F002525	Metagenome / Metatranscriptome	552	Y
F009160	Metagenome / Metatranscriptome	322	Y
F016728	Metagenome / Metatranscriptome	245	Y
F044511	Metagenome / Metatranscriptome	154	Y
F065810	Metagenome / Metatranscriptome	127	Y
F079740	Metagenome / Metatranscriptome	115	Y
F084884	Metagenome / Metatranscriptome	112	Y
F101438	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
TB_FS08_3DRAFT_1007525	All Organisms → cellular organisms → Bacteria	3053
TB_FS08_3DRAFT_1012274	All Organisms → Viruses → Predicted Viral	2008
TB_FS08_3DRAFT_1022901	All Organisms → cellular organisms → Bacteria	1130
TB_FS08_3DRAFT_1031398	All Organisms → cellular organisms → Bacteria	847
TB_FS08_3DRAFT_1031481	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	845
TB_FS08_3DRAFT_1033919	All Organisms → cellular organisms → Bacteria → Proteobacteria	794
TB_FS08_3DRAFT_1044869	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	640
TB_FS08_3DRAFT_1045100	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae	637
TB_FS08_3DRAFT_1061972	Not Available	515

Sequences

Scaffold ID	Protein ID	Family	Sequence
TB_FS08_3DRAFT_1007525	TB_FS08_3DRAFT_10075253	F009160	MRVKAPQPQARLLGRAGESVTRGDRRERELGFESPFPPLTARPNKRRDDHSTLTDESSPLRGAPNERQNAAKTLTPVGHPFITPPERRSAPTTVRQARNGVRYGLEQVSAFIGIRNXLFVL*
TB_FS08_3DRAFT_1009056	TB_FS08_3DRAFT_10090563	F016728	VHSGNLLLIYSQPTVCVTCVWAGVDSAWEQEKLEAWKMLENAAESHTSGARFVGTLLTLRLTC*
TB_FS08_3DRAFT_1012274	TB_FS08_3DRAFT_10122742	F044511	MAYGIVRCPTKRAPDAGDSGAIPSIFLRLSIFPVGRRSAARPSAGNANR*
TB_FS08_3DRAFT_1022901	TB_FS08_3DRAFT_10229011	F002525	CVWAGVDNVWEQEKLEARKILENAAESHTSGARFVGSF*
TB_FS08_3DRAFT_1031398	TB_FS08_3DRAFT_10313981	F084884	QSVHPTLGILARFQAFFYASAFSQSDGVPPPDPARVTQTIGTTRA*
TB_FS08_3DRAFT_1031481	TB_FS08_3DRAFT_10314812	F001506	LYQQEILKLISKLIEKENVKETNLMNRILYEIRCKCNEEISITKKRKSTNRSEGKPLLYPNPTELTSKTFQIKYDKPLSSIAKFLLNSFQNKYLYYAIDDLLYLLNSNITERDNLLALLYSPVLSLQNNLSINFFDIWIQEIYISEIVTRNKFLTNPNQNVESVTYITIKLLYRTKIPVKKQESLW*
TB_FS08_3DRAFT_1033919	TB_FS08_3DRAFT_10339192	F101438	MMFRQKLFACVLMLALAPAWADSSVPAVPEKQTARFEQLLDFRHNVDLVRHPQQALDLADAMSDPEFLVAAMVMSANPEVWLKAMERAGAPGVPQNLAQAASPEMLADWFYSSIDPRFQQAILSRMLDPKKAQRWMQSMSDPRFCMPALAVVSPETPMQWVKVTADGRVMQSMQPWFDPTTYMNWMRLPTPSAAKKSSDKMARPAAYSWKPLQRY*
TB_FS08_3DRAFT_1044869	TB_FS08_3DRAFT_10448692	F002525	AGVDNAWEQEKPEARKMLVXRAESHTSGARFVSQPAR*
TB_FS08_3DRAFT_1045100	TB_FS08_3DRAFT_10451001	F065810	YYAIDDILYSFQSNPNERDNLLAILYSPVLSLQNNFSINFFDIWIDEIYIHEVSKINKFLKNDSSKSEQCSYITIKLLYKSGIPFKKPDPLW*
TB_FS08_3DRAFT_1057647	TB_FS08_3DRAFT_10576473	F079740	MRTQKIDFPDRQTLCIFPDKREDLAEAITELQLGGNFPVIVLIGGGIDEQEAEA
TB_FS08_3DRAFT_1061972	TB_FS08_3DRAFT_10619722	F084884	PALGILARFKAFFYASAFFQSDGVPPPAPARVTQTVGTTLAKLKFQ*