3300000122: Marine microbial communities from chronically polluted sediments in Tierra del Fuego - site OR sample ARG 04_12.3m

Overview

Basic Information

• IMG/M Taxon OID: 3300000122
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063447 | Gp0053465 | Ga0026504
• Sample Name: Marine microbial communities from chronically polluted sediments in Tierra del Fuego - site OR sample ARG 04_12.3m
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 90812053
• Sequencing Scaffolds: 24
• Novel Protein Genes: 24
• Associated Families: 21

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfosarcina → Desulfosarcina ovata	1
Not Available	11
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon RBG_13_31_8	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	3
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine → Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → intertidal zone → marine sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Sediment (saline)

Location Information

• Location: OR site, Ushuaia Bay, Tierra del Fuego, Argentina
• Coordinates
  • Lat. (^o): -54.80407
  • Long. (^o): -68.288208
  • Alt. (m): N/A
  • Depth (m): 12.3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001926	Metagenome / Metatranscriptome	616	Y
F005564	Metagenome / Metatranscriptome	396	Y
F005817	Metagenome / Metatranscriptome	389	N
F008695	Metagenome / Metatranscriptome	329	Y
F012505	Metagenome / Metatranscriptome	280	Y
F016664	Metagenome / Metatranscriptome	245	Y
F023593	Metagenome / Metatranscriptome	209	N
F033962	Metagenome / Metatranscriptome	176	N
F045104	Metagenome / Metatranscriptome	153	Y
F046627	Metagenome	151	N

Associated Scaffolds

Scaffold	Taxonomy	Length
TDF_OR_ARG04_123mDRAFT_c1000202	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales	4600
TDF_OR_ARG04_123mDRAFT_c1000547	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfosarcina → Desulfosarcina ovata	3343
TDF_OR_ARG04_123mDRAFT_c1003581	Not Available	1509
TDF_OR_ARG04_123mDRAFT_c1003818	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon RBG_13_31_8	1459
TDF_OR_ARG04_123mDRAFT_c1003845	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1453
TDF_OR_ARG04_123mDRAFT_c1003872	All Organisms → Viruses → Predicted Viral	1448
TDF_OR_ARG04_123mDRAFT_c1006322	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1135
TDF_OR_ARG04_123mDRAFT_c1008072	All Organisms → cellular organisms → Bacteria → Proteobacteria	1002
TDF_OR_ARG04_123mDRAFT_c1008307	Not Available	989
TDF_OR_ARG04_123mDRAFT_c1011480	Not Available	837

Sequences

Scaffold ID	Protein ID	Family	Sequence
TDF_OR_ARG04_123mDRAFT_c1000202	TDF_OR_ARG04_123mDRAFT_10002026	F082105	MAAPLMHEPPRCAGQLNATAQRAVAGTVMRIDSADSGRDNEKKYQK*
TDF_OR_ARG04_123mDRAFT_c1000547	TDF_OR_ARG04_123mDRAFT_10005474	F045104	VLLDTLTQHQRTLTLANTALAHTTLLDWLVEHNAHLVIPDTLLAAPCLNQASQIPVAVWVAPSPLLEAIRLAAGLTTRPPKQTAALLARWPTAPALRPFLRRLTASRPLDQLSLL*
TDF_OR_ARG04_123mDRAFT_c1003581	TDF_OR_ARG04_123mDRAFT_10035815	F033962	MTELKQYMIDNKRIKVAQWNKERQGNHCQGFTQKEFEQSMEVDRIKSRTRRTHSKGNHWNFNDTNNRELFTK*
TDF_OR_ARG04_123mDRAFT_c1003818	TDF_OR_ARG04_123mDRAFT_10038182	F062246	MERKLREISGSLVVTIPKQVCDLYGFKDGDMLSIETIGVGELRLRKIL*
TDF_OR_ARG04_123mDRAFT_c1003845	TDF_OR_ARG04_123mDRAFT_10038452	F074896	MKKFLLIASIILLLAFVTTNLLSIGFNNNLKDAHAVENAFNSFSVNFMFEKYLPQESYYDGPQNNPSRLIEPFKLLLLGVGLIFLSLIGRKTFKS*
TDF_OR_ARG04_123mDRAFT_c1003872	TDF_OR_ARG04_123mDRAFT_10038722	F012505	MSKFMIYNNDVVTFILKKTLDEAKQWAIMYCDHSDEIIVREVSDIEYKY*
TDF_OR_ARG04_123mDRAFT_c1006322	TDF_OR_ARG04_123mDRAFT_10063223	F076109	MEVLFKILFVIAVMASIFCLCIFLGNLYILFQKNEFPDIEDV*
TDF_OR_ARG04_123mDRAFT_c1008072	TDF_OR_ARG04_123mDRAFT_10080721	F005564	PSKRQVVTEKDMHKLIIGLMVIFFLGDPGLQTLAWLGEMKLYIVAAAIALVSIPFVVSQLDE*
TDF_OR_ARG04_123mDRAFT_c1008307	TDF_OR_ARG04_123mDRAFT_10083072	F080236	LRSIGKNKNTMNNIYDKQFEIYLVKKGFNLNTISLQECLTQIKIWKKNIANA*
TDF_OR_ARG04_123mDRAFT_c1011480	TDF_OR_ARG04_123mDRAFT_10114801	F005564	MIEPSKQQVVTETDMHKVFIGLMVIFFLGDPSLQTLAWLGEMKLYIVAAAVAMVSIPFVISQLDG*
TDF_OR_ARG04_123mDRAFT_c1012411	TDF_OR_ARG04_123mDRAFT_10124111	F084254	KQIEQRDKLSMQLRRIPAFITQPVVIEILAEVIRQSKKHPHADQVASALAIRGLPIAENDVMTVFDQYDIEKKTPDSH*
TDF_OR_ARG04_123mDRAFT_c1012686	TDF_OR_ARG04_123mDRAFT_10126862	F074896	MQKTIKMKKFLLIASIILLLGFVATNLLSIAFNTDLKDAYAVENAFNSFSVNFLLEKYLPQESYYDGPQNNPSRFIEPFKLLLLGVGLIFLSLLGRKTFKR*
TDF_OR_ARG04_123mDRAFT_c1017946	TDF_OR_ARG04_123mDRAFT_10179461	F074891	MSAVTPDVIVDRKPGKKRRKGLAALRKLRNALARRKLEEMREEELLKEQIYDVFADPEDSE*
TDF_OR_ARG04_123mDRAFT_c1018379	TDF_OR_ARG04_123mDRAFT_10183791	F056896	SYLSDEICGECLEHAVFDEEEDSPMGETCRNGKQWAKCDCC*
TDF_OR_ARG04_123mDRAFT_c1020438	TDF_OR_ARG04_123mDRAFT_10204382	F084254	IPVFISEPMVIEILAEVIRQSKRHPRADQVASALAMRGLPIAENDVMTVFDHYDIEKKIPDSH*
TDF_OR_ARG04_123mDRAFT_c1020660	TDF_OR_ARG04_123mDRAFT_10206601	F016664	MDQVVKNMPILVEATNTVEIIVHISEGLDDRQRNNLVVALEEDDGIVSAEFCYLRNHLILVRYDMDKYSSQDVLASVRSLNVDARLIGPV*
TDF_OR_ARG04_123mDRAFT_c1021541	TDF_OR_ARG04_123mDRAFT_10215412	F008695	MIKERRIEKVVHEWCEKDDRWVYIEYNNQRKIVGLNFMQGDDYQYFKLRWACNDQGLMDFYNXMVYTFPIEKASVNTLEFINKVMWAYHQAIVSYEDHTEVK*
TDF_OR_ARG04_123mDRAFT_c1021970	TDF_OR_ARG04_123mDRAFT_10219702	F046627	ILMSFLKGDIGEELWVNHLKEMGHEDLETAPKRKFYDWDIKSSINGKTYTFEVKYDSKAYWWAKRRKTPDKPNLYIEFKNTNKNEDSGIKASKATYYIYMLKDEERVDAYVFEREGLLSHLLSVTYKTAGNSATGDNNALGWIPPLDSLVTQKFFLQKVSLKV*
TDF_OR_ARG04_123mDRAFT_c1026924	TDF_OR_ARG04_123mDRAFT_10269241	F001926	VRHEDIPXINNPKIRFPVLEGDKLMKEVLNGGYNVHPVPPPNSEIKERIRKRYERKRIKIEKLLTLGY
TDF_OR_ARG04_123mDRAFT_c1027018	TDF_OR_ARG04_123mDRAFT_10270183	F023593	MSKMNEIDEIAQYQADVILETLKEQVEWSIADYDLNGDDYXNLRDYTVYQTVIKLLEQVDLVDVDNYKQNTIISG*
TDF_OR_ARG04_123mDRAFT_c1027400	TDF_OR_ARG04_123mDRAFT_10274002	F082775	MSXPDIXYPAIFVFSMLXIGLLLTMWEFSRLHKRQQQKVENDKRFNGLDSRVYRENVRNVS*
TDF_OR_ARG04_123mDRAFT_c1028332	TDF_OR_ARG04_123mDRAFT_10283323	F005817	KKGLEDNKVRYPSMTNDIEFLLTQIFYYDDLTVRQVLNIFVFSDMEYLDRDSFSWRYGEDVFEIENNVA*
TDF_OR_ARG04_123mDRAFT_c1029241	TDF_OR_ARG04_123mDRAFT_10292411	F105203	MQQTKHAEQMVNRFRELVEDAGDSLSTNHYNELTLIIEAGLDTALLENLARVTEKLTSLAHDIQHNAEFFD*
TDF_OR_ARG04_123mDRAFT_c1031242	TDF_OR_ARG04_123mDRAFT_10312421	F085722	MLRIAFVSVCYALLVIGQIGCSNPHKEAARASTESSKAEAAVHNEKAKILEDYRKCLNKNKSNEQACESYKRALDSM*