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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 2162886015 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0046710 | Gp0052459 | Ga0010948 |
| Sample Name | Grass soil microbial communities from Rothamsted Park, UK - FO (Mercury 0.02g/kg) assembled |
| Sequencing Status | Finished |
| Sequencing Center | 454 Life Sciences |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 50520744 |
| Sequencing Scaffolds | 29 |
| Novel Protein Genes | 29 |
| Associated Families | 29 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria | 6 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 4 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria | 2 |
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia | 4 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | 1 |
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 8 |
| Not Available | 4 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Grass Soil Microbial Communities From Rothamsted Park Plot 3D, Harpenden, Uk |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil → Grass Soil Microbial Communities From Rothamsted Park Plot 3D, Harpenden, Uk |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | grassland biome → land → grassland soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | United Kingdom: Rothamsted, Harpenden | |||||||
| Coordinates | Lat. (o) | 51.804241 | Long. (o) | -0.372114 | Alt. (m) | N/A | Depth (m) | 0 to .21 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001546 | Metagenome / Metatranscriptome | 673 | Y |
| F002573 | Metagenome / Metatranscriptome | 547 | Y |
| F003595 | Metagenome / Metatranscriptome | 478 | Y |
| F003760 | Metagenome / Metatranscriptome | 470 | Y |
| F005652 | Metagenome / Metatranscriptome | 394 | Y |
| F008057 | Metagenome / Metatranscriptome | 340 | Y |
| F011611 | Metagenome / Metatranscriptome | 289 | Y |
| F011806 | Metagenome / Metatranscriptome | 287 | Y |
| F012876 | Metagenome / Metatranscriptome | 276 | Y |
| F014459 | Metagenome / Metatranscriptome | 263 | Y |
| F016679 | Metagenome / Metatranscriptome | 245 | Y |
| F022707 | Metagenome | 213 | Y |
| F023153 | Metagenome / Metatranscriptome | 211 | Y |
| F024436 | Metagenome / Metatranscriptome | 206 | N |
| F031221 | Metagenome / Metatranscriptome | 183 | N |
| F031630 | Metagenome | 182 | N |
| F042363 | Metagenome / Metatranscriptome | 158 | Y |
| F050528 | Metagenome | 145 | Y |
| F050598 | Metagenome | 145 | Y |
| F052838 | Metagenome / Metatranscriptome | 142 | Y |
| F063932 | Metagenome | 129 | Y |
| F065882 | Metagenome / Metatranscriptome | 127 | Y |
| F067973 | Metagenome | 125 | Y |
| F073614 | Metagenome | 120 | N |
| F086355 | Metagenome | 111 | N |
| F090794 | Metagenome | 108 | Y |
| F090906 | Metagenome | 108 | Y |
| F095029 | Metagenome / Metatranscriptome | 105 | Y |
| F101638 | Metagenome / Metatranscriptome | 102 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| FOassembled-_contig00002 | All Organisms → cellular organisms → Bacteria | 160135 | Open in IMG/M |
| FOassembled-_contig08174 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 1387 | Open in IMG/M |
| FOassembled-_contig08744 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 1337 | Open in IMG/M |
| FOassembled-_contig13900 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 1004 | Open in IMG/M |
| FOassembled-_contig14613 | All Organisms → cellular organisms → Bacteria | 969 | Open in IMG/M |
| FOassembled-_contig14814 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia | 943 | Open in IMG/M |
| FOassembled-_contig15095 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | 961 | Open in IMG/M |
| FOassembled-_contig15265 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia | 951 | Open in IMG/M |
| FOassembled-_contig16208 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 908 | Open in IMG/M |
| FOassembled-_contig16852 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 886 | Open in IMG/M |
| FOassembled-_contig17548 | Not Available | 860 | Open in IMG/M |
| FOassembled-_contig17705 | Not Available | 865 | Open in IMG/M |
| FOassembled-_contig20427 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 780 | Open in IMG/M |
| FOassembled-_contig20840 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 752 | Open in IMG/M |
| FOassembled-_contig21518 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia | 749 | Open in IMG/M |
| FOassembled-_contig22274 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia | 712 | Open in IMG/M |
| FOassembled-_contig22472 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 719 | Open in IMG/M |
| FOassembled-_contig23786 | Not Available | 681 | Open in IMG/M |
| FOassembled-_contig24970 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 647 | Open in IMG/M |
| FOassembled-_contig24974 | All Organisms → cellular organisms → Bacteria | 632 | Open in IMG/M |
| FOassembled-_contig25864 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 626 | Open in IMG/M |
| FOassembled-_contig26618 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 612 | Open in IMG/M |
| FOassembled-_contig26775 | Not Available | 608 | Open in IMG/M |
| FOassembled-_contig26827 | All Organisms → cellular organisms → Bacteria | 601 | Open in IMG/M |
| FOassembled-_contig26985 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 599 | Open in IMG/M |
| FOassembled-_contig27305 | All Organisms → cellular organisms → Bacteria | 585 | Open in IMG/M |
| FOassembled-_contig27368 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 593 | Open in IMG/M |
| FOassembled-_contig27903 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 564 | Open in IMG/M |
| FOassembled-_contig28870 | All Organisms → cellular organisms → Bacteria | 553 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| FOassembled-_contig00002 | FOassembled-_0002.00003440 | F063932 | MVIQTNPEVFSGRLPVHTVTSIDRSRGIVTLSGSDGTSLNVLLNSWGTIEATQPVIGTRVQLLEND |
| FOassembled-_contig08174 | FOassembled-_0174.00001260 | F052838 | MPGESSAVPTDDRVGLNHRETSPPTGPAIGTTNPQEPVAAVEAQATRPVLLENCKLVAKREDLRL |
| FOassembled-_contig08744 | FOassembled-_0744.00000820 | F090906 | DYSDFRNALYAGTDGFTAGNEPLYQLDANILQVFVSIWF |
| FOassembled-_contig13900 | FOassembled-_0900.00001270 | F095029 | MHADSAATAELPQLNLPQDLITEVSRRGAKLKTDYRIEAMKPSLFGRLVEKLLGKSVR |
| FOassembled-_contig14613 | FOassembled-_0613.00001330 | F073614 | LGRDQLRSADISWREARTNSNALSHGTVKDAGSAEEQCAGADRADSPDTSSYLSEPSNYFNGYLIFLDGGATGYKQGVYLAPHLPKRLMRCDSQSTVRHNCRARRGGHDFDCVDGKSARVPSAEHFGSPCKDLEWSDEIEDLSS |
| FOassembled-_contig14814 | FOassembled-_0814.00001360 | F003760 | MKPKQIFISILAVLFVFPLMGTFAQQAPNSGSIEVITTFVYPGTVNVTS |
| FOassembled-_contig15095 | FOassembled-_0095.00001930 | F023153 | MAIKRRILSVTAVALASVVTAHAQTPVDVGGTFQQIGQAANAWIPAIMHEAAFLFYVLATLDFAWGAPSFLRESDFNGLFLSLIKKLLVISF |
| FOassembled-_contig15265 | FOassembled-_0265.00001390 | F065882 | MLFGKVFATFGAAPSLALGLLSALYFIASLCVYVSL |
| FOassembled-_contig16208 | FOassembled-_0208.00001620 | F031630 | MIERIKNALAEVPRATASSLHYLYLARIPFLGWVTLFGLPLLAITVGRPLVLAAYDLASSGEAFFVGIAFGLAGGSIYFTAHVITNLCSNRFRLEIIRIVQSRIDKVWASAILLALLINILVGASASKPVLSYSGRVASAMVAGMLVAFAGTFVAEAISSSFPKNPVYRNLVWFGIKIGLRKQKGYLRPVSAGVETNDPANWKYEEGHVRAASYTFIVIVAYCIITGKQIAPLVALMLLLSLWVLVLAGVTFFWDRYRLPLLVILLVYF |
| FOassembled-_contig16852 | FOassembled-_0852.00001340 | F090794 | LRVRSALIYIVDDSWCRPHFSSDSYRFRLPHGRKRGLDFRSSCDGSGPFVPARRAVDDGDDSLRRATGGGHASASDGNAFPSAADGDVLDRHFATTPAGRDATVNCSYATAERDAAEFLV |
| FOassembled-_contig17548 | FOassembled-_0548.00001440 | F022707 | MKLLSRRALDQLGTLQANVQELAAHRNTALRMFIASRSTTTPVAQREFWLEFAWVDQEYRIAVRRLAQFCTDHQDSSHTRWRANTVCR |
| FOassembled-_contig17705 | FOassembled-_0705.00001400 | F086355 | MYISHEQRPAELKALTDLFSARAGASLLKSRALKSMSRQLEDAHDFGLTWKEIWEALRECGYAGSYRQFAAMTRKLTSPAQEMRRRTKDLSPPLVEK |
| FOassembled-_contig20427 | FOassembled-_0427.00001740 | F003595 | GVTAPGYSKTRVEEKATTFDSEKIWQAVLAKIPEQKGFVRNSTSAAHVLGVEGRNFILGFAPGDKPMMDILGTPANRKFVETLLREISEKDWTLKLTVSEELASKTTAAQKDSPSHDFKDEPLIQDAIELFNARVTQEK |
| FOassembled-_contig20840 | FOassembled-_0840.00001470 | F008057 | ELKDIGKPVVWAFPEVVVCLDCGTAEFAVPEAELRQLSKGDAAAAG |
| FOassembled-_contig21518 | FOassembled-_0518.00001610 | F031221 | MKWISRLLMLIVLALGYMCLQSAEGPGRLLFVCYNLALLLLWGLHELQHPLDEKPKASDGKL |
| FOassembled-_contig22274 | FOassembled-_0274.00001670 | F014459 | MKGMTMKPEKNLSVVPGESRGIWAAIAKLMRRRSVIDIVERFQTKHALQEERETKNFHPSTNGAVATGIIR |
| FOassembled-_contig22472 | FOassembled-_0472.00001570 | F067973 | MDPLIAQTESGLRLKVLTSTRRKGFFAHLKGAQQVHFANNITEPGKCKVTSIHPPGVGHVRSKHDVIMYTYEAFRLQRRLAKLH |
| FOassembled-_contig23786 | FOassembled-_0786.00001600 | F016679 | MKLLDSGIRVFTLAQGTGVRWLKEELGSLSVRTPLSEGCLEELVRDADNAAWQTVAASTGETSYLTHLRQQLVLQATLVHRWTGSDDKLAADDASAQAFVRIARKYALPRPWKLSDPVAVESRRLRPSNWKWATAIEARSVA |
| FOassembled-_contig24970 | FOassembled-_0970.00001860 | F011806 | VCDSLPAIHERVRQCRMFAARLILTETGEALVKPEFALGELLFFKSEHEKTDAEAVQDWESEGGASTHLHEEAFAEALRRLTSNRKSQ |
| FOassembled-_contig24974 | FOassembled-_0974.00001650 | F011611 | MGRMRWILILCAWTIVGLLFAVRRIGREGTGYHVSWVIAGALEFVYWYVWAAYTPLV |
| FOassembled-_contig25864 | FOassembled-_0864.00001680 | F002573 | PGPAVPLTQSSERTGIETKWFSVKGRVVGLKVEADGDLHIALQDATGDKPGIVVVEVPAKPQWREIRNRVFSWTRTRFPFHTSSAKKLTLTQTPVITVTGKAFFDVGHSLKDQKSNRRSHLPGYSAREIHPVMKLEVAE |
| FOassembled-_contig26618 | FOassembled-_0618.00001710 | F005652 | MKSFACLLFLVPTLALAQDYLGHNHPRVWIYANGNDYISNVVGDIIASRSRGETRVDRANNYAREQAYADAVANLAALRAYQAATERAEMDRLTRMENSRAEPLKPPSAEFLATQKRFESKP |
| FOassembled-_contig26775 | FOassembled-_0775.00001750 | F012876 | KTTPQAAALALSVLMTLATVAGMNGLATKQYAKADSLAMAPYGQTHVAVQHVTIVGHRAN |
| FOassembled-_contig26827 | FOassembled-_0827.00001940 | F042363 | FASNAFAVLRSPYPSKPSPPDRIITIIIGQDKRDLVRTTHRESK |
| FOassembled-_contig26985 | FOassembled-_0985.00001820 | F024436 | LRLKSELEECLAKIEAMTAQAKVSQFVALGQLEGKPSRYPRFRWIFPIFYTMTTAGFITLIVYRLVTGEAMK |
| FOassembled-_contig27305 | FOassembled-_0305.00002070 | F101638 | VKVREDDKNLFLLVTDGTEVSAQISQSRACVKDSDAVRIGKRDLQAGGVAAEFLKTGIADGDGSARTVKLELHTMFS |
| FOassembled-_contig27368 | FOassembled-_0368.00002070 | F050598 | MRKETRKDLALLIITSIASVIGMTSVFLACRPLAWIAILVSDSYLFLVLLFAAILSDDHGFATRHSWITSLFPRRTAGLFLLILLLLSIVSGFAGLYVGAEVFSSSKTPLDALYISFFTLAFTDFSPKPGYGQFVVIGQLVS |
| FOassembled-_contig27903 | FOassembled-_0903.00001730 | F001546 | VDVSRWDEKAGLRRDAVRSQVIDVLEAQEIKETGNEEG |
| FOassembled-_contig28870 | FOassembled-_0870.00001900 | F050528 | MLAYCGRPPSASFCDRFPYIGPRYARETIAEICSMGVALATAIISQTGS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |