NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F050528

Metagenome Family F050528

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F050528
Family Type Metagenome
Number of Sequences 145
Average Sequence Length 47 residues
Representative Sequence MLAYCGRPPSASFCDRFPYIGPRYARETIAEICSMGVALATAIISQTGS
Number of Associated Samples 82
Number of Associated Scaffolds 145

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 91.55 %
% of genes near scaffold ends (potentially truncated) 64.83 %
% of genes from short scaffolds (< 2000 bps) 71.72 %
Associated GOLD sequencing projects 68
AlphaFold2 3D model prediction Yes
3D model pTM-score0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (70.345 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil
(15.172 % of family members)
Environment Ontology (ENVO) Unclassified
(40.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(48.276 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Fibrous Signal Peptide: No Secondary Structure distribution: α-helix: 40.26%    β-sheet: 0.00%    Coil/Unstructured: 59.74%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.38
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 145 Family Scaffolds
PF01738DLH 2.07
PF13561adh_short_C2 1.38
PF02775TPP_enzyme_C 1.38
PF00107ADH_zinc_N 1.38
PF05036SPOR 1.38
PF01351RNase_HII 1.38
PF06325PrmA 1.38
PF02541Ppx-GppA 1.38
PF01963TraB_PrgY_gumN 1.38
PF14031D-ser_dehydrat 1.38
PF00753Lactamase_B 1.38
PF02687FtsX 1.38
PF00590TP_methylase 1.38
PF13365Trypsin_2 1.38
PF00501AMP-binding 0.69
PF01943Polysacc_synt 0.69
PF00108Thiolase_N 0.69
PF13278Obsolete Pfam Family 0.69
PF02602HEM4 0.69
PF02699YajC 0.69
PF07075DUF1343 0.69
PF00005ABC_tran 0.69
PF00128Alpha-amylase 0.69
PF05227CHASE3 0.69
PF01075Glyco_transf_9 0.69
PF02803Thiolase_C 0.69
PF01895PhoU 0.69
PF01336tRNA_anti-codon 0.69
PF02321OEP 0.69
PF13502AsmA_2 0.69
PF09339HTH_IclR 0.69
PF00116COX2 0.69
PF13193AMP-binding_C 0.69
PF01425Amidase 0.69
PF08245Mur_ligase_M 0.69
PF13426PAS_9 0.69
PF13349DUF4097 0.69
PF08281Sigma70_r4_2 0.69
PF13183Fer4_8 0.69
PF00400WD40 0.69
PF02423OCD_Mu_crystall 0.69
PF02652Lactate_perm 0.69
PF04754Transposase_31 0.69
PF13714PEP_mutase 0.69
PF03776MinE 0.69
PF03472Autoind_bind 0.69
PF11906DUF3426 0.69
PF12700HlyD_2 0.69
PF00285Citrate_synt 0.69
PF13546DDE_5 0.69
PF12773DZR 0.69
PF13738Pyr_redox_3 0.69
PF01618MotA_ExbB 0.69
PF13380CoA_binding_2 0.69
PF01914MarC 0.69
PF01207Dus 0.69
PF02416TatA_B_E 0.69
PF13544Obsolete Pfam Family 0.69
PF04348LppC 0.69
PF04011LemA 0.69
PF00072Response_reg 0.69
PF12627PolyA_pol_RNAbd 0.69
PF00293NUDIX 0.69
PF12221HflK_N 0.69
PF00282Pyridoxal_deC 0.69
PF00127Copper-bind 0.69
PF07859Abhydrolase_3 0.69
PF05977MFS_3 0.69
PF00440TetR_N 0.69
PF05768Glrx-like 0.69
PF07992Pyr_redox_2 0.69
PF00486Trans_reg_C 0.69
PF00676E1_dh 0.69
PF01346FKBP_N 0.69
PF03150CCP_MauG 0.69
PF00117GATase 0.69
PF01694Rhomboid 0.69
PF00528BPD_transp_1 0.69
PF13361UvrD_C 0.69
PF01408GFO_IDH_MocA 0.69
PF06580His_kinase 0.69
PF01726LexA_DNA_bind 0.69
PF03602Cons_hypoth95 0.69
PF01380SIS 0.69
PF12833HTH_18 0.69
PF00106adh_short 0.69
PF00294PfkB 0.69
PF01218Coprogen_oxidas 0.69
PF04413Glycos_transf_N 0.69
PF13435Cytochrome_C554 0.69
PF02104SURF1 0.69
PF02696SelO 0.69
PF00041fn3 0.69
PF01751Toprim 0.69
PF00848Ring_hydroxyl_A 0.69
PF11839Alanine_zipper 0.69
PF01323DSBA 0.69
PF02788RuBisCO_large_N 0.69
PF00593TonB_dep_Rec 0.69
PF00990GGDEF 0.69
PF013675_3_exonuc 0.69
PF09363XFP_C 0.69
PF00933Glyco_hydro_3 0.69
PF12710HAD 0.69
PF04751DUF615 0.69
PF04613LpxD 0.69
PF03734YkuD 0.69

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 145 Family Scaffolds
COG0248Exopolyphosphatase/pppGpp-phosphohydrolaseSignal transduction mechanisms [T] 2.76
COG2890Methylase of polypeptide chain release factorsTranslation, ribosomal structure and biogenesis [J] 2.07
COG1538Outer membrane protein TolCCell wall/membrane/envelope biogenesis [M] 1.38
COG1039Ribonuclease HIIIReplication, recombination and repair [L] 1.38
COG2264Ribosomal protein L11 methylase PrmATranslation, ribosomal structure and biogenesis [J] 1.38
COG2197DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domainsTranscription [K] 1.38
COG1916Pheromone shutdown protein TraB, contains GTxH motif (function unknown)Function unknown [S] 1.38
COG3897Protein N-terminal and lysine N-methylase, NNT1/EFM7 familyPosttranslational modification, protein turnover, chaperones [O] 1.38
COG0183Acetyl-CoA acetyltransferaseLipid transport and metabolism [I] 1.38
COG0164Ribonuclease HIIReplication, recombination and repair [L] 1.38
COG4638Phenylpropionate dioxygenase or related ring-hydroxylating dioxygenase, large terminal subunitInorganic ion transport and metabolism [P] 1.38
COG1858Cytochrome c peroxidasePosttranslational modification, protein turnover, chaperones [O] 0.69
COG2972Sensor histidine kinase YesMSignal transduction mechanisms [T] 0.69
COG1862Protein translocase subunit YajCIntracellular trafficking, secretion, and vesicular transport [U] 0.69
COG1850Ribulose 1,5-bisphosphate carboxylase, large subunit, or a RuBisCO-like proteinCarbohydrate transport and metabolism [G] 0.69
COG2095Small neutral amino acid transporter SnatA, MarC familyAmino acid transport and metabolism [E] 0.69
COG2242Precorrin-6B methylase 2Coenzyme transport and metabolism [H] 0.69
COG2265tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD familyTranslation, ribosomal structure and biogenesis [J] 0.69
COG1826Twin-arginine protein secretion pathway components TatA and TatBIntracellular trafficking, secretion, and vesicular transport [U] 0.69
COG2423Ornithine cyclodeaminase/archaeal alanine dehydrogenase, mu-crystallin familyAmino acid transport and metabolism [E] 0.69
COG2814Predicted arabinose efflux permease AraJ, MFS familyCarbohydrate transport and metabolism [G] 0.69
COG1587Uroporphyrinogen-III synthaseCoenzyme transport and metabolism [H] 0.69
COG3028Ribosomal 50S subunit-associated protein YjgA, DUF615 familyTranslation, ribosomal structure and biogenesis [J] 0.69
COG3034Murein L,D-transpeptidase YafKCell wall/membrane/envelope biogenesis [M] 0.69
COG3107Outer membrane lipoprotein LpoA, binds and activates PBP1aCell wall/membrane/envelope biogenesis [M] 0.69
COG3118Chaperedoxin CnoX, contains thioredoxin-like and TPR-like domains, YbbN/TrxSC familyPosttranslational modification, protein turnover, chaperones [O] 0.69
COG3275Sensor histidine kinase, LytS/YehU familySignal transduction mechanisms [T] 0.69
COG3280Maltooligosyltrehalose synthaseCarbohydrate transport and metabolism [G] 0.69
COG3346Cytochrome oxidase assembly protein ShyY1Posttranslational modification, protein turnover, chaperones [O] 0.69
COG3876Exo-beta-N-acetylmuramidase YbbC/NamZ, DUF1343 familyCell wall/membrane/envelope biogenesis [M] 0.69
COG4263Nitrous oxide reductaseInorganic ion transport and metabolism [P] 0.69
COG5464Recombination-promoting DNA endonuclease RpnC/YadDReplication, recombination and repair [L] 0.69
COG074216S rRNA G966 N2-methylase RsmDTranslation, ribosomal structure and biogenesis [J] 0.69
COG0076Glutamate or tyrosine decarboxylase or a related PLP-dependent proteinAmino acid transport and metabolism [E] 0.69
COG0154Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidaseTranslation, ribosomal structure and biogenesis [J] 0.69
COG02585'-3' exonuclease Xni/ExoIX (flap endonuclease)Replication, recombination and repair [L] 0.69
COG02961,4-alpha-glucan branching enzymeCarbohydrate transport and metabolism [G] 0.69
COG0366Glycosidase/amylase (phosphorylase)Carbohydrate transport and metabolism [G] 0.69
COG0372Citrate synthaseEnergy production and conversion [C] 0.69
COG0397Protein adenylyltransferase (AMPylase) SelO/YdiU (selenoprotein O)Posttranslational modification, protein turnover, chaperones [O] 0.69
COG0408Coproporphyrinogen-III oxidase HemH, oxygen-dependentCoenzyme transport and metabolism [H] 0.69
COG0545FKBP-type peptidyl-prolyl cis-trans isomerasePosttranslational modification, protein turnover, chaperones [O] 0.69
COG05672-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymesEnergy production and conversion [C] 0.69
COG0657Acetyl esterase/lipaseLipid transport and metabolism [I] 0.69
COG0695GlutaredoxinPosttranslational modification, protein turnover, chaperones [O] 0.69
COG0705Membrane-associated serine protease, rhomboid familyPosttranslational modification, protein turnover, chaperones [O] 0.69
COG1704Magnetosome formation protein MamQ, lipoprotein antigen LemA familyCell wall/membrane/envelope biogenesis [M] 0.69
COG0851Septum formation topological specificity factor MinECell cycle control, cell division, chromosome partitioning [D] 0.69
COG0859ADP-heptose:LPS heptosyltransferaseCell wall/membrane/envelope biogenesis [M] 0.69
COG1044UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferaseCell wall/membrane/envelope biogenesis [M] 0.69
COG1071TPP-dependent pyruvate or acetoin dehydrogenase subunit alphaEnergy production and conversion [C] 0.69
COG109223S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmITranslation, ribosomal structure and biogenesis [J] 0.69
COG1376Lipoprotein-anchoring transpeptidase ErfK/SrfKCell wall/membrane/envelope biogenesis [M] 0.69
COG1472Periplasmic beta-glucosidase and related glycosidasesCarbohydrate transport and metabolism [G] 0.69
COG15193-deoxy-D-manno-octulosonic-acid transferaseCell wall/membrane/envelope biogenesis [M] 0.69
COG1523Pullulanase/glycogen debranching enzymeCarbohydrate transport and metabolism [G] 0.69
COG0042tRNA-dihydrouridine synthaseTranslation, ribosomal structure and biogenesis [J] 0.69
COG1620L-lactate permeaseEnergy production and conversion [C] 0.69
COG1622Heme/copper-type cytochrome/quinol oxidase, subunit 2Energy production and conversion [C] 0.69


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms71.03 %
UnclassifiedrootN/A28.97 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2162886015|FOassembled-_contig28870All Organisms → cellular organisms → Bacteria553Open in IMG/M
3300003320|rootH2_10009794All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria2253Open in IMG/M
3300005260|Ga0074072_1000550All Organisms → cellular organisms → Bacteria → Proteobacteria24251Open in IMG/M
3300005329|Ga0070683_100838151All Organisms → cellular organisms → Bacteria → Proteobacteria882Open in IMG/M
3300005335|Ga0070666_10416927All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium967Open in IMG/M
3300005367|Ga0070667_100727808All Organisms → cellular organisms → Bacteria → Proteobacteria919Open in IMG/M
3300005367|Ga0070667_101385198All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium659Open in IMG/M
3300005435|Ga0070714_100536395All Organisms → cellular organisms → Bacteria1119Open in IMG/M
3300005436|Ga0070713_100181269All Organisms → cellular organisms → Bacteria → Proteobacteria1893Open in IMG/M
3300005436|Ga0070713_100260922All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae1583Open in IMG/M
3300005436|Ga0070713_101657788All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria621Open in IMG/M
3300005439|Ga0070711_100803819Not Available798Open in IMG/M
3300005439|Ga0070711_101916556All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium521Open in IMG/M
3300005529|Ga0070741_10011993All Organisms → cellular organisms → Bacteria → Proteobacteria15813Open in IMG/M
3300005529|Ga0070741_10018247All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria11395Open in IMG/M
3300005529|Ga0070741_10021747All Organisms → cellular organisms → Bacteria → Proteobacteria9933Open in IMG/M
3300005529|Ga0070741_10059932All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria4447Open in IMG/M
3300005529|Ga0070741_10060190All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria4433Open in IMG/M
3300005529|Ga0070741_10128531All Organisms → cellular organisms → Bacteria2596Open in IMG/M
3300005548|Ga0070665_100002654All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria19446Open in IMG/M
3300005548|Ga0070665_100012682All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae8488Open in IMG/M
3300005548|Ga0070665_100022794All Organisms → cellular organisms → Bacteria → Proteobacteria6304Open in IMG/M
3300005548|Ga0070665_100031690All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales5320Open in IMG/M
3300005548|Ga0070665_100036447All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae4947Open in IMG/M
3300005548|Ga0070665_100053034All Organisms → cellular organisms → Bacteria4067Open in IMG/M
3300005548|Ga0070665_102227927Not Available551Open in IMG/M
3300005563|Ga0068855_100787309All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Zoogloeaceae → Thauera → unclassified Thauera → Thauera sp. 631012Open in IMG/M
3300005563|Ga0068855_102039692Not Available579Open in IMG/M
3300005591|Ga0070761_10598320All Organisms → cellular organisms → Bacteria686Open in IMG/M
3300005591|Ga0070761_10650894All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria658Open in IMG/M
3300005591|Ga0070761_10706041Not Available632Open in IMG/M
3300005591|Ga0070761_10790602All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria597Open in IMG/M
3300005602|Ga0070762_10036431All Organisms → cellular organisms → Bacteria → Proteobacteria2661Open in IMG/M
3300005602|Ga0070762_10043318All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria2459Open in IMG/M
3300005602|Ga0070762_10154025All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1377Open in IMG/M
3300005602|Ga0070762_10195096Not Available1236Open in IMG/M
3300005602|Ga0070762_11177514Not Available530Open in IMG/M
3300005610|Ga0070763_10168335All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1154Open in IMG/M
3300005614|Ga0068856_100895064Not Available906Open in IMG/M
3300005614|Ga0068856_102432904All Organisms → cellular organisms → Bacteria → Proteobacteria531Open in IMG/M
3300005616|Ga0068852_101281087All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → genistoids sensu lato → core genistoids → Genisteae → Lupinus → Lupinus albus754Open in IMG/M
3300005712|Ga0070764_10000616All Organisms → cellular organisms → Bacteria14213Open in IMG/M
3300005712|Ga0070764_10227962All Organisms → cellular organisms → Bacteria → Proteobacteria1054Open in IMG/M
3300005841|Ga0068863_101719351All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria637Open in IMG/M
3300005841|Ga0068863_102035990All Organisms → cellular organisms → Bacteria584Open in IMG/M
3300005842|Ga0068858_100734055Not Available962Open in IMG/M
3300005842|Ga0068858_100989481All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium824Open in IMG/M
3300005842|Ga0068858_101290434All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium718Open in IMG/M
3300005843|Ga0068860_100666276All Organisms → cellular organisms → Bacteria → Proteobacteria1049Open in IMG/M
3300006175|Ga0070712_101349684All Organisms → cellular organisms → Bacteria → Proteobacteria622Open in IMG/M
3300006176|Ga0070765_100656771All Organisms → cellular organisms → Bacteria990Open in IMG/M
3300006176|Ga0070765_100973936All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria802Open in IMG/M
3300006176|Ga0070765_101715818Not Available590Open in IMG/M
3300006893|Ga0073928_10283712All Organisms → cellular organisms → Bacteria → Proteobacteria1251Open in IMG/M
3300006893|Ga0073928_10612266Not Available768Open in IMG/M
3300009101|Ga0105247_10050864Not Available2550Open in IMG/M
3300009545|Ga0105237_10333816Not Available1520Open in IMG/M
3300009545|Ga0105237_11807749Not Available619Open in IMG/M
3300009551|Ga0105238_12052217All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria606Open in IMG/M
3300010048|Ga0126373_12263144Not Available604Open in IMG/M
3300010361|Ga0126378_10284089Not Available1755Open in IMG/M
3300010361|Ga0126378_13142801Not Available525Open in IMG/M
3300010371|Ga0134125_11154652Not Available847Open in IMG/M
3300010379|Ga0136449_100328541All Organisms → cellular organisms → Bacteria2765Open in IMG/M
3300010379|Ga0136449_102586810All Organisms → cellular organisms → Bacteria724Open in IMG/M
3300010379|Ga0136449_103478644All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria600Open in IMG/M
3300011120|Ga0150983_10131742All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria525Open in IMG/M
3300012359|Ga0137385_10443600All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1103Open in IMG/M
3300012927|Ga0137416_10000054All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria40057Open in IMG/M
3300012927|Ga0137416_11324508All Organisms → cellular organisms → Bacteria651Open in IMG/M
3300013296|Ga0157374_11030153Not Available843Open in IMG/M
3300013296|Ga0157374_12722502All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria522Open in IMG/M
3300014325|Ga0163163_10097812All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria2955Open in IMG/M
3300014325|Ga0163163_10734796All Organisms → cellular organisms → Bacteria1050Open in IMG/M
3300014325|Ga0163163_11918697All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium652Open in IMG/M
3300014968|Ga0157379_10057092All Organisms → cellular organisms → Bacteria3489Open in IMG/M
3300014968|Ga0157379_10075269All Organisms → cellular organisms → Bacteria → Proteobacteria3023Open in IMG/M
3300014968|Ga0157379_10075632All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria3015Open in IMG/M
3300014968|Ga0157379_10345855All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales1361Open in IMG/M
3300014968|Ga0157379_10465025All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium1169Open in IMG/M
3300014968|Ga0157379_11157684Not Available742Open in IMG/M
3300015242|Ga0137412_10051797All Organisms → cellular organisms → Bacteria3347Open in IMG/M
3300020580|Ga0210403_10812134All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales743Open in IMG/M
3300020582|Ga0210395_11363399All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium518Open in IMG/M
3300021086|Ga0179596_10602785All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria557Open in IMG/M
3300021170|Ga0210400_10835697Not Available754Open in IMG/M
3300021180|Ga0210396_10497543All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1067Open in IMG/M
3300021402|Ga0210385_10616663All Organisms → cellular organisms → Bacteria → Proteobacteria828Open in IMG/M
3300021402|Ga0210385_10724523All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium762Open in IMG/M
3300021405|Ga0210387_10381059All Organisms → cellular organisms → Bacteria1249Open in IMG/M
3300021405|Ga0210387_10769946All Organisms → cellular organisms → Bacteria851Open in IMG/M
3300021405|Ga0210387_11563856Not Available562Open in IMG/M
3300021406|Ga0210386_11633802Not Available534Open in IMG/M
3300021407|Ga0210383_11453408Not Available569Open in IMG/M
3300021407|Ga0210383_11568710Not Available543Open in IMG/M
3300021433|Ga0210391_10381775All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1106Open in IMG/M
3300021475|Ga0210392_10574494Not Available835Open in IMG/M
3300021477|Ga0210398_10067116All Organisms → cellular organisms → Bacteria → Proteobacteria2922Open in IMG/M
3300021479|Ga0210410_10128666All Organisms → cellular organisms → Bacteria → Proteobacteria2249Open in IMG/M
3300024288|Ga0179589_10030961All Organisms → cellular organisms → Bacteria → Proteobacteria1878Open in IMG/M
3300025914|Ga0207671_10370290All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1137Open in IMG/M
3300025928|Ga0207700_10958567Not Available766Open in IMG/M
3300025929|Ga0207664_11357291All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium631Open in IMG/M
3300025939|Ga0207665_10127773Not Available1801Open in IMG/M
3300025944|Ga0207661_10811882All Organisms → cellular organisms → Bacteria861Open in IMG/M
3300026035|Ga0207703_11171765All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales739Open in IMG/M
3300026035|Ga0207703_11510407All Organisms → cellular organisms → Bacteria → Proteobacteria646Open in IMG/M
3300026035|Ga0207703_11612344Not Available624Open in IMG/M
3300026078|Ga0207702_11403214Not Available692Open in IMG/M
3300026088|Ga0207641_11881188All Organisms → cellular organisms → Bacteria600Open in IMG/M
3300026557|Ga0179587_11128361All Organisms → cellular organisms → Bacteria → Proteobacteria516Open in IMG/M
3300027853|Ga0209274_10482923Not Available641Open in IMG/M
3300027879|Ga0209169_10001829All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria12907Open in IMG/M
3300027879|Ga0209169_10006263All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans6816Open in IMG/M
3300027879|Ga0209169_10037894All Organisms → cellular organisms → Bacteria → Proteobacteria2532Open in IMG/M
3300027879|Ga0209169_10099887All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1502Open in IMG/M
3300027884|Ga0209275_10045383All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria2091Open in IMG/M
3300027908|Ga0209006_10450620All Organisms → cellular organisms → Bacteria1078Open in IMG/M
3300027908|Ga0209006_11467596Not Available518Open in IMG/M
3300028379|Ga0268266_10000228All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria97214Open in IMG/M
3300028379|Ga0268266_10000632All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria47843Open in IMG/M
3300028379|Ga0268266_10025233All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria5059Open in IMG/M
3300028379|Ga0268266_10031789All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales4484Open in IMG/M
3300028536|Ga0137415_10000036All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria102002Open in IMG/M
3300028536|Ga0137415_10575133Not Available937Open in IMG/M
3300028906|Ga0308309_11290779Not Available628Open in IMG/M
3300029999|Ga0311339_10990250All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas789Open in IMG/M
3300030520|Ga0311372_10224619All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria3091Open in IMG/M
3300030520|Ga0311372_10506374All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans1770Open in IMG/M
3300030521|Ga0307511_10445352Not Available514Open in IMG/M
3300030580|Ga0311355_10744992All Organisms → cellular organisms → Bacteria → Proteobacteria906Open in IMG/M
3300030580|Ga0311355_11811127All Organisms → cellular organisms → Bacteria → Proteobacteria518Open in IMG/M
3300030617|Ga0311356_11142746Not Available720Open in IMG/M
3300030618|Ga0311354_10905941All Organisms → cellular organisms → Bacteria → Proteobacteria822Open in IMG/M
3300030693|Ga0302313_10143081All Organisms → cellular organisms → Bacteria978Open in IMG/M
3300030906|Ga0302314_10147897All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria3012Open in IMG/M
3300031231|Ga0170824_112525571All Organisms → cellular organisms → Bacteria → Proteobacteria1027Open in IMG/M
3300031708|Ga0310686_101918592All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria743Open in IMG/M
3300031715|Ga0307476_10824483Not Available686Open in IMG/M
3300031962|Ga0307479_11422882Not Available652Open in IMG/M
3300032160|Ga0311301_10627912Not Available1538Open in IMG/M
3300032515|Ga0348332_13204325Not Available1169Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil15.17%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil11.03%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere9.66%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil7.59%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere6.90%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa6.21%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere5.52%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere4.83%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil4.14%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere4.14%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil2.76%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere2.76%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil2.07%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil2.07%
Switchgrass RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere2.07%
Iron-Sulfur Acid SpringEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring1.38%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil1.38%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere1.38%
Agricultural SoilEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil1.38%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.38%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.69%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.69%
Grass SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil0.69%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil0.69%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil0.69%
Plant LitterEnvironmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter0.69%
EctomycorrhizaHost-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza0.69%
Sugarcane Root And Bulk SoilHost-Associated → Plants → Rhizome → Unclassified → Unclassified → Sugarcane Root And Bulk Soil0.69%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.69%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2162886015Grass soil microbial communities from Rothamsted Park, UK - FO (Mercury 0.02g/kg) assembledEnvironmentalOpen in IMG/M
3300003320Sugarcane root Sample H2Host-AssociatedOpen in IMG/M
3300005260Microbial communities on the surface of kaolinite enhanced biochar from soil with fertiliser in Sydney, AustraliaEnvironmentalOpen in IMG/M
3300005329Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaGEnvironmentalOpen in IMG/M
3300005335Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaGHost-AssociatedOpen in IMG/M
3300005367Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaGHost-AssociatedOpen in IMG/M
3300005435Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaGEnvironmentalOpen in IMG/M
3300005436Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaGEnvironmentalOpen in IMG/M
3300005439Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaGEnvironmentalOpen in IMG/M
3300005529Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1EnvironmentalOpen in IMG/M
3300005548Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaGHost-AssociatedOpen in IMG/M
3300005563Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2Host-AssociatedOpen in IMG/M
3300005591Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1EnvironmentalOpen in IMG/M
3300005602Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2EnvironmentalOpen in IMG/M
3300005610Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3EnvironmentalOpen in IMG/M
3300005614Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2Host-AssociatedOpen in IMG/M
3300005616Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2Host-AssociatedOpen in IMG/M
3300005712Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4EnvironmentalOpen in IMG/M
3300005841Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2Host-AssociatedOpen in IMG/M
3300005842Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2Host-AssociatedOpen in IMG/M
3300005843Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2Host-AssociatedOpen in IMG/M
3300006175Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaGEnvironmentalOpen in IMG/M
3300006176Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5EnvironmentalOpen in IMG/M
3300006893Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaGEnvironmentalOpen in IMG/M
3300009101Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaGHost-AssociatedOpen in IMG/M
3300009545Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaGHost-AssociatedOpen in IMG/M
3300009551Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaGHost-AssociatedOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010371Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1EnvironmentalOpen in IMG/M
3300010379Sb_50d combined assemblyEnvironmentalOpen in IMG/M
3300011120Combined assembly of Microbial Forest Soil metaTEnvironmentalOpen in IMG/M
3300012359Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaGEnvironmentalOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300013296Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaGHost-AssociatedOpen in IMG/M
3300014325Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaGHost-AssociatedOpen in IMG/M
3300014968Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaGHost-AssociatedOpen in IMG/M
3300015242Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300020580Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-MEnvironmentalOpen in IMG/M
3300020582Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-OEnvironmentalOpen in IMG/M
3300021086Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300021170Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-MEnvironmentalOpen in IMG/M
3300021180Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-OEnvironmentalOpen in IMG/M
3300021402Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-OEnvironmentalOpen in IMG/M
3300021405Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-OEnvironmentalOpen in IMG/M
3300021406Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-OEnvironmentalOpen in IMG/M
3300021407Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-OEnvironmentalOpen in IMG/M
3300021433Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-OEnvironmentalOpen in IMG/M
3300021475Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-OEnvironmentalOpen in IMG/M
3300021477Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-OEnvironmentalOpen in IMG/M
3300021479Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-MEnvironmentalOpen in IMG/M
3300024288Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungalEnvironmentalOpen in IMG/M
3300025914Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025928Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025929Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025939Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025944Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026035Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026078Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026088Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026557Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungalEnvironmentalOpen in IMG/M
3300027853Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)EnvironmentalOpen in IMG/M
3300027879Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)EnvironmentalOpen in IMG/M
3300027884Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)EnvironmentalOpen in IMG/M
3300027908Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)EnvironmentalOpen in IMG/M
3300028379Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300028536Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300028906Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)EnvironmentalOpen in IMG/M
3300029999I_Palsa_E3 coassemblyEnvironmentalOpen in IMG/M
3300030520III_Palsa_N2 coassemblyEnvironmentalOpen in IMG/M
3300030521Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EMHost-AssociatedOpen in IMG/M
3300030580II_Palsa_N1 coassemblyEnvironmentalOpen in IMG/M
3300030617II_Palsa_N2 coassemblyEnvironmentalOpen in IMG/M
3300030618II_Palsa_E3 coassemblyEnvironmentalOpen in IMG/M
3300030693Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N2_2EnvironmentalOpen in IMG/M
3300030906Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N2_3EnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031715Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05EnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300032160Sb_50d combined assembly (MetaSPAdes)EnvironmentalOpen in IMG/M
3300032515FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
FOassembled-_0870.000019002162886015Grass SoilMLAYCGRPPSASFCDRFPYIGPRYARETIAEICSMGVALATAIISQTGS
rootH2_1000979433300003320Sugarcane Root And Bulk SoilMIAYCGRPAAASFCDQLTHSDDYARELIAKICSLWVALVTAIIRQTGSSP*
Ga0074072_1000550163300005260SoilMIAYCGRPPTASFGDRLPYIEPRYARETIAETCSLGVALATAIITQTGS*
Ga0070683_10083815123300005329Corn RhizosphereMIAYCGRPPAASSGDRFPYIEPRYARETIAGICSLGVALATAIITQAGS*
Ga0070666_1041692713300005335Switchgrass RhizosphereMLAYCGRPSTASSGDPSSYIVPRYARVTIAGSCSLRVALATAIISQTGS
Ga0070667_10072780823300005367Switchgrass RhizosphereMLAYCGRPAAAPFGDRSSYIVPRYARVTIAEMYSLQVALATAIISQTGSWAAGAF*
Ga0070667_10138519813300005367Switchgrass RhizosphereMLAYCGRPPAASFGDRSSYIVPRYARVTIAETCSLGVALATAII
Ga0070714_10053639523300005435Agricultural SoilMIAYCGRPPAASSGDRFPYIEPRYARETIAGICSLGVALATAIITQTGS*
Ga0070713_10018126923300005436Corn, Switchgrass And Miscanthus RhizosphereMIAYCGRPPAASSGDRFPYIEPRYAREAIAEICSLGVALATAIITQAGS*
Ga0070713_10026092223300005436Corn, Switchgrass And Miscanthus RhizosphereMLAYCGRPPAASSGDRFPYIEPRYARETIAGICSLGVALATAIITQTGS*
Ga0070713_10165778813300005436Corn, Switchgrass And Miscanthus RhizosphereMIAYCGRPPAASSGDPFAYIVPCYARETIAEICSLGVALATAII
Ga0070711_10080381913300005439Corn, Switchgrass And Miscanthus RhizosphereMIAYCGRPSAAYFCDRFPYIEPSYARETIAEICSLRVALATAIISQTGS*
Ga0070711_10191655623300005439Corn, Switchgrass And Miscanthus RhizospherePMLAYCGRPSAASFGDRSSYIVPRYARVTIAEMYSLQVALATAIISQTGSWAAGAF*
Ga0070741_10011993113300005529Surface SoilMLAYCGRPAAASFCDPFPYIEPRYARETIAESCSLPVVLATAIISQTGS*
Ga0070741_1001824773300005529Surface SoilMLAYCGRPAVASCCDPFPYIEHRYARETIAAICSLPGALATAIIRQTGSYPT*
Ga0070741_1002174743300005529Surface SoilMLAYCGRPAAASSCDPFPYIEHSYARETIAGICSLTVALATAIIGQTGS*
Ga0070741_1005993223300005529Surface SoilMLAYCGRPAAASFCDPFPYIEPRYARETITEICSLPVVLATAIMGQTGSFT*
Ga0070741_1006019023300005529Surface SoilMIAYCGRPSAASCRDHFPYIDPRYARETIAAICSLAVVLATAIISQTGS*
Ga0070741_1012853133300005529Surface SoilMLAYCGRPAAAAFCDPFPYIEPRYARETIAEIRSLGVALATAIITQTGS*
Ga0070665_100002654173300005548Switchgrass RhizosphereMIAYCGRPPAASFGDRYSYIVPRYARVTIAETCSLGVALAT
Ga0070665_10001268233300005548Switchgrass RhizosphereMLAYCGRPPAASFGDRYPYIEPRYARVTITETCSLGVALATAIITHTGS*
Ga0070665_10002279463300005548Switchgrass RhizosphereMLAYCGRPPAASFGDRSSYIVPRYARVTIAETCSLGVALA
Ga0070665_10003169013300005548Switchgrass RhizosphereMLAYCGRPPAASFGDRSSYIVPRYARVTIAETCSLGVAL
Ga0070665_10003644713300005548Switchgrass RhizosphereMLAYCGRPPAAYSGDPSSYIVPRYARVTIAGICSLGVALATAI
Ga0070665_10005303423300005548Switchgrass RhizosphereMLAYCGRPPAASFGDRFPYIVPAMPRETIAEICSLGVALATAIISQTGSREKYQ*
Ga0070665_10222792723300005548Switchgrass RhizosphereMLAYCGRPPAASFGDRFPHSTRYARVTIAESCSLAVALATAIITQPGS*
Ga0068855_10078730913300005563Corn RhizosphereMLAYCGRPPAASSGDRFPYIEPRYARETIAAICSLGVALATAIITQTGS*
Ga0068855_10203969213300005563Corn RhizosphereMLAYCGRPSAASFGDRSSYIVPRYARVTIAETCSLRVAL
Ga0070761_1059832023300005591SoilMITYCGRPSSASFCDRFPYICVGYARETIAETCSIWVALATAIMSQPGS*
Ga0070761_1065089423300005591SoilMLAYCGRPRSASFCDPFPYIGPRYARETLAESCSTGAALATAIMSQAGS*
Ga0070761_1070604113300005591SoilMLAYCGRPSSAAFCDPFPYIVPRYARETIAETCSIWVALATAIMSQPGS
Ga0070761_1079060223300005591SoilMLAYCGRPPSASFCDPFPYIDPRYARKTIAESCSIWVALATAITGQTGPCASYNS*
Ga0070762_1003643133300005602SoilMLAYCGRPGSASFCDRFPYICVGYARETIAESCSIRVALATAIISQTGSESAPP*
Ga0070762_1004331813300005602SoilMLAYCGRPRSASFCDRFPYICVGYAREAIAESCSIWVALATAIISQTGSWR*
Ga0070762_1015402523300005602SoilMLAYCGRPSSASFCDRFPYIDPRYAREAIAEICSSGVALATAIIGQSGS*
Ga0070762_1019509623300005602SoilMLAYCGRPSSASFCDPFPYIDPRYARETITESCSIWVALATAIISQA
Ga0070762_1117751423300005602SoilMLAYCGRPRSAVFCDPFPYICVGYARETIAETCSTWVALATAIINQTGSYL*
Ga0070763_1016833533300005610SoilMLTYCGRPISAAFCDPFPYIGPRYAREAIAESCSSWVALATAIIDQSGS*
Ga0068856_10089506423300005614Corn RhizosphereMLAYCGRPSAASSGDPSSYIVPRYARVTIAGSCSLRVA
Ga0068856_10243290413300005614Corn RhizosphereMLAYCGRLPASSFGDRFPYIVRASRETIAPFSIRLGSSIWVALDTAIISQLG
Ga0068852_10128108713300005616Corn RhizosphereMIAYCGRPTAASFGDRFPHSPRYARETIAEICSLGVAL
Ga0070764_1000061623300005712SoilMLAYCGRPGSASFRDRFPYICVGYAREAIAESCSIWVALATAIISQTGSWR*
Ga0070764_1022796213300005712SoilMLAYCGRPRSASFCDPFPYIGPRYARETIAESCSI
Ga0068863_10171935113300005841Switchgrass RhizosphereMIAYCGRPTAASFCDRFPYIEPSYARETIAEICSLRVALATAII
Ga0068863_10203599013300005841Switchgrass RhizosphereMITYCGRLPAASSGDRFPYIDPRYARETIAAICSLGGALATAIIRQTGSQQEYR
Ga0068858_10073405513300005842Switchgrass RhizosphereMIAYCGRPTAASFCDRFPYIRPSYARETIAEICSLRVAL
Ga0068858_10098948123300005842Switchgrass RhizosphereMLAYCGRPPAASFVDRFSYIEPRYARATIDETCSLGVALATAI
Ga0068858_10129043413300005842Switchgrass RhizosphereMIAYCGRPPAASFGDRYSYIVPRYARVTIAETCSLGVALATAII
Ga0068860_10066627633300005843Switchgrass RhizosphereMLAYCGRPSAASSGDPSSYIVPRYARVTIAGSCSLRVALATAIISQAGS*
Ga0070712_10134968423300006175Corn, Switchgrass And Miscanthus RhizosphereMLACCGRPPAASFGDRFPYIVPRYARETIAEICSLGVALATAIISQTGSQGWTKAGRHL*
Ga0070765_10065677113300006176SoilMLAYCGRLPSADFCNPSPYKSHYARETIAELGSMGVALATAIISQTG
Ga0070765_10097393613300006176SoilMLAYCGRPRSVGFCDPFPYIVPRYARETIAETYSIWVALATAIIGQTGS
Ga0070765_10171581813300006176SoilMLAYCGRPSAASFCDPFPYRCIGYARETIAESCSTRVALATAI
Ga0073928_1028371223300006893Iron-Sulfur Acid SpringMLAYCGRPRSAAFCDRFPYICVGYARETIAESCSIW
Ga0073928_1061226623300006893Iron-Sulfur Acid SpringMLAYCGRPISSIFCDRFPYIEPRYARETIAETCSIWVALATAIIS
Ga0105247_1005086443300009101Switchgrass RhizosphereMIAYCGRPTAASFCDRFPYIEPSYARETIAEICSLRVALATAI
Ga0105237_1033381613300009545Corn RhizosphereMIAYCGRPPAASFGDRFPYIVPAMPRETIAESCSL
Ga0105237_1180774913300009545Corn RhizosphereMIAYCGRPLAAYSGDPSSYIVTRYARVTIAGICSLGVALATALIGHPGSR
Ga0105238_1205221713300009551Corn RhizosphereAASFRDPFAYIAGSMRRETIAEICSLRAVLVTALINQTGS*
Ga0126373_1226314423300010048Tropical Forest SoilMLAYCGRPAAAAFCDPFPYIVPRYARETIAEIRSLGVALA
Ga0126378_1028408933300010361Tropical Forest SoilCGRPAAAAFCDRFPYIVPRYARETIAETRSLGVALATAIINQTGS*
Ga0126378_1314280113300010361Tropical Forest SoilMLAYCGRPAAPASCDRFPYIVPRYARETIAGICSLGVALATAIMSQT
Ga0134125_1115465223300010371Terrestrial SoilMNAYCGRPPAASFGDRFPSIVPAMPRETIAEICSLGVALATA
Ga0136449_10032854123300010379Peatlands SoilMLAYCGRPRSASFCDRFPNIDPRYARETIAESCSIWVALATAIMGQAGS*
Ga0136449_10258681023300010379Peatlands SoilMLAYCGRPRSASFCDRFPYICVGYARETIAESCSIWVALA
Ga0136449_10347864413300010379Peatlands SoilMLAYCGRPRSASFCDRFPYICVGYARETIAESCSIWVALAT
Ga0150983_1013174213300011120Forest SoilMLAYCGRPAAAAFCDPFPYIVPRYARETIAGIRSLGVALATAIMSQTGSTAK
Ga0137385_1044360033300012359Vadose Zone SoilMLAYCGRPSSASFCDRFPYIVLSYARETIAETCSSWVALATAII
Ga0137416_10000054333300012927Vadose Zone SoilMIAYCGRPTAASFRDRCAYIVGAMPRGTIAEICSPRVGLVTALIGQTGS*
Ga0137416_1001025553300012927Vadose Zone SoilMIAYCGRPTAASFCDPFAYIVVTMRAKPIAKICSLWVALATALLGQTGS*
Ga0137416_1017660353300012927Vadose Zone SoilMFACCGRPAAASFCDPFAYIVFNYARETIAKICSLGAALAT
Ga0137416_1132450813300012927Vadose Zone SoilMLAYCGRPRSASFCDRFPYICVGYARETIAESCSIWVALATAII
Ga0157374_1103015323300013296Miscanthus RhizosphereMLAYCGRPAAAPFGDRSSYIVPRYARVTISEICSLQGALATAIIS
Ga0157374_1272250233300013296Miscanthus RhizosphereMIAYCGRPPAASFGYRFPYIEPRYARETIAEICSLGGRPRDGDHY
Ga0163163_1009781223300014325Switchgrass RhizosphereMIAYCGRPSAAYFCDRFPYIEPSYARETIAESCSLRVALATAIMSQTGS*
Ga0163163_1073479623300014325Switchgrass RhizosphereMIAYCGRPTAAYFCDRFPYIEPSYARETIAEICSLRVALATAIMSQSGSYGIPPTGE*
Ga0163163_1191869723300014325Switchgrass RhizosphereMIAYCGRPSAASFCDRFPYIEPSYARETIAESCSLRVALAT
Ga0157379_1005709223300014968Switchgrass RhizosphereMLAYCGRPPAASFVDRFSYIEPRYARATIDETCSLGVALATAIMAHTGS*
Ga0157379_1007526913300014968Switchgrass RhizosphereMIAYCGRPAAASFCDRFPYIGPSYARETIAEICSL
Ga0157379_1007563223300014968Switchgrass RhizosphereMIAYCGRPSTASFCDRFPYIEPSYARETIAEICSLRVALATAIMSQTGS*
Ga0157379_1022137433300014968Switchgrass RhizosphereAASFGDRYSYIVPRYARVTIAETCSLGVALATAIISQAGS*
Ga0157379_1034585513300014968Switchgrass RhizosphereMLAYCGRPSAAASGDPSSYIVPRYARVTIAGICSLRVALATAIISQTGS
Ga0157379_1046502513300014968Switchgrass RhizosphereMITYCGRPTAASFCDRFPYIEPSYARETIAEICSLRVGLATAIMAQTGSR
Ga0157379_1115768423300014968Switchgrass RhizosphereMLAYCGRPPAASFGDRYSYIVPRYARVTIAETCSLGVALAT
Ga0137412_1005179743300015242Vadose Zone SoilMIAYCGRPAAASFCDPFAYICAHYARETIAKICSLRVALVTAIISHPGSSR*
Ga0210403_1081213413300020580SoilMIACCGRPAAAAFGDRFPYIVPRYARETIAEIRSLGVALATALMSQ
Ga0210395_1136339923300020582SoilMLAYCGRPGSAGFCDPFPYICIGYARETIAETGSTRVALATTIISQTGSRSRHAAVVSVILSPC
Ga0179596_1060278513300021086Vadose Zone SoilMLAYCGRPRSASFCDRFPYICVGYAREPIAESCSIWVALATAIISQTGSYV
Ga0210400_1083569713300021170SoilMLAYCGRPSSASFCDRFPYICVGYARETIAESCSIWVALAPAIITHTG
Ga0210396_1049754323300021180SoilMLAYCGRPSSASFCDRFPYICVRYARETIAESCSMR
Ga0210385_1061666323300021402SoilMLAYCGRPSSASFCDRCPYICIGYARETIAETCSMRVALGTAIISQTG
Ga0210385_1072452313300021402SoilMITYCGRPSSASFCDRFPYICVGYARETIAETCSIWVALATAIMSQ
Ga0210387_1038105933300021405SoilMLAYCGRPRSASFCDRFPYIDPRYARETIAETCSIWVALATAIIS
Ga0210387_1076994613300021405SoilMLAYCGRPSSASFCDRFPYIDPRYAREAIAEICSSGVALATAI
Ga0210387_1156385623300021405SoilMITYCGRPSSASFCDRFPYIGLGYARETIAESCSIWVALATVIIDQPGSTAAAGTGDAN
Ga0210386_1163380213300021406SoilMLAYCGRLSSASFCDRFPYIGPRYARVTIAESCSMR
Ga0210383_1145340823300021407SoilMLAYCGRPSSASFCDRFPYICVGYARETIAESCSMR
Ga0210383_1156871023300021407SoilMLAYYGRPAAAASCDPFPYIVPRYARETIAGICSLGVALATAIMSQTGPLG
Ga0210391_1038177533300021433SoilMLAYCGRPPSAAFRDPFPYIVHAMRGETIAKIGSMRDALATAIIRQTDSKAAAF
Ga0210392_1057449423300021475SoilPVWLMLAYCGRPGSASFCDRFPYICIGYARKTIAETCSIRVVLATAIISQTGS
Ga0210398_1006711633300021477SoilMLAYCGRPRSAVFCDPFPYICVGYARETIAETCSTWVALATAIINQTGSYL
Ga0210410_1012866613300021479SoilMLAYCGRPSSASFCDRFPYICVGYARETIAESCSMRGGLATAIIGQTGYEVSSVATARAA
Ga0179589_1003096133300024288Vadose Zone SoilMLAYCGRPRSSSFCDRLPYIEPRYARQTIAESCSIWVALATAIISQTGSLASYPGDF
Ga0207671_1037029023300025914Corn RhizosphereSMIAYCGRLSAASFRDPFAYIAGSMRRETIAEICSLRAVLVTALINQTGS
Ga0207700_1095856723300025928Corn, Switchgrass And Miscanthus RhizospherePPAASSGDRFPYIEPRYARETIAGICSLGVALATAIITQTGS
Ga0207664_1135729113300025929Agricultural SoilMIAYCGRLPAAAFDDPFPYIVPRYARETIVEICSLGVALATALIGQTC
Ga0207665_1012777313300025939Corn, Switchgrass And Miscanthus RhizosphereMIAYCGRPSAASFGDRFPYIVPAMPRETIAEICSLRVALATAIISQAGSSDI
Ga0207661_1081188223300025944Corn RhizosphereMITCCGRPPAASSGDRFPYIEPRYARETIAAICSLRVALATVIIRQAGS
Ga0207703_1117176513300026035Switchgrass RhizosphereMLAYCGRPPAASFGDRYSYIVPCYARVTIAETCSLGVALATAIISQTGSWPPVEVLSDSAGIS
Ga0207703_1151040723300026035Switchgrass RhizosphereMIAYCGRPAAASFCDRFPYIGPSYARETIAEICSLGDG
Ga0207703_1161234423300026035Switchgrass RhizosphereMIAYCGRPTAASFCDRFPYIGPSYARETIAEICSLRVALATAIM
Ga0207702_1140321433300026078Corn RhizosphereMLAYCGRPSAASSGDPSSYIVPRYARVTIAGSCSLRVALAT
Ga0207641_1188118823300026088Switchgrass RhizosphereMITYCGRLPAASSGDRFPYIDPRYARETIAAICSLGGALATAIIRQTGSQQEYRPAS
Ga0179587_1112836113300026557Vadose Zone SoilMLAYCGRPSSASFCDRFPYICVGYARETIAESWRPARPR
Ga0209274_1048292323300027853SoilMLAYCGRPSSAAFCDPFPYIVPRYARETIAETCSIWVALATAIMSQPGSSGR
Ga0209169_10001829103300027879SoilMLAYCGRPSSASFCDRFPYIDPRYAREAIAEICSSGVALATAIIGQSGS
Ga0209169_1000626333300027879SoilMITYCGRPSSASFCDRFPYICVGYARETIAETCSIWVALATAIMSQPGS
Ga0209169_1003789413300027879SoilMLAYCGRPRSVGFCDPFPYIVPCYARETIAETYSIWVALATAIIGQTGSRPHRPLEL
Ga0209169_1009988723300027879SoilMLAYCGRPASASFCDRFPYIGPRYARETIAETCSMRVALATAIISQTGSWLSTLGYSVL
Ga0209275_1004538333300027884SoilMLAYCGRPGSASFRDRFPYICVGYAREAIAESCSIWVALATAIISQTGSWR
Ga0209006_1045062023300027908Forest SoilMLAYCGRPSSASFCDRFPYIDPRYAREAIAEICSSGV
Ga0209006_1146759613300027908Forest SoilMLAYCGRPSSAAFCDPFPYIDPRYARETIAETCSIWVALATAI
Ga0268266_10000228443300028379Switchgrass RhizosphereMLAYCGRPPAASFGDRYPYIEPRYARVTIAETCSLGVALATAIITHTGS
Ga0268266_1000063283300028379Switchgrass RhizosphereMLAYCGRPPAASFGDRSSYIVPRYARVTIAETCSLGVALATAIINQTGS
Ga0268266_1002523313300028379Switchgrass RhizosphereMLAYCGRPPAASFGDRSSYIVPRYARVTIAETCSLEVALATAI
Ga0268266_1003178913300028379Switchgrass RhizosphereMLAYCGRPPAASFGDRSSYIVPRYARVTIAETCSLGVALATA
Ga0137415_10000036593300028536Vadose Zone SoilMIAYCGRPTAASFRDRSAYIVGAMPRGTIAEICSPRVGLVTALIGQTGS
Ga0137415_1057513313300028536Vadose Zone SoilWLMLAYCGRPSSASFCDRFPYICVGYAREPIAESCSIWVALATAIITHTGS
Ga0308309_1129077923300028906SoilMLAYCGRPGSAGFCDPFPYICIGYARETIAETCSTRVA
Ga0311339_1099025023300029999PalsaMIAYCGRPRSAAFCDPFPYIDPRYARETIAEICSIWVALATAIINHTGS
Ga0311372_1022461933300030520PalsaMLAYCGRPSSANFCDRFSYIGPRYAREAITEICSMSAALATAIIGHTGSAIHHAR
Ga0311372_1050637413300030520PalsaMLAYCGRPRSASFCDRFPYICVGYARETIAETCSIWVALATAIISHT
Ga0307511_1044535213300030521EctomycorrhizaMLAYCGRPSSASFCDRFPYICVGYARETIAESCSIWVALA
Ga0311355_1074499223300030580PalsaMLAYCGRPPSAAFRDPFPYIVHAMRGETIAKIGSMGDALATAIIGQTGSSA
Ga0311355_1181112713300030580PalsaMLAYCGRPSSASFCDRFPYICVGYARETIAETCSIWVALVT
Ga0311356_1114274623300030617PalsaMLAYCGRPRSASFCDRFPSIEPSYARETIAETCSTWVALAT
Ga0311354_1090594123300030618PalsaMLAYCGRPSSAAFCDPFPYIDPRYARETIAETRSTWVALATAIISQTGSLPPCAPPPTCA
Ga0302313_1014308113300030693PalsaMLAYCGRPSSAAFCDPFPYIDPRYARETIAETRSTWVALATAI
Ga0302314_1014789743300030906PalsaMLAYCGRPRSASFCDRFPYICVGYARETIAETCSIWVALATAIISHTGSRS
Ga0170824_11252557123300031231Forest SoilMLAYCGRPAAAAFCDPFPYIEPRYARETIAEICSLA
Ga0310686_10191859223300031708SoilMLAYCGRPRSAFFCDRFPSIEPSYARETIAETCSTWVALATAIIS
Ga0307476_1082448313300031715Hardwood Forest SoilMLAYCGRPAAAAQVFEDMGDPFPYIVPRRRRETIAEIRSLGVALVTAIMSQTSSY
Ga0307479_1142288223300031962Hardwood Forest SoilVMIAYCGRPPAASFRDPLTYISIDYARSTIAEICSLAVALAT
Ga0311301_1062791243300032160Peatlands SoilMLAYCGRPRSASFCDRFPYICVGYARETIAESCSIWGALAT
Ga0348332_1320432523300032515Plant LitterMLTYCGRPAAASCGDPFPYIEPRYARETIAASCSLPGGLATAIISQ


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