2077657009: Bovine rumen viral communities from University of Illinois Dairy Farm in Urbana, IL, Cow rumen 6993

Overview

Basic Information

• IMG/M Taxon OID: 2077657009
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046183 | Gp0051757 | Ga0026432
• Sample Name: Bovine rumen viral communities from University of Illinois Dairy Farm in Urbana, IL, Cow rumen 6993
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 100678798
• Sequencing Scaffolds: 40
• Novel Protein Genes: 42
• Associated Families: 22

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	37
All Organisms → Viruses → Predicted Viral	1
All Organisms → Viruses	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Bovine Rumen Viral Communities From University Of Illinois Dairy Farm In Urbana, Il
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Bovine Rumen → Bovine Rumen Viral Communities From University Of Illinois Dairy Farm In Urbana, Il

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal proximal gut

Location Information

• Location: University of Illinois Dairy Farm in Urbana, IL
• Coordinates
  • Lat. (^o): 40.0886
  • Long. (^o): -88.2202
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023997	Metagenome / Metatranscriptome	208	Y
F039427	Metagenome / Metatranscriptome	163	Y
F042680	Metagenome / Metatranscriptome	157	Y
F046753	Metagenome	150	Y
F046769	Metagenome / Metatranscriptome	150	Y
F051619	Metagenome / Metatranscriptome	143	Y
F053097	Metagenome / Metatranscriptome	141	Y
F056169	Metagenome / Metatranscriptome	138	Y
F057037	Metagenome / Metatranscriptome	136	Y
F057815	Metagenome / Metatranscriptome	135	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
BRPC3_contig01109	Not Available	957
BRPC3_contig01113	All Organisms → Viruses → Predicted Viral	1742
BRPC3_contig02008	Not Available	886
BRPC3_contig02345	Not Available	572
BRPC3_contig03583	Not Available	594
BRPC3_contig03589	Not Available	902
BRPC3_contig03594	Not Available	933
BRPC3_contig03595	Not Available	610
BRPC3_contig04596	Not Available	715
BRPC3_contig04657	Not Available	906

Sequences

Scaffold ID	Protein ID	Family	Sequence
BRPC3_contig01109	BRPC3_00808410	F039427	MSKKVFNLVTGIVGALQTVGVAIVTYTEPAYATAINSAIVIAGTAIIEICNLFTKEDK
BRPC3_contig01113	BRPC3_00607820	F082887	MKKVKKIAKYTTNILGMVSMLIVGINAIDGIDIPNAMVLVQIIAVIQGVIGTYLIQGKLWGGK
BRPC3_contig02008	BRPC3_02329120	F062320	MKKFFEIMGKDILSENFTCRDYVVYGIVAPLVLVLVCVLADSLG
BRPC3_contig02345	BRPC3_00340260	F100165	MKVAIYSIHSDYKKLSTDFEKLKNIVTECLQNDTFDGHGTEIFDLVMDIDYHLDRIYVPLNDTYNDVFIRSKK
BRPC3_contig03583	BRPC3_01434300	F023997	MITLKNWYQQQPEVVYFIQTDFQGDEFMKKLVRSKMSKQQWDKTVDRYSDREIYKVITENHSGELHSWVYFREGE
BRPC3_contig03589	BRPC3_01915460	F023997	MITLKNWYQQQPEVVYFVQTDYQGDEFMKKLVRSEMSKQQWDKTVDRYSDCEIYKVITENVDGKLHSWVYFREGE
BRPC3_contig03594	BRPC3_01275960	F023997	MLNDNLKNWYQQQPEVVYFIQTNFQGDEFMKKLVRSEMSKQQWDKTVDRYSDREIYKVITENIDGELHSWVYFKEGE
BRPC3_contig03595	BRPC3_02897640	F023997	VVYFIQTDYQGDEFMKKLVRSEMPKEQWDKTVDRYSDREIYKVITENHSGELHSWVYFKEGE
BRPC3_contig04596	BRPC3_00966700	F039427	MSKKVFALVSGIVGALQTAGVAIVTYTSPENATLINSAIVAAGAAIIEICNMFVKD
BRPC3_contig04657	BRPC3_01836510	F023997	MITLKNWYQQQPEVVYFIQTDYQGDEFMKKLVRSEMSKQQWDKTVDRYSDREIYKVITENIDGKLHSWVYFKEGE
BRPC3_contig07425	BRPC3_01604270	F023997	MITLKNWNEQQPEVVYFVQTNFQGDEFMKKLVRSKMSKQQWDKTVDRYSDREIYKVITENHSGELHSWVYFKEGE
BRPC3_contig07681	BRPC3_00012350	F023997	VITLKNWYKQQPEVVYFIQTDYQGDEFMKKLVRSEMSKEAWDKTVDRYSDCEIYKVITENIDGELHSWVYFKEGE
BRPC3_contig07762	BRPC3_02854410	F023997	MITLKNWYKQQPEVVYFVQTNFQGDEFMKKLVRSEMSKEQWDKTVDRYSDCEIYKVITENIDGELHSWVYFKEGE
BRPC3_contig07813	BRPC3_02176850	F023997	MITLKNWYQQQPEVVYFIQTNFQGDEFMKKLVRSEMSKERWDKTVDRYSDCEIYKVITENIGGELHSWVYFKEGE
BRPC3_contig07845	BRPC3_00711310	F100165	MEKLTEKKIEKMKVAIYSIHSDYKKLSSDFEKLKNIVTECLQHDTFDSHGTEIFDTVMDIDYHLDRIYVPLNDAYNDIFVRS
BRPC3_contig07866	BRPC3_02940560	F023997	MITLKNWYQQQPEVVYFVQTDYQGDEFMKKLVRSEMSKQQWDKTVDRYSDCEIYKVITENIDGELHSWVYFKEGE
BRPC3_GDEZLPW01A3NV5	BRPC3_02207740	F102225	MNRPHEEEFQKYLWNMHCNGDIFAEYWRPFTYDEWLRNGKPIEDGGVKLSDGTEHLTTFR
BRPC3_GDEZLPW01A4EYD	BRPC3_00797420	F062320	EFLEIMGKDIMSENFTKKEYVVYGIIAPLVLVLVCGLVGSLA
BRPC3_GDEZLPW01A4RQJ	BRPC3_01800380	F023997	MITLKNWYQQQPEVVYFVQTNFQGDEFMKKLVRSEMSKEQWDKTVDRYSDCEIYKVITENIGGELHSWVYFKEGK
BRPC3_GDEZLPW01AE0GP	BRPC3_00110520	F023997	VITLKNWYKQQPKVVYFIQTNFQGDESMKKLVRSEMSKEQWDKTVDRYSDREIYKVITENIDGELHS
BRPC3_GDEZLPW01AIB9K	BRPC3_01507870	F102225	MDIDYKEYLWHMHCNGDIFAECWRPFTYEEWVRNDKPLYDGGVKLDDG
BRPC3_GDEZLPW01AUDTL	BRPC3_02659610	F082004	MAILHLNLTEDHLKLVRFLNIEDKDDDVLTINKKVMLTMQTHILDDVAMVLGLRDKAIKGTEEDADGAAYPDDVEKYMLDTYHYVSDNMYLIETLVHQFVFEGVKPGKYRCKDSEMVWTREE
BRPC3_GDEZLPW01B1IDS	BRPC3_01033750	F102209	MKIPKIKDDESLAMWRERLAREFNLDYKMQELIREVSITSYIHGTNTTLEILKKEGRL
BRPC3_GDEZLPW01B1YI4	BRPC3_00244560	F057815	MAKKIKDSDILKAMAMHLDEESVVFGANGHYANGAYYDITKVSSVFGDKDYNSQDAIDGADSTEAAKKYRTDNDKMDENLQKAIWLKNF
BRPC3_GDEZLPW01BAES1	BRPC3_00511150	F061341	MAKKKNIKVGTINGLDVLKQTRPPQDIPFRTGSYTDKRKKREKVNKNRLDKWL
BRPC3_GDEZLPW01BOTF6	BRPC3_01580880	F079361	MIYFTIAKNECGYLIDSISEDYATLRLKFPDEKIYKSDEPIVSIYILKDQLNEVS
BRPC3_GDEZLPW01CADJE	BRPC3_00378050	F051619	MNNNVNDINWNQVRIDASINIMNAILSSSIMVFIFQFIFKKQIADIAVEYADKLIEELKK*NLSDI
BRPC3_GDEZLPW01CRWU1	BRPC3_01910560	F062320	MKEFLEIMGKDIMTENFTRKEYVVYGIVAPLVLVLVCGLVGSLA
BRPC3_GDEZLPW01CSREA	BRPC3_02861020	F046769	MLTNTSLTIYHKGYDDFERIETWQRFNYENVWMFGGKGASLNKGFTDSNDVQVRIPYDKNENLNIDNFAIGDIIVEGNLSEDIETQQDLEDYLVYNITSITNNTYGINKHIHLGGK
BRPC3_GDEZLPW01CT6V7	BRPC3_02855500	F053097	MFDIKGDKISLNTEDLAIPPFREHFNNAKDKSFALKEIEYVIWLHKWNTPYEAYPLETRASTVAKDIFGDEKYIPTDEVKTLEKRFLEFQETPGTRLLSASQTAAEGLIAALNDYS
BRPC3_GDEZLPW01CTGC3	BRPC3_00614920	F071811	MVTISNSQRDEAVRYLQALADTLAGDDRTQVMNLCRLARRLAKQLEKREKK
BRPC3_GDEZLPW01CYE49	BRPC3_00967520	F061418	MRNETLQALCRDYLGRLRYMGKKHGIDVDSIIRANRKGECSGTEREVQMLSRMVDDERISRTDIPKILGKSYRQSNDDGDFEKVKKLRHVGMYSKVSALLFSS
BRPC3_GDEZLPW01DA3GS	BRPC3_01082310	F023997	MITLKNWYKQQPEVVYFIQTNFQGDEFMKKLARSEMSKERWDKTVDRYSDCEIYKVITENIGGELHSWVYFKEGE
BRPC3_GDEZLPW01DBSBS	BRPC3_01417010	F089629	APKATATEWLNEFGETMPNIVKVTKVTNARAYDYAKAINRQLAKQGDAADFKSDRMSGYEWVVPNIIKRAEKDGSLQMCVTFKENDRTKFETFYIVEDHFATADELNFITEHLYKAPNKSVKQTESGIADEDVVMVRNYKFSNIIAVGQTPQIEEIWSNIE
BRPC3_GDEZLPW01DMUTQ	BRPC3_00462880	F039427	MSKKVFNLVTGIVGALQTIGVAFVTYYEPAYATAINSAIVIAGTAIVEICNLFTTESK
BRPC3_GDEZLPW01DVVHH	BRPC3_02007530	F046753	VLYVITESEVGKMTDNVIMVILGFIGALLVALKPILDLNTNITELKVSIDAFKSSVDKLDSRITEHGKEIDKIKEQVVDHEARLKNLER
BRPC3_GDEZLPW01DYGX2	BRPC3_02689530	F056169	MTSKEAIQIARKYNLEAEVRQELASGLTPEEALSEWDIC
BRPC3_GDEZLPW01E6BSJ	BRPC3_02966530	F093002	EQEFDSQVWRRFDLVTTDTGIETTVMNVCFTTRSVRIFVKNAPPEWMPCKRIEKHTTRKGDTADEGTIIEELHNRILKQNEQIERLKNEKTALAEKISKSYHSEILKAVNAIKEGLTEKKHKIEKN
BRPC3_GDEZLPW01EAWLB	BRPC3_02714960	F023997	MITLKNWYQQQPEVVYFIQTDYQGDEFMKKLVRSEMPKEQWDKTVGRYSDCEIYKVITENIDGELHSWVYFKEGE
BRPC3_GDEZLPW01EIM2N	BRPC3_01891270	F057037	MIVLEFTDDKFGKAMKAISEIGKHSECLAAIFEDLASDSEYGERGHKYYDDDDDMYGSRYGMRRGR
BRPC3_GDEZLPW01EPIGJ	BRPC3_02898000	F039427	MSKKVFNLVTAIVGALQAVGVAVVTYTSPEYATAINSAVVIAGTAIIEICNLFTKESE
BRPC3_GDEZLPW01EZFEL	BRPC3_01197410	F042680	MIVQDIKPLVKGIAQLQYIMAGGIAVYHITSVDGNKYQLEIDLSDKKDVGETAAFKPTEKGLLLMRWIRRANDNDTLIKIV