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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 2044078003 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0045634 | Gp0051657 | Ga0011095 |
| Sample Name | Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL |
| Sequencing Status | Permanent Draft |
| Sequencing Center | University of Illinois, Urbana-Champaign |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 58125848 |
| Sequencing Scaffolds | 30 |
| Novel Protein Genes | 30 |
| Associated Families | 30 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 1 |
| Not Available | 16 |
| All Organisms → cellular organisms → Bacteria | 1 |
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 3 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | 2 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 2 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes | 1 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Switchgrass, Maize And Miscanthus Rhizosphere Microbial Communities From University Of Illinois Energy Farm, Urbana, Il |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Switchgrass, Maize And Miscanthus Rhizosphere → Switchgrass, Maize And Miscanthus Rhizosphere Microbial Communities From University Of Illinois Energy Farm, Urbana, Il |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → rhizosphere → bulk soil |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | UIUC Energy Farm, Urbana, Illinois 61801 | |||||||
| Coordinates | Lat. (o) | 40.109 | Long. (o) | -88.204 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000442 | Metagenome / Metatranscriptome | 1132 | Y |
| F000487 | Metagenome / Metatranscriptome | 1086 | Y |
| F000801 | Metagenome / Metatranscriptome | 886 | Y |
| F001704 | Metagenome / Metatranscriptome | 649 | Y |
| F002473 | Metagenome / Metatranscriptome | 556 | Y |
| F007592 | Metagenome / Metatranscriptome | 348 | Y |
| F007813 | Metagenome / Metatranscriptome | 344 | Y |
| F008140 | Metagenome / Metatranscriptome | 338 | Y |
| F011015 | Metagenome | 296 | Y |
| F014456 | Metagenome / Metatranscriptome | 263 | Y |
| F020264 | Metagenome / Metatranscriptome | 225 | Y |
| F020916 | Metagenome / Metatranscriptome | 221 | Y |
| F021195 | Metagenome | 220 | Y |
| F024166 | Metagenome / Metatranscriptome | 207 | Y |
| F027008 | Metagenome | 196 | Y |
| F027952 | Metagenome / Metatranscriptome | 193 | Y |
| F032864 | Metagenome / Metatranscriptome | 179 | Y |
| F033973 | Metagenome / Metatranscriptome | 176 | Y |
| F034121 | Metagenome / Metatranscriptome | 175 | N |
| F034173 | Metagenome / Metatranscriptome | 175 | Y |
| F035945 | Metagenome / Metatranscriptome | 171 | Y |
| F041476 | Metagenome | 160 | Y |
| F042086 | Metagenome / Metatranscriptome | 159 | Y |
| F046884 | Metagenome / Metatranscriptome | 150 | Y |
| F058549 | Metagenome | 135 | Y |
| F059220 | Metagenome / Metatranscriptome | 134 | Y |
| F068548 | Metagenome | 124 | Y |
| F069962 | Metagenome / Metatranscriptome | 123 | Y |
| F074536 | Metagenome / Metatranscriptome | 119 | N |
| F084523 | Metagenome / Metatranscriptome | 112 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| MGB_F548DK201A2YML | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 501 | Open in IMG/M |
| MGB_F548DK201A485G | Not Available | 502 | Open in IMG/M |
| MGB_F548DK201B0C8H | Not Available | 502 | Open in IMG/M |
| MGB_F548DK201B46AX | Not Available | 519 | Open in IMG/M |
| MGB_F548DK201B6PHB | All Organisms → cellular organisms → Bacteria | 517 | Open in IMG/M |
| MGB_F548DK201B7JMP | Not Available | 509 | Open in IMG/M |
| MGB_F548DK201BJ4GK | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 504 | Open in IMG/M |
| MGB_F548DK201BPE0G | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | 514 | Open in IMG/M |
| MGB_F548DK201BXPZF | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 521 | Open in IMG/M |
| MGB_F548DK201C8ZWL | Not Available | 516 | Open in IMG/M |
| MGB_F548DK201CMR2F | Not Available | 513 | Open in IMG/M |
| MGB_F548DK201D3R9S | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 516 | Open in IMG/M |
| MGB_F548DK201D8D6X | Not Available | 500 | Open in IMG/M |
| MGB_F548DK201DGRI5 | Not Available | 531 | Open in IMG/M |
| MGB_F548DK201DIG3K | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 507 | Open in IMG/M |
| MGB_F548DK201DJ6QW | Not Available | 513 | Open in IMG/M |
| MGB_F548DK201DTQVG | Not Available | 569 | Open in IMG/M |
| MGB_F548DK201ED3UI | Not Available | 520 | Open in IMG/M |
| MGB_F548DK201EQRES | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis | 525 | Open in IMG/M |
| MGB_F548DK201ERARZ | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | 502 | Open in IMG/M |
| MGB_F548DK202FNQV0 | Not Available | 532 | Open in IMG/M |
| MGB_F548DK202GHJ07 | Not Available | 501 | Open in IMG/M |
| MGB_F548DK202GPL1T | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 504 | Open in IMG/M |
| MGB_F548DK202H0A7N | All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes | 507 | Open in IMG/M |
| MGB_F548DK202HZDGV | Not Available | 503 | Open in IMG/M |
| MGB_F548DK202IM28S | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 515 | Open in IMG/M |
| MGB_F548DK202IRUAN | Not Available | 509 | Open in IMG/M |
| MGB_F548DK202IWKXQ | All Organisms → cellular organisms → Bacteria → Acidobacteria | 518 | Open in IMG/M |
| MGB_F5IW0KN15I465Z | Not Available | 502 | Open in IMG/M |
| MGB_F5IW0KN16JQF66 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria | 505 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| MGB_F548DK201A2YML | MGB_165650 | F020916 | DTESLQAKLDAGGNVFLPKLPRGRCYLTRGLWVSRDDTSITSDGACLVALGPGEGRLKRADGSLVRANAVFFVNHSEVRKPLPVRVSVSGLHITVPRATRMNGISITGHEVTLSRLRIDGAPLRNVVIGSGVPGAGGDDGRVSLTDSQLTALGVTSCRRSGRVGLRV |
| MGB_F548DK201A485G | MGB_956530 | F008140 | MMRILSRLMIAAGIFGTVVGTGATTAMAQGVYLQGPGFGVDVGRPAYRERHYRGYSDYNSPRFYSERRYHRGPYASERRWRDRDWD |
| MGB_F548DK201B0C8H | MGB_1016530 | F020264 | GVRAKRAAVDRSSPDWADEGLRKSALRVPESSKHQAEVLGEGVDAVPSLVRVLEEWGILS |
| MGB_F548DK201B46AX | MGB_323390 | F000442 | MRLFPHRFSDDRYHVQLGKEGPYIPVTDHRDLPSYLANGYSLHMSNGPQSPTSSLIKPELIQGWSDNPKDLFFLPFSLDPERNTRIVAPIEH |
| MGB_F548DK201B6PHB | MGB_1387010 | F024166 | VRSRFDERWARGFEVAEVVDEGSDARYKLKRRSDGSVLPTLFVDDEVREEKKRSMWWIS |
| MGB_F548DK201B7JMP | MGB_1137310 | F014456 | MASRAYVVDIAGGTATATVQIQASQTLKSFDVSWVNAAAGKIELSLSSTSQIGTAQPDNNVLARVSASAGANQMFAHFDLKQPVKPFQSIYVHCTGAGNLGTAVIR |
| MGB_F548DK201BJ4GK | MGB_1061650 | F007813 | GDAINPWLQAFHIFGWLLMAGVGVLLIAAVRFGRLAGHGLWFRAHAILLAIGGIAFGVFAWQYHLLGASLKF |
| MGB_F548DK201BPE0G | MGB_2163850 | F069962 | VADKTGIAQPPKGTAGTFAEGSALAFGYFKKAKLADKAPSALEAFMDPGNLEGISKAVEGRFVPIYRDHAKGDFWEKSKFAEMRKIAENGRVRNWPAPAQSWLDDVQDARYTLSDMMSKILKDGMSIEDAQAAAQTDMMDAYNKSQKKA |
| MGB_F548DK201BXPZF | MGB_1703940 | F034121 | MMRVLKPLQDKATTGAGKKLVLPEPRRVRFLIRGEGPVSAGAVTIECCPESTKAGRFWMELATIR |
| MGB_F548DK201C8ZWL | MGB_473560 | F001704 | MSTVAAAAQTADRIDYWIRRHVIQYCYGTHPFRSQSKFNPARDRRVGLLAIGQCLKEQYDALDSYARHLAALVEQLETQR |
| MGB_F548DK201CMR2F | MGB_654160 | F046884 | MRRYRKQRKQGLRPVRILLGETDIDALICMKLLKEDQRQDPKALQRAVLGLLYRAEEDLP |
| MGB_F548DK201D3R9S | MGB_2523720 | F032864 | VLVANIVVETLPGKARAVAERMEQIKGMGALSADGDRRVVATWTVPDCDTVEGLSEVLQAMNPEILCVYPSMV |
| MGB_F548DK201D8D6X | MGB_1552590 | F035945 | MSDFPHEFERISGLEAWALALATALVALIAIGIVPHVHW |
| MGB_F548DK201DGRI5 | MGB_165070 | F042086 | MKSKQIENIVVDEFRQQTYVVMAHRILTDGELYSAIRVEILKRKGVLTKGERLVITSELS |
| MGB_F548DK201DIG3K | MGB_933660 | F021195 | LSDYKVGQHVMVKLSGGRLVDAEXKAVIETTEGIRLQVSFGEETARIYLWQVVEKLR |
| MGB_F548DK201DJ6QW | MGB_722920 | F000487 | QVVRRVLLRRNIAIAAETAQLVADAVQAALQPAAPSRPGRRRPRGPAAGGEPLF |
| MGB_F548DK201DTQVG | MGB_1514260 | F058549 | AMVLSLALAVPAHARESRTVYWVCDVPGEGEVTFVTAAEAARHGIDTANNHAGQVFYDQFGEECTVK |
| MGB_F548DK201ED3UI | MGB_3241970 | F002473 | MTVTDLPAIMGTVLIVAGLALVGIYTRFRSEGSEKSVQAGALLIVVGAVLVGGVAIRTPRKIGLSSRPHHSN |
| MGB_F548DK201EQRES | MGB_2621530 | F007592 | MYTRAYKLAVAVPPILWVALFLLFPYALMFVHSFFRVHDGTIVDDWNLDNYATL |
| MGB_F548DK201ERARZ | MGB_37750 | F059220 | VDGNLDRVFAKLDESRNHILSAGGLLPDWAAETVAAG |
| MGB_F548DK202FNQV0 | MGB_3544320 | F027952 | MRLTGFAAIEFAEKQGLTLNKKPDDTDGPREGLTVAEAEAIASEDEDLIYLDVPENQYANAPPTDFDPER |
| MGB_F548DK202GHJ07 | MGB_865900 | F000801 | MAGEGWTVKDLMEALKRFPAQAKVYYEMGPNGPGTIGEAGYVKVWGDEEMGVLLEK |
| MGB_F548DK202GPL1T | MGB_120250 | F084523 | VLLGTRDEQFLRLAEFLLTRNGFAVESTKKIANAVDLVWRQRLDVVVLDASDSLSEAARTAAAIEALHPQVGVLIVCDDERPKPSTGLPIMEKWEALE |
| MGB_F548DK202H0A7N | MGB_120160 | F027008 | QRPFRYPLRGGFGNLIIRFRTDGQLVEFSSTCIPNADRVQAALAGLTPKLTSDDAVNHVKTGNLTVTDANGRQQTLSLPASAVVEAKQMVVYAQPPPDRSTGLQIRLAWEVDVTNGPLSKVYLDAISGETIAAS |
| MGB_F548DK202HZDGV | MGB_511960 | F074536 | VHRRAEEIDETAKQWVRHRGLKLVFDHAEVVKCDISATANTLKSQDTPNLLSPVSNIRAITLKLYSRAPSSPVEIRPC |
| MGB_F548DK202IM28S | MGB_2711620 | F041476 | MLLLKSLRIGFVGLMLFVASAWAASSVLEGIVKDAKGHPIAGADIRIETKNGGKLLTT |
| MGB_F548DK202IRUAN | MGB_3287960 | F011015 | VASNVQSPLDSPNADFLYLYGRANLLTGNTDEASKAFGAAISKADANPSPANATIKREAVLGLAAVSVRTQRDRWKVLNHY |
| MGB_F548DK202IWKXQ | MGB_3431390 | F033973 | MENRVLGNSATTSSQTAVTRHEGRHVWVLTAYAVSGLALFGVLIYYVSAYIAQ |
| MGB_F5IW0KN15I465Z | MGB_127920 | F034173 | MSAPFRPARIRWGAATLRLAASSVASVPSGYERSLPPCDAGVSQPANAILPKGDL |
| MGB_F5IW0KN16JQF66 | MGB_2606760 | F068548 | LCDGPYDEDVDTISRELDGEKRTRMTQALGQKLYDEYRGVMLGMRSLTWALSKKVSGWQTLVYVPLENNYEYVS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |