2044078002: Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL

Overview

Basic Information

• IMG/M Taxon OID: 2044078002
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0045634 | Gp0051658 | Ga0011142
• Sample Name: Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Illinois, Urbana-Champaign
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 27992371
• Sequencing Scaffolds: 12
• Novel Protein Genes: 12
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	1
Not Available	5
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Promicromonosporaceae → Cellulosimicrobium → unclassified Cellulosimicrobium → Cellulosimicrobium sp. MM	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Switchgrass, Maize And Miscanthus Rhizosphere Microbial Communities From University Of Illinois Energy Farm, Urbana, Il
• Type: Host-Associated
• Taxonomy: Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass, Maize And Miscanthus Rhizosphere → Switchgrass, Maize And Miscanthus Rhizosphere Microbial Communities From University Of Illinois Energy Farm, Urbana, Il

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant rhizosphere

Location Information

• Location: UIUC Energy Farm, Urbana, Illinois 61801
• Coordinates
  • Lat. (^o): 40.109
  • Long. (^o): -88.204
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033889	Metagenome / Metatranscriptome	176	Y
F034536	Metagenome / Metatranscriptome	174	N
F035517	Metagenome / Metatranscriptome	172	Y
F035868	Metagenome / Metatranscriptome	171	Y
F037955	Metagenome / Metatranscriptome	167	N
F043428	Metagenome	156	Y
F071597	Metagenome / Metatranscriptome	122	Y
F071803	Metagenome	122	Y
F079905	Metagenome / Metatranscriptome	115	Y
F081188	Metagenome	114	Y
F083221	Metagenome / Metatranscriptome	113	Y
F098176	Metagenome	104	N

Associated Scaffolds

Scaffold	Taxonomy	Length
MGR_F548DK201B4CIE	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	513
MGR_F548DK201CWY9A	Not Available	513
MGR_F548DK201CZ84E	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	515
MGR_F548DK201D2O66	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Promicromonosporaceae → Cellulosimicrobium → unclassified Cellulosimicrobium → Cellulosimicrobium sp. MM	526
MGR_F548DK201ETIKM	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	502
MGR_F548DK202IIU16	Not Available	513
MGR_F548DK202IVPQ6	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	504
MGR_F548DK202J09QY	Not Available	500
MGR_F548DK202J3TSP	All Organisms → cellular organisms → Bacteria → Acidobacteria	527
MGR_F548DK202JYSTA	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	533
MGR_F5IW0KN15JE7TL	Not Available	515
MGR_F5IW0KN16JZPMG	Not Available	514

Sequences

Scaffold ID	Protein ID	Family	Sequence
MGR_F548DK201B4CIE	MGR_1301980	F035868	ARCRGEVVLSTWNAYLSHVKSVVTYSPRTGVARDSDVHLVGNRVVESYVEQAIFSTPGLDAGFQARLRRLRRNIDREEKQPVEGYRTLAGPAQARALLGVTQVLPPGHQELTRRATPTTILPVEVPMPALDGDSAPFDIAAAAALQVDQPAPSGVYPDGLLRTGFDGIQR
MGR_F548DK201CWY9A	MGR_1081720	F098176	EHQRDDGAARRKRNRMYLGLLQASVLEADGTINAGDATNVRTAMVDLHEALEAVTDADPIFAPQGLAVVSPTAGECYNAEQVSCGEAVDTHRSRRQQEPENPLWETVT
MGR_F548DK201CZ84E	MGR_293780	F071597	MTAIAVRFPDESVELDNVEEHRVLTTLEVIYEGGSL
MGR_F548DK201D2O66	MGR_205340	F037955	YAFLIEDHAVADPRSGSATGARITGEPAPVSVSDLHVGSSGRLRAVVTTIDGGQAVHLALWLNGKKLIDYTDRDNPYTRGYMGLYVESISDSPSTDAAEFDNFTAAQS
MGR_F548DK201ETIKM	MGR_1091950	F033889	AQAGIHLPATERLTHSSLLGVTTAIFLVASSGTTSLETTPTTDAARIATNAGFLLGNAHRCGVATDRVVKVGQTIRELIKATAKDDKEQEEATDRFATFFLLTALPDDGDTKLVASCNTVTSEFQKFEKHHVAGAPATTANTAPRSPASKATGAPWPPRYRPGDRRV
MGR_F548DK202IIU16	MGR_1111790	F043428	FQRDYECEVECCDHASTVVATKELATLREEVAEKMPGAKTTTGSFKPAEGSKEVHVDPSSSEAKRVRIGTSLSSK
MGR_F548DK202IVPQ6	MGR_1200160	F035517	MTSAIELAERAVAAADGDGVEAIVQAEHSGFARFA
MGR_F548DK202J09QY	MGR_939320	F079905	MAQFEYRVRVRLPSGHLLRPAPYLTSHPRRLGDLVSLPVRADGELQPGERFDWRVAAVEDDGKLLVLEFLRAA
MGR_F548DK202J3TSP	MGR_184430	F083221	MSFLDRFRKKTEDEASRIARLSRTGRMADGSIIDAASDAAGRIIQVTYTYT
MGR_F548DK202JYSTA	MGR_1091720	F081188	VDVQRLRSSDNADFERAVRNFVWTVTWHPALKDGAPVEAWTQMLFPPQKP
MGR_F5IW0KN15JE7TL	MGR_1643250	F071803	MAGMKSECPAAVHATEVVDIPSDDEADDMVEPPVSSRELAVVQSEARPSGGLPEGDLEWPYPEDPAKVWFVLWDS
MGR_F5IW0KN16JZPMG	MGR_378870	F034536	MVARDITLPVDPDEAWDALTDPELLEQWFGDGRREAVVEEAEPGERLVFWWWEEGEPGSRVELRLVAVPAG