NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1002329

Scaffold Ga0209296_1002329


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1002329 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13728
Total Scaffold Genes40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)35 (87.50%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000684Metagenome / Metatranscriptome938Y
F002935Metagenome519Y
F029434Metagenome / Metatranscriptome188Y
F030765Metagenome184Y
F076101Metagenome / Metatranscriptome118Y
F085708Metagenome / Metatranscriptome111Y
F087194Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0209296_100232913F085708GAGGMNRLLTTLVQIGIGIPALYCARLMWREISNDFREWDKTQ
Ga0209296_100232915F087194AGGMTLEEYKQYVEAQRLSSLAIALEALTKSKAIQEQQGVK
Ga0209296_100232917F029434GGAMNKYTFGVWLDIDAEDEDMALSLFDSVINNTFVKDSYCFEWKEVDNV
Ga0209296_100232918F076101GAGGMYKITLSYDGNAPHWQGDYYDEMQAWKAFFSFTDWGFANEFSTVNIYNPELKCYTKIFYREGQKVVEK
Ga0209296_100232930F002935AGGAMSNRSIGYTGNVLDGKKLAKIANDIYRAQYSNDFSECKVDDLLLIELEEKNVFGDPKYAVLCSEGVGWEQDSYGCLEIPTNIGQMGLWNGRVFISVDTVKSCQTIFKKDVSEYIRTFGDRLDRNCSLWQSKMSKEPTTVLG
Ga0209296_100232940F030765GAGMDTEKSFDKEFDVEETTKVIVDKAKAEVRSRYGNKKRHRQ
Ga0209296_10023295F000684AGGAMTLQGYTYQIGDLFTTSTTGVTGRIEKFIPMRNDVTKVMLRLANNQQRFAMVKTK
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Institute for Fundamental Biomedical Research
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