Scaffold Ga0209599_10002364

Overview

Basic Information

• Taxon OID: 3300027710
• Scaffold ID: Ga0209599_10002364
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7842
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (85.19%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (100.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002245	Metagenome / Metatranscriptome	578	Y
F003379	Metagenome / Metatranscriptome	490	Y
F015730	Metagenome / Metatranscriptome	252	Y
F017134	Metagenome / Metatranscriptome	242	Y
F020168	Metagenome / Metatranscriptome	225	Y
F021757	Metagenome	217	Y
F029434	Metagenome / Metatranscriptome	188	Y
F045755	Metagenome / Metatranscriptome	152	N
F050376	Metagenome / Metatranscriptome	145	Y
F101047	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209599_1000236410	F101047	GAG	MTKMKELYTQIFDCETCNGQGWQFFGNETDYDVEACDCNPLGFFQENK
Ga0209599_1000236414	F029434	AGG	MKKYTFGVWLDIDAEDENQALSLFDGVVKNTFVSDSYCFEWKEVADEIAV
Ga0209599_1000236416	F050376	AGAAGG	MNLEEYKAHVEAQRKESLLKAIATMSEANAKMSSLFNTKEAE
Ga0209599_1000236417	F021757	GGA	MMTRKDYTSTAEILSSYKDLIGDEFTYHDLVEDFAGMFAQDNPNFDPDRFLEACNK
Ga0209599_1000236422	F015730	AGGAG	MLTQKTLDAIVYEYQHGGVKSYHPELTTYERKALLKHLFSLPTYCACCVR
Ga0209599_1000236426	F003379	GGA	MKKIYALIALTATAVFSGLAMSKFLNWAGQQEDIFDFDLNEDIDNEQL
Ga0209599_100023643	F002245	AGG	MSNLMKVPHTVVFEAIIDLDKIPASLLPRLIALDEKSIQEMCKGATLHALAESKVLQIANENNSWAEVTIKEGN
Ga0209599_100023644	F020168	GAG	MTDMIGSVIAIILIGFLCSPILLVVYMWRGAKIDIDNDGKDDVPYRWEKQ
Ga0209599_100023646	F017134	GAGG	MELFTVACLNYEICGDKATFDTESEYEIYGDDYICAECYASEEMEFFETIGWADSDALASAGHGMDEDY
Ga0209599_100023649	F045755	AGGAG	MNQIAGMWICDNCDTLAVVSVLTDTIAIQQCKCVTNERETNV