Scaffold Ga0214921_10019147

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10019147
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7434
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (92.00%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002245	Metagenome / Metatranscriptome	578	Y
F007263	Metagenome / Metatranscriptome	354	Y
F017134	Metagenome / Metatranscriptome	242	Y
F019325	Metagenome / Metatranscriptome	230	Y
F020168	Metagenome / Metatranscriptome	225	Y
F029434	Metagenome / Metatranscriptome	188	Y
F045755	Metagenome / Metatranscriptome	152	N
F076101	Metagenome / Metatranscriptome	118	Y
F101047	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1001914711	F029434	AGG	MKKYTFGVWLDIDAEDENQALSLFDNVIKNNFVSDSYCFEWKEVADEIAI
Ga0214921_1001914715	F007263	AGG	MLDSKYIDQNKFYFIKDEMKLCCDEIQFVMVCKEHGEQMGCYYCEFDYNEKCGCDE
Ga0214921_1001914716	F101047	N/A	MTKMKELYTQIFECETCNGQGWQFFGNETDYDVEACDCNPLGFFQENK
Ga0214921_1001914717	F045755	AGGAG	MSKITGMWICDNCDTLAIVSVATDTIVIQQCKCVTNERETNV
Ga0214921_1001914718	F076101	GGA	MYKITLAYDGNAPHWQQDYANEFDAWKDFFAFVDWGFANEYSTVNIYNSEMKCFTRHFYREERKVVTVK
Ga0214921_1001914720	F017134	GAGG	MELFIVSCLNYEICGAQETFETESEYEVYGDDYICAECYASEEMEFFETVGWSDSDALASAGHGMDEDY
Ga0214921_1001914722	F020168	GAG	MYDVLGSLIGIVLILFLCSPIMLAVYMWRGAKIDIDNDGKEDLPNRW
Ga0214921_1001914723	F002245	AGG	MSNLMKVPHTVVFEAILDLDKIPASLLPRLIAMDSETITQMCKEATLHALGISNVLPLANDNNTWAEVTIAEGN
Ga0214921_100191474	F019325	AGGAG	MTQLTETLYSTIVHDFHNGGVKSSYGLDTYTRKALIRALLSSKGCECINCL