Scaffold Ga0211732_1061301

Overview

Basic Information

• Taxon OID: 3300020141
• Scaffold ID: Ga0211732_1061301
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 44174
• Total Scaffold Genes: 82
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 64 (78.05%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Associated Families: 12

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 10 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000369	Metagenome / Metatranscriptome	1222	Y
F000376	Metagenome / Metatranscriptome	1216	Y
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F008245	Metagenome / Metatranscriptome	336	N
F008814	Metagenome / Metatranscriptome	327	Y
F014017	Metagenome / Metatranscriptome	266	Y
F020166	Metagenome / Metatranscriptome	225	Y
F038246	Metagenome	166	Y
F038675	Metagenome / Metatranscriptome	165	Y
F040629	Metagenome / Metatranscriptome	161	Y
F105175	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211732_106130111	F008245	AGGAG	MAEDKNTLELISDITEFNDLHEFMQDEHLDRALSIVVKLLMNPDVPSAKAPLLIMELQAMSTKFAVMSSVYSTIAKDKAGTVNNNKKNVYYSVKESIDKLVDALKYVVRYNS
Ga0211732_106130117	F038675	N/A	MKFYQSKDWLYRRYVVQKKTVTEIGVECQVSAMTIQRYLEKFGLIKK
Ga0211732_106130121	F000369	AGAAG	MEIELADHFDRMNKVVEELLRGNNPTQIATLTGLKRAEVVGLIDQWKTVVHNDTSARERAKEAISGADQHYAMLIKEAWKTVEDADQAGQLSVKSGALKLIADIEGKRIGMLQEVGLLDNAELAGQIAESERKQEILVKILKEVTASCPKCKMEVAKRLSQITGIVEPIEIIEEASGV
Ga0211732_106130123	F000376	GGA	MSIYQEKAKECKCCGKHVPLPIVLKEFNETTLCPTTYYNVLEYKKLWEKLGHRPPGSLSKHFSEYVQTVVQSSMRAEGSIDG
Ga0211732_106130146	F040629	N/A	MNKYTISIEIKAEVLAFDEADARDYVSDIFGVDEEVLSVKIVSVKKK
Ga0211732_106130149	F000473	GGA	VIFINKDKDHFKHGINMWNGEPAKPVFYNADMKKRLWELDKPMLLLMDVVMYPDFLALRLYEDNFIQFDGIEKEKVIDYVSKAKKLLESYGVRVELEGKPAL
Ga0211732_106130150	F000671	GGA	MSEKILCYSCNKTKNSLNLKRSLLLPINLFMCQTCIDNKFEPKWVILIAGRQNGHEAVKEFIQKRRYIGEEITASELLI
Ga0211732_106130156	F008814	AGG	MDSKITVLEGIIKDIGEELYQKWYNALAIEDRTEEASKAMSVNAGETAIWVIQKFMDKFNKAADELKGE
Ga0211732_106130161	F014017	AGG	MDSIEKYLDGSHRKKIADEIRYLELPPEWRPHEVIKYIVRIIEKNNGIN
Ga0211732_106130164	F105175	AGGAG	MSDGKDLNGFTSPKVNDSTVWGNNEQYAADPKSAFPSTDVSNQAQAQGPK
Ga0211732_106130171	F020166	AGG	MPNKEPKIMKMDWRSLGYWPVYKDGKLTWEKDPKDD
Ga0211732_106130178	F038246	GGA	MDMGILDNFEAYLEAAETKDKCHYCQAIAKYNDLAEVDKDSYKVVGVCACHSFKGLSS