NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F105175

Metagenome / Metatranscriptome Family F105175

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F105175
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 50 residues
Representative Sequence MSDGKDLNGFTSPKVNDAPVWNGVQYAADPKPAFPATDKSSQDGAGLGNGGK
Number of Associated Samples 79
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 90.00 %
% of genes near scaffold ends (potentially truncated) 7.00 %
% of genes from short scaffolds (< 2000 bps) 33.00 %
Associated GOLD sequencing projects 74
AlphaFold2 3D model prediction Yes
3D model pTM-score0.19

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (75.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake
(20.000 % of family members)
Environment Ontology (ENVO) Unclassified
(44.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(66.000 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 10.00%    β-sheet: 0.00%    Coil/Unstructured: 90.00%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.19
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF136402OG-FeII_Oxy_3 8.00
PF00166Cpn10 5.00
PF01923Cob_adeno_trans 4.00
PF13186SPASM 4.00
PF00085Thioredoxin 4.00
PF02675AdoMet_dc 3.00
PF09834DUF2061 3.00
PF01053Cys_Met_Meta_PP 3.00
PF04973NMN_transporter 2.00
PF13578Methyltransf_24 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG0234Co-chaperonin GroES (HSP10)Posttranslational modification, protein turnover, chaperones [O] 5.00
COG0075Archaeal aspartate aminotransferase or a related aminotransferase, includes purine catabolism protein PucGAmino acid transport and metabolism [E] 3.00
COG01567-keto-8-aminopelargonate synthetase or related enzymeCoenzyme transport and metabolism [H] 3.00
COG0399dTDP-4-amino-4,6-dideoxygalactose transaminaseCell wall/membrane/envelope biogenesis [M] 3.00
COG0436Aspartate/methionine/tyrosine aminotransferaseAmino acid transport and metabolism [E] 3.00
COG0520Selenocysteine lyase/Cysteine desulfuraseAmino acid transport and metabolism [E] 3.00
COG0626Cystathionine beta-lyase/cystathionine gamma-synthaseAmino acid transport and metabolism [E] 3.00
COG1586S-adenosylmethionine decarboxylaseAmino acid transport and metabolism [E] 3.00
COG1921Seryl-tRNA(Sec) selenium transferaseTranslation, ribosomal structure and biogenesis [J] 3.00
COG1982Arginine/lysine/ornithine decarboxylaseAmino acid transport and metabolism [E] 3.00
COG2008Threonine aldolaseAmino acid transport and metabolism [E] 3.00
COG2873O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependentAmino acid transport and metabolism [E] 3.00
COG4100Cystathionine beta-lyase family protein involved in aluminum resistanceInorganic ion transport and metabolism [P] 3.00
COG3201Nicotinamide riboside transporter PnuCCoenzyme transport and metabolism [H] 2.00

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A75.00 %
All OrganismsrootAll Organisms25.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001968|GOS2236_1049874Not Available1580Open in IMG/M
3300002408|B570J29032_109955222All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage7142Open in IMG/M
3300003413|JGI25922J50271_10001374Not Available7089Open in IMG/M
3300003499|JGI25930J51415_1019786All Organisms → Viruses → Predicted Viral1274Open in IMG/M
3300004112|Ga0065166_10235824Not Available731Open in IMG/M
3300005417|Ga0068884_1456623Not Available778Open in IMG/M
3300005527|Ga0068876_10099642All Organisms → Viruses → Predicted Viral1734Open in IMG/M
3300005527|Ga0068876_10205348Not Available1142Open in IMG/M
3300005528|Ga0068872_10011082All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage6371Open in IMG/M
3300005528|Ga0068872_10693674Not Available535Open in IMG/M
3300005662|Ga0078894_10004379All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage10797Open in IMG/M
3300005662|Ga0078894_10020967All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage5283Open in IMG/M
3300005662|Ga0078894_10036256All Organisms → Viruses → Predicted Viral4099Open in IMG/M
3300005662|Ga0078894_10421596Not Available1204Open in IMG/M
3300005805|Ga0079957_1027603All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage3815Open in IMG/M
3300006030|Ga0075470_10131412Not Available738Open in IMG/M
3300007169|Ga0102976_1025988Not Available1169Open in IMG/M
3300007171|Ga0102977_1109189Not Available1224Open in IMG/M
3300007708|Ga0102859_1000122Not Available16904Open in IMG/M
3300008107|Ga0114340_1004257Not Available7811Open in IMG/M
3300008110|Ga0114343_1034112All Organisms → Viruses → Predicted Viral2096Open in IMG/M
3300008116|Ga0114350_1002782All Organisms → cellular organisms → Bacteria9314Open in IMG/M
3300008120|Ga0114355_1043593All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2103Open in IMG/M
3300008510|Ga0110928_1038192Not Available550Open in IMG/M
3300010354|Ga0129333_10980630Not Available711Open in IMG/M
3300011268|Ga0151620_1155312Not Available702Open in IMG/M
3300012717|Ga0157609_1081950Not Available508Open in IMG/M
3300012968|Ga0129337_1111767Not Available548Open in IMG/M
3300013087|Ga0163212_1077878Not Available1083Open in IMG/M
(restricted) 3300013126|Ga0172367_10066917All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2714Open in IMG/M
(restricted) 3300013126|Ga0172367_10400157Not Available777Open in IMG/M
3300017788|Ga0169931_10042757All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage5051Open in IMG/M
3300017788|Ga0169931_10073309All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage3458Open in IMG/M
3300020048|Ga0207193_1012504All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage11637Open in IMG/M
3300020141|Ga0211732_1061301Not Available44174Open in IMG/M
3300020519|Ga0208223_1009676All Organisms → Viruses → Predicted Viral1561Open in IMG/M
3300020524|Ga0208858_1018337Not Available1092Open in IMG/M
3300020566|Ga0208222_1041886Not Available826Open in IMG/M
3300021141|Ga0214163_1035422Not Available1387Open in IMG/M
3300021961|Ga0222714_10005018Not Available12727Open in IMG/M
3300021961|Ga0222714_10101021All Organisms → Viruses → Predicted Viral1825Open in IMG/M
3300021961|Ga0222714_10479761Not Available642Open in IMG/M
3300024306|Ga0255148_1056049Not Available693Open in IMG/M
3300024346|Ga0244775_10103393All Organisms → Viruses → Predicted Viral2421Open in IMG/M
3300024482|Ga0255265_1088040Not Available599Open in IMG/M
3300024533|Ga0256299_1129068Not Available504Open in IMG/M
3300024867|Ga0255267_1064795Not Available850Open in IMG/M
3300025585|Ga0208546_1081262Not Available740Open in IMG/M
3300027697|Ga0209033_1015960All Organisms → Viruses → Predicted Viral3171Open in IMG/M
3300027710|Ga0209599_10003595Not Available5887Open in IMG/M
3300027759|Ga0209296_1003711Not Available10325Open in IMG/M
3300027769|Ga0209770_10005669All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage5910Open in IMG/M
3300027769|Ga0209770_10024776All Organisms → Viruses → Predicted Viral2627Open in IMG/M
3300028025|Ga0247723_1014961All Organisms → Viruses → Predicted Viral2805Open in IMG/M
3300029930|Ga0119944_1000382All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage7747Open in IMG/M
3300029930|Ga0119944_1045944Not Available531Open in IMG/M
3300031758|Ga0315907_10173646All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1817Open in IMG/M
3300031758|Ga0315907_10651608Not Available809Open in IMG/M
3300033557|Ga0316617_100771191Not Available917Open in IMG/M
3300034013|Ga0334991_0000390All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage43050Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake20.00%
FreshwaterEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater16.00%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater11.00%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater6.00%
Freshwater, PlanktonEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton5.00%
FreshwaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater4.00%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous4.00%
EstuarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine4.00%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater3.00%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water3.00%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake2.00%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake2.00%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater2.00%
AquaticEnvironmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic2.00%
Freshwater LenticEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic1.00%
Freshwater And SedimentEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment1.00%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake1.00%
LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Lake1.00%
Freshwater Lake SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment1.00%
FreshwaterEnvironmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater1.00%
FreshwaterEnvironmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater1.00%
Water BodiesEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Water Bodies1.00%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient1.00%
Estuary WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water1.00%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine1.00%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine1.00%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil1.00%
Deep SubsurfaceEnvironmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface1.00%
Deep Subsurface SedimentEnvironmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment1.00%
EstuaryHost-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary1.00%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001968Marine microbial communities from Lake Gatun, Panama - GS020EnvironmentalOpen in IMG/M
3300002408Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)EnvironmentalOpen in IMG/M
3300002835Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)EnvironmentalOpen in IMG/M
3300003413Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DDEnvironmentalOpen in IMG/M
3300003499Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.DNEnvironmentalOpen in IMG/M
3300004096Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (version 2)EnvironmentalOpen in IMG/M
3300004112Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 2)EnvironmentalOpen in IMG/M
3300004795Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300005417Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300005517Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (version 4)EnvironmentalOpen in IMG/M
3300005527Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaGEnvironmentalOpen in IMG/M
3300005528Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaGEnvironmentalOpen in IMG/M
3300005585Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ON33MSRFEnvironmentalOpen in IMG/M
3300005662Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)EnvironmentalOpen in IMG/M
3300005805Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USAEnvironmentalOpen in IMG/M
3300006030Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNAEnvironmentalOpen in IMG/M
3300006484Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535EnvironmentalOpen in IMG/M
3300007169Combined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Diel cycle-Bottom layer) 8 sequencing projectsEnvironmentalOpen in IMG/M
3300007171Combined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Diel cycle-Surface layer) 8 sequencing projectsEnvironmentalOpen in IMG/M
3300007708Estuarine microbial communities from the Columbia River estuary - metaG 1371B-02EnvironmentalOpen in IMG/M
3300007954Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1373B_0.2umEnvironmentalOpen in IMG/M
3300008055Metatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393Host-AssociatedOpen in IMG/M
3300008107Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NAEnvironmentalOpen in IMG/M
3300008110Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-3-NAEnvironmentalOpen in IMG/M
3300008116Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NAEnvironmentalOpen in IMG/M
3300008120Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-3-NAEnvironmentalOpen in IMG/M
3300008510Microbial Communities in Water bodies, Singapore - Site RAEnvironmentalOpen in IMG/M
3300010354Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNAEnvironmentalOpen in IMG/M
3300011268Sub-surface freshwater microbial communities from San Francisco Estuary Delta, California, USA . Combined Assembly of Gp0173482, Gp0175554, Gp0175555EnvironmentalOpen in IMG/M
3300012000Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007AEnvironmentalOpen in IMG/M
3300012667Freshwater microbial communities from Maskinonge River, Ontario, Canada - S15EnvironmentalOpen in IMG/M
3300012717Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES135 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012968Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.2_RNA1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012970Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.2_RNA2 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300013087Freshwater microbial communities from Lake Malawi, Central Region, Malawi to study Microbial Dark Matter (Phase II) - Malawi_45m_30LEnvironmentalOpen in IMG/M
3300013126 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_10mEnvironmentalOpen in IMG/M
3300013131 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_10mEnvironmentalOpen in IMG/M
3300017788Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20LEnvironmentalOpen in IMG/M
3300020048Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915EnvironmentalOpen in IMG/M
3300020074Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015017 Mahale Deep Cast 200mEnvironmentalOpen in IMG/M
3300020141Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1EnvironmentalOpen in IMG/M
3300020499Freshwater microbial communities from Lake Mendota, WI - 14SEP2009 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300020519Freshwater microbial communities from Lake Mendota, WI - 07OCT2009 deep hole epilimnion ns (SPAdes)EnvironmentalOpen in IMG/M
3300020524Freshwater microbial communities from Lake Mendota, WI - 16NOV2012 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300020542Freshwater microbial communities from Lake Mendota, WI - 05NOV2012 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300020552Freshwater microbial communities from Lake Mendota, WI - 06JUL2012 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300020566Freshwater microbial communities from Lake Mendota, WI - 13SEP2009 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300021141Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnionEnvironmentalOpen in IMG/M
3300021961Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3DEnvironmentalOpen in IMG/M
3300024306Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepB_8hEnvironmentalOpen in IMG/M
3300024346Whole water sample coassemblyEnvironmentalOpen in IMG/M
3300024351Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepA_0hEnvironmentalOpen in IMG/M
3300024481Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepC_0h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024482Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepA_0h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024484Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepB_8h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024533Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Miss_RepC_8h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024561Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_UVDOM_RepA_8d (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024864Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atlam_RepA_8h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024867Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Yuk_RepA_8h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300025585Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300026569Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepA_8d (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300026572Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atl_RepB_8h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300026573Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Yuk_RepC_8h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300027123Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Yuk_RepA_8dEnvironmentalOpen in IMG/M
3300027697Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.DN (SPAdes)EnvironmentalOpen in IMG/M
3300027710Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)EnvironmentalOpen in IMG/M
3300027759Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027769Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)EnvironmentalOpen in IMG/M
3300027805Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)EnvironmentalOpen in IMG/M
3300028025Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FCEnvironmentalOpen in IMG/M
3300028112Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepB_8h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300028275Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atl_RepB_8dEnvironmentalOpen in IMG/M
3300029930Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727EnvironmentalOpen in IMG/M
3300031758Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123EnvironmentalOpen in IMG/M
3300033557Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D2_BEnvironmentalOpen in IMG/M
3300034013Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Jun2018-rr0034EnvironmentalOpen in IMG/M
3300034020Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2015-rr0055EnvironmentalOpen in IMG/M
3300034066Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087EnvironmentalOpen in IMG/M
3300034200Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2013-rr0190EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
GOS2236_104987423300001968MarineMADGKDLNGFTSPKVNDSSVWNGVQYASDPAAAFPSTDKSTQDGAGLGQGGK*
B570J29032_10995522263300002408FreshwaterMSDGKDLNGFTSPKVDDSTVWGNNEQYAADPKAAFPSTDVSNQAQAQGPK*
B570J40625_10099457423300002835FreshwaterSPKVNDSTVWGNNEQYAADPKSAFPSTDVSNQAQAQGPK*
JGI25922J50271_1000137453300003413Freshwater LakeMSDGKDLNGFTSPXVNDSTVWGNNEQYAADPKAAFPSTDVSNQAQAQGPK*
JGI25930J51415_101978663300003499Freshwater LakeMADGKDLNGFTSPKVNDASVWNGVQYAADPASAFPATDKSSQDGAGLGNGGK*
Ga0066177_1028809633300004096Freshwater LakeNMSDGKDLNGFTSPKVNDSTVWGNNEQYAADPKAAFPSTDVSNQAQAQGPK*
Ga0065166_1023582433300004112Freshwater LakeMADGKDLNGFTSPKVNDAPVWATESYTEAPAAAFPATDKSSQDGAGLGNGG
Ga0007756_1165450533300004795Freshwater LakeMSDGKDLNGFTSPKVNDSTVWGNNEQYAADPKAAFPSTDVSNQAQAQ
Ga0068884_145662313300005417Freshwater LakeMADGKDLNGFTSPKVNDASVWSGEQYAADPAAAFPATDMSNQASAQGPK*
Ga0070374_1047799913300005517Freshwater LakeMSDGKDLNGFTSPKVNDSTVWGNNEQYASDPKAAFPSTDVSNQAQAQGPK*
Ga0068876_1009964213300005527Freshwater LakeMADGKDLNGFTSPKVNDASVWNGVQYAADPASAFPATDKSSQDGSGLGNGGK*
Ga0068876_1020534833300005527Freshwater LakeMADGKDLNGFTGPKVNDAPVWNGVQYAADPKPAFPATDKSSQDGAGLGNGGK*
Ga0068872_10011082103300005528Freshwater LakeMSDGKNLNGFNETKPSAAGVWNGVQYASDPKQAFPATDKSSQDGAGLNNGGK*
Ga0068872_1025444453300005528Freshwater LakeMSDGKDLNGFTSPKVNDAPVWNGVQYAADPKPAFPATDKSSQDGAGLGNGGK*
Ga0068872_1069367423300005528Freshwater LakeMSDGINLGGFAAPKVNDATVWNGEQYAADPAAAFPAQDKSTQGPAGTTKK*
Ga0049084_1004474023300005585Freshwater LenticMSDGKDLNGFTSPKVNDSTVWGNNEQYAADPKAAFPSTDVSNQAQAQGPK*
Ga0078894_1000437963300005662Freshwater LakeMSDGKDLNGFTSPKVNDSTVWGNNEQYAADPKSAFPSTDVSNQAQAQGPK*
Ga0078894_1002096733300005662Freshwater LakeMADGINLDGFTAPKVEAPGSWNGEQYAADPASAFPASDVSNQASAQGPK*
Ga0078894_1003625693300005662Freshwater LakeMADGKDLNGFTSPKVNDAPVWATESYTEAPAAAFPATDKSSQDGAGLGNGGK*
Ga0078894_1042159613300005662Freshwater LakeMDGKDLNGFTAPKVNDAPVWDGVQYAADPASAFPATDKSSQDGAGLGNGGK*
Ga0078894_1123132923300005662Freshwater LakeMSDGKDLNGFTSPKVNDATVWGNNEQYAADPKAAFPSTDVSNQAQAQGPK*
Ga0079957_102760353300005805LakeMSDGKDLNGFTSPKVNDASVWNGVQYAADPKPAFPATDKSSQDSAGLGNGGK*
Ga0075470_1013141223300006030AqueousMAEGINLDGFTGPKVNDAPVWNGEQYAADPAAAFPAEDKSTQGPAGTTKK*
Ga0070744_1004207853300006484EstuarineMSDGKDLNGFTSPKVNDSTVWGNNEQYAADPKAAFPSTDVSNQAQGQGPK*
Ga0102976_102598843300007169Freshwater LakeMSDGKDLNGFTSPKVSDTPVWNGVQYAADPASAFPSTDKSTQDGAGLGQGGK*
Ga0102977_107610153300007171Freshwater LakeMSDGKDLNGFTSPKVSDTPVWNGVQYAADPAAAFPSTDKSTQDGAGLGQGGK*
Ga0102977_110918943300007171Freshwater LakeMADGINLDGFTGPKVNDAPVWNGEQYAADPAAAFPAEDKSTQGPAGTTKK*
Ga0102859_1000122263300007708EstuarineMSDGKDLNGFTSPKVNDSTVWGSNEQYAADPKAAFPSTDVSNQAQAQGPK*
Ga0105739_116876813300007954Estuary WaterNMSDGKDLNGFTSPKVNDSTVWGSNEQYAADPKAAFPSTDVSNQAQAQGPK*
Ga0108970_1126293123300008055EstuaryMADGINLDGFTSPKVNDASVWNGVQYAADPASAFPATDKSSQDGSGLGNGGK*
Ga0114340_100425783300008107Freshwater, PlanktonMADGKDLNGFTSPKVNDSSVWNGVQYAADPASAFPSTDKSSQDGAGLGNGGK*
Ga0114340_104352763300008107Freshwater, PlanktonMSDGKDLNGFTSPKVNDAPVWTNNEQYAADPKAAFPASDVSNQAQAQGPK*
Ga0114343_103411243300008110Freshwater, PlanktonMADGKDLNGFTSSKVNDASVWNGVQYAADPASAFPAADKSSQDGAGLGNGGK*
Ga0114350_1002782183300008116Freshwater, PlanktonMAEGINLDGFTGPKVNAAPVWNGEQYAADPAAAFPAEDKSTQGPAGTTKK*
Ga0114355_104359333300008120Freshwater, PlanktonMADGKDLNGFTSPKVNDAPVWNGVQYASDPAAAFPATDKSTQDGAGLGQGGK*
Ga0110928_103819213300008510Water BodiesMAEGINLDGFTGPKVNDAPVWNGEQYAADPATAFPAEDKSTQGPAGTTKK*
Ga0129333_1098063023300010354Freshwater To Marine Saline GradientMSDGKDLNGFTSPKVNDAPVWNGVQYASDPKPAFPATDKSSQDGAGLNNGGK*
Ga0151620_115531233300011268FreshwaterMDGKDLNGFTAPKVNDAPVWAPESYTEAPAAAFPATDKSSQDGAGLGNGGK*
Ga0119951_114982823300012000FreshwaterMADGKDLNGFTSPKVNDATVWNGVQYAADPASAFPAADKSSQDGAGL
Ga0157208_1003515233300012667FreshwaterMSDGKDLNGFTSPKVNDSTVWGSNEQYAADPKSAFPSTDVSNQAQAQGPK*
Ga0157609_108195013300012717FreshwaterMSDGKDLNGFTSPKVNDAPVWTNNEQYAADPKAAFPASDVSSQAQAQGPK*
Ga0129337_111176713300012968AqueousMADGKDLNGFTSPKVNDAPVWNGVQYAADPKPAFPSTDKSSQDGAGLGNGGK*
Ga0129338_126386533300012970AqueousMADGKDVNGFTSPKVKDASGWNGVQYAADPASAFPATDKSSQDGSGLGNGGK*
Ga0163212_107787813300013087FreshwaterMSDGKDLNGFTSPKVNDTPVWSGEQYAADPKAAFPAEDKSTQGPAGTTKK*
(restricted) Ga0172367_1006691743300013126FreshwaterMTDGKDLNGFTSPKVNDASPWSSNEQYAQDPKAAFPSTDKSSQDGAGLGNGGK*
(restricted) Ga0172367_1040015733300013126FreshwaterMSDGINLDGFTAPKVNDAPVWNGEQYAADPAAAFPAEDKSTQGPAGTTKK*
(restricted) Ga0172373_1021406643300013131FreshwaterMADGINLDGFTAPKVNDAPVWNGEQYAADPAAAFPAEDKSTQGPAGTTKK*
Ga0169931_1004275743300017788FreshwaterMTDGKDLNGFTSPKVNDASPWSSNEQYAQDPKAAFPSTDKSSQDGAGLGNGGK
Ga0169931_1007330933300017788FreshwaterMSDGKDLNGFTSPKVSDTPVWNGVQYAADPASAFPSTDKSTQDGAGLGQGGK
Ga0207193_1012504213300020048Freshwater Lake SedimentMSDGKDLNGFTSPKVNDSTVWGNNEQYAADPKAAFPSTDVSNQAQAQGPK
Ga0194113_1100827523300020074Freshwater LakeMSDGKDLNGFTSPKVNDTPVWSGEQYAADPKAAFPAEDKSTQGPAGTTKK
Ga0211732_1061301643300020141FreshwaterMSDGKDLNGFTSPKVNDSTVWGNNEQYAADPKSAFPSTDVSNQAQAQGPK
Ga0208084_102491313300020499FreshwaterMSDGKNLNGFNETKPSAAGVWNGVQYASDPKQAFPATDKSSQDGAGLNNGGK
Ga0208223_100967613300020519FreshwaterMADGKDLNGFTSPKVNDASVWSGEQYAADPAAAFPATDMSNQASAQGPK
Ga0208858_101833723300020524FreshwaterMSDGKDLNGFTSPKVDDSTVWGNNEQYAADPKAAFPSTDVSNQAQAQGPK
Ga0208857_100337073300020542FreshwaterDLNGFTSPKVDDSTVWGNNEQYAADPKAAFPSTDVSNQAQAQGPK
Ga0207940_104958713300020552FreshwaterMSDGKDLNGFTSPKVNDSTVWGNNEQYAADPKAAFPSTDVSNQAQAQG
Ga0208222_104188643300020566FreshwaterNKMADGKDLNGFTSPKVNDASVWSGEQYAADPAAAFPATDMSNQASAQGPK
Ga0214163_103542243300021141FreshwaterMTDGINLDGFTAPKVEAPGSWNGEQYAADPASAFPASDVSNQASAQGPK
Ga0222714_1000501893300021961Estuarine WaterMDGKDLNGFTAPKVNDAPVWAPESYTEAPAAAFPATDKSSQDGAGLGNGGK
Ga0222714_1010102173300021961Estuarine WaterMADGKDLNGFTSPKVNDASVWNGEQYAADPAAAFPATDVSNQASAQGPK
Ga0222714_1047976133300021961Estuarine WaterMSDGKDLNGFTSPKVNDAPVWTNNEQYAADPKAAFPASDVSNQAQAQGPK
Ga0255148_105604913300024306FreshwaterYRRNKMADGINLDGFTGPKVNDAPVWNGVQYAADPKPAFPATDKSSQDGAGLGNGGK
Ga0244775_1009780923300024346EstuarineMSDGKDLNGFTSPKVNDSTVWGNNEQYAADPKAAFPSTDVSNQAQGQGPK
Ga0244775_1010339373300024346EstuarineMDGKDLNGFTAPKVNDAPVWDGVQYAADPASAFPATDKSSQDGAGLGNGGK
Ga0244775_1052227013300024346EstuarineMSDGKDLNGFTSPKVNDSTVWGSNEQYAADPKAAFPSTDVSNQAQAQGPK
Ga0255141_100949533300024351FreshwaterMTDGINLDGFTSPKVNDATVWNGEQYAADPAAAFPAEDKSTQGPAGTTKK
Ga0255141_106611813300024351FreshwaterMADGKDLNGFTSPKVNDAPVWNGVQYASDPAAAFPATDKSTQDGAGLGQGGK
Ga0256330_103976823300024481FreshwaterMADGINLDGFTGPKVNDAPVWNGEQYAADPDKNFSATDKSTQDGAGLGNGGK
Ga0255265_108804033300024482FreshwaterIGDIKMADGINLDGFTSPKVNDATVWNGEQYAADPAAAFPAEDKSTQGPAGTTKK
Ga0256332_109111533300024484FreshwaterADGKDLNGFTSPKVNDAPVWNGVQYASDPAAAFPATDKSTQDGAGLGQGGK
Ga0256299_112906813300024533FreshwaterADGKDLNGFTSPKVNDASVWNGVQYAADPASAFPATDKSSQDGSGLGNGGK
Ga0255288_112199733300024561FreshwaterRNKMADGKDLNGFTGPKVNDAPVWNGVQYAADPKPAFPATDKSSQDGAGLGNGGK
Ga0255271_111683613300024864FreshwaterADGKDLNGFTGPKVNDAPVWNGVQYAADPKPAFPATDKSSQDGAGLGNGGK
Ga0255267_106479523300024867FreshwaterMTDGKDLNGFTGPKVNDAPVWNGVQYAADPKPAFPATDKSSQDGSGLGNGGK
Ga0208546_108126233300025585AqueousMAEGINLDGFTGPKVNDAPVWNGEQYAADPAAAFPAEDKSTQGPAGTTKK
Ga0255277_114787913300026569FreshwaterMADGKDLNGFTSPKVNDAPVWNGVQYAADPKPAFPSTDKSSQDGAGLGNGGK
Ga0255270_115755613300026572FreshwaterKPIGENKMADGKDLNGFTSPKVNDAPVWNGVQYASDPAAAFPATDKSTQDGAGLGQGGK
Ga0255269_119988033300026573FreshwaterGKDLNGFTSPKVNDAPVWNGVQYASDPAAAFPATDKSTQDGAGLGQGGK
Ga0255090_102894513300027123FreshwaterMADGKDLNGFTSPKVNDASVWSGEQYAADPAAAFPATDMSNQAS
Ga0209033_101596053300027697Freshwater LakeMADGKDLNGFTSPKVNDASVWNGVQYAADPASAFPATDKSSQDGAGLGNGGK
Ga0209599_1000359533300027710Deep SubsurfaceMADGKDLNGFTSPKVNDAPVWATESYTEAPAAAFPATDKSSQDGAGLGNGGK
Ga0209296_1003711223300027759Freshwater LakeMSDGKDLNGFTSPKVEAASTWNGEQYAADPASAFPSTDKSTQDGSGVGNNGK
Ga0209770_1000566923300027769Freshwater LakeMSDGKDLNGFTSPKVNDSTVWGNNEQYASDPKAAFPSTDVSNQAQAQGPK
Ga0209770_10024776103300027769Freshwater LakeMADGINLDGFTAPKVEAPGSWNGEQYAADPASAFPASDVSNQASAQGPK
Ga0209229_1040442713300027805Freshwater And SedimentMSDGKDLNGFTSPKVNNSTVWGNNEQYAADPKSAFPASDVSNQ
Ga0247723_101496133300028025Deep Subsurface SedimentMADGKDLNGFTSPKVNDASVWTGEQYAADPAAAFPATDMSNQASAQGPK
Ga0256335_120136733300028112FreshwaterADGINLDGFTGPKVNDAPVWNGVQYAADPKPAFPATDKSSQDGAGLGNGGK
Ga0255174_107374513300028275FreshwaterMADGINLDGFTGPKVNDAPVWNGVQYAADPKPAFPATDKSSQDGAGLGNGGK
Ga0119944_1000382213300029930AquaticMADGKDLNGFTSPKVNDASPWSSNEQYAQDPKAAFPSTDKSSQDGAGLGNGGK
Ga0119944_104594423300029930AquaticMSDGKDLNGFTSPKVSDTPVWNGVQYAADPAAAFPSTDKSTQDGAGLGQGGK
Ga0315907_1017364663300031758FreshwaterMSDGKDLNGFTSPKVNDAPVWNGVQYAADPKPAFPATDKSSQDGAGLGNGGK
Ga0315907_1050072213300031758FreshwaterMAEGINLDGFTGPKVNAAPVWNGEQYAADPAAAFPAEDKSTQGPAGTTKK
Ga0315907_1065160823300031758FreshwaterMSDGINLGGFAAPKVNDATVWNGEQYAADPAAAFPAQDKSTQGPAGTTKK
Ga0315907_1086013133300031758FreshwaterDGKDLNGFTGPKVNDAPVWNGVQYAADPKPAFPATDKSSQDGAGLGNGGK
Ga0316617_10077119113300033557SoilKDLNGFTSPKVKDAPVRNGVQNAPDPAAAFPATHKTSQDGAGLGNGGK
Ga0334991_0000390_2_1483300034013FreshwaterDGKDLNGFTSPKVNDSTVWGNNEQYAADPKAAFPSTDVSNQAQAQGPK
Ga0335002_0423146_29_1813300034020FreshwaterMSDGKDLNGFTSPKVNDAPVWTNNEQYAADPKAAFPASDVSSQAQAQGPK
Ga0335019_0257132_989_11083300034066FreshwaterSPKVNDSTVWGNNEQYAADPKAAFPSTDVSNQAQAQGPK
Ga0335065_0745966_3_1253300034200FreshwaterMSDGKDLNGFTSPKVNDATVWGNNEQYAADPKAAFPSTDVS

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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