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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300012663 Open in IMG/M |
| Scaffold ID | Ga0157203_1001153 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Indian River, Ontario, Canada - S50 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Molecular Research LP (MR DNA) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6659 |
| Total Scaffold Genes | 20 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (85.00%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Warsaw, Ontario | |||||||
| Coordinates | Lat. (o) | 44.42735 | Long. (o) | -78.1359 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002245 | Metagenome / Metatranscriptome | 578 | Y |
| F003690 | Metagenome / Metatranscriptome | 473 | Y |
| F006744 | Metagenome / Metatranscriptome | 365 | Y |
| F017134 | Metagenome / Metatranscriptome | 242 | Y |
| F045755 | Metagenome / Metatranscriptome | 152 | N |
| F076101 | Metagenome / Metatranscriptome | 118 | Y |
| F085710 | Metagenome / Metatranscriptome | 111 | Y |
| F097310 | Metagenome / Metatranscriptome | 104 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0157203_100115310 | F097310 | GGAG | MGKVKQLLDEILNCDLCNGKGWLFAGNTLDYDVEACECNPNEFEVNY* |
| Ga0157203_100115312 | F006744 | AGAAGG | MNLDEFRAYVEATRQASKAEALSVLSAKMSITTTTKGDN* |
| Ga0157203_100115316 | F003690 | AGGAG | MINDGLQLLISEYGFELDSFLGAIYLPWHTIIITTLAVIAYKIYKRKKNK* |
| Ga0157203_100115318 | F085710 | AGG | MLLLEVGSNLMNDYYDEIYLDIYLEFGADSVSDPAYAEQLAKDKGVR* |
| Ga0157203_10011533 | F002245 | N/A | MTVPHTVTFEAVIDLDKIPAHLLPALIALDEKSIQEMCKGATVHALGMSNTLEVANENNTWAELTVKEGN* |
| Ga0157203_10011536 | F017134 | GAGG | MELFTVSCLNYEICGAQETFHDESEYEVYGDDYTCAECYASEEMEFYELTGWADSDALASAGHGMDEDY* |
| Ga0157203_10011538 | F076101 | GGA | MYKITLAYDGNAPHWQGDYYDEMEAWSAFFKFTDWGFANEFSTVNIYTPELKCYTKNFYRSGMVATK* |
| Ga0157203_10011539 | F045755 | GAGG | MSEIAGMWICDNCDTLAIVSVLTDTIQITQCKCVTNERETNV* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |