Metagenome / Metatranscriptome Family F102190

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F102190
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	42 residues
Representative Sequence	VTECVVKPLRDVKVTGSKPAGTKNPTMLRVGVAQAGCDPRVILTA
Number of Associated Samples	15
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	75.25 %
% of genes near scaffold ends (potentially truncated)	45.54 %
% of genes from short scaffolds (< 2000 bps)	94.06 %
Associated GOLD sequencing projects	15
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.17

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (94.059 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (84.158 % of family members)
Environment Ontology (ENVO)	Unclassified (99.010 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (95.050 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 8.22% β-sheet: 0.00% Coil/Unstructured: 91.78%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.17
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.17
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF04398	DUF538	0.99
PF00060	Lig_chan	0.99
PF00295	Glyco_hydro_28	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG0834	ABC-type amino acid transport/signal transduction system, periplasmic component/domain	Signal transduction mechanisms [T]	1.98
COG5434	Polygalacturonase	Carbohydrate transport and metabolism [G]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.06 %
All Organisms	root	All Organisms	5.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.06 %
cellular organisms	root	All Organisms → cellular organisms	5.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.06 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	4.95 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.06 %
Viridiplantae	kingdom	All Organisms → cellular organisms → Eukaryota → Viridiplantae	4.95 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.06 %
Streptophyta	phylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	4.95 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.06 %
Streptophytina	subphylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina	2.97 %
Moraxellales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.06 %
Embryophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	2.97 %
Moraxellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.06 %
Tracheophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta	2.97 %
Acinetobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.06 %
Euphyllophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta	2.97 %
Acinetobacter johnsonii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter johnsonii	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.06 %
Spermatophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta	2.97 %
Acinetobacter johnsonii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter johnsonii	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.06 %
Acrogymnospermae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae	2.97 %
Acinetobacter johnsonii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter johnsonii	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.06 %
Pinopsida	class	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida	2.97 %
Acinetobacter johnsonii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter johnsonii	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.06 %
Pinidae	subclass	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae	2.97 %
Acinetobacter johnsonii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter johnsonii	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.06 %
Conifers I	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I	1.98 %
Acinetobacter johnsonii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter johnsonii	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.06 %
Pinales	order	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales	1.98 %
Acinetobacter johnsonii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter johnsonii	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.06 %
Pinaceae	family	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae	1.98 %
Acinetobacter johnsonii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter johnsonii	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.06 %
Picea	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea	1.98 %
Acinetobacter johnsonii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter johnsonii	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.06 %
Picea sitchensis	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis	0.99 %
Picea glauca	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea glauca	0.99 %
Acinetobacter johnsonii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter johnsonii	0.99 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300022729\|Ga0228599_105858	Not Available	660	Open in IMG/M
3300022730\|Ga0224570_106539	Not Available	712	Open in IMG/M
3300022734\|Ga0224571_117919	Not Available	517	Open in IMG/M
3300023012\|Ga0228597_106275	Not Available	663	Open in IMG/M
3300023017\|Ga0224574_100452	Not Available	1878	Open in IMG/M
3300023017\|Ga0224574_104826	Not Available	736	Open in IMG/M
3300023224\|Ga0224575_100524	Not Available	1830	Open in IMG/M
3300023224\|Ga0224575_105667	Not Available	683	Open in IMG/M
3300023561\|Ga0247518_116518	Not Available	644	Open in IMG/M
3300028019\|Ga0224573_1000392	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	5584	Open in IMG/M
3300028019\|Ga0224573_1006764	Not Available	849	Open in IMG/M
3300031708\|Ga0310686_100224396	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	10708	Open in IMG/M
3300031708\|Ga0310686_100353295	Not Available	829	Open in IMG/M
3300031708\|Ga0310686_101263452	Not Available	544	Open in IMG/M
3300031708\|Ga0310686_101326295	Not Available	640	Open in IMG/M
3300031708\|Ga0310686_101763822	Not Available	659	Open in IMG/M
3300031708\|Ga0310686_101951615	Not Available	1566	Open in IMG/M
3300031708\|Ga0310686_102003116	Not Available	532	Open in IMG/M
3300031708\|Ga0310686_102108801	Not Available	764	Open in IMG/M
3300031708\|Ga0310686_102366982	Not Available	820	Open in IMG/M
3300031708\|Ga0310686_102373047	Not Available	520	Open in IMG/M
3300031708\|Ga0310686_102426241	Not Available	782	Open in IMG/M
3300031708\|Ga0310686_102757402	Not Available	576	Open in IMG/M
3300031708\|Ga0310686_102799608	Not Available	914	Open in IMG/M
3300031708\|Ga0310686_103105571	Not Available	768	Open in IMG/M
3300031708\|Ga0310686_103210247	Not Available	825	Open in IMG/M
3300031708\|Ga0310686_103872490	Not Available	1182	Open in IMG/M
3300031708\|Ga0310686_104023509	Not Available	634	Open in IMG/M
3300031708\|Ga0310686_104533413	Not Available	548	Open in IMG/M
3300031708\|Ga0310686_104880265	Not Available	509	Open in IMG/M
3300031708\|Ga0310686_104889581	Not Available	818	Open in IMG/M
3300031708\|Ga0310686_105438659	Not Available	648	Open in IMG/M
3300031708\|Ga0310686_105816566	Not Available	591	Open in IMG/M
3300031708\|Ga0310686_105923279	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea glauca	803	Open in IMG/M
3300031708\|Ga0310686_106245110	Not Available	793	Open in IMG/M
3300031708\|Ga0310686_106530657	Not Available	554	Open in IMG/M
3300031708\|Ga0310686_106560345	Not Available	608	Open in IMG/M
3300031708\|Ga0310686_106587479	Not Available	1850	Open in IMG/M
3300031708\|Ga0310686_106629913	Not Available	598	Open in IMG/M
3300031708\|Ga0310686_106672393	Not Available	539	Open in IMG/M
3300031708\|Ga0310686_106699342	Not Available	535	Open in IMG/M
3300031708\|Ga0310686_107076616	Not Available	688	Open in IMG/M
3300031708\|Ga0310686_107246290	Not Available	695	Open in IMG/M
3300031708\|Ga0310686_108046512	Not Available	646	Open in IMG/M
3300031708\|Ga0310686_108346308	Not Available	517	Open in IMG/M
3300031708\|Ga0310686_108452698	Not Available	1255	Open in IMG/M
3300031708\|Ga0310686_108543347	Not Available	692	Open in IMG/M
3300031708\|Ga0310686_108695318	Not Available	535	Open in IMG/M
3300031708\|Ga0310686_109864330	Not Available	546	Open in IMG/M
3300031708\|Ga0310686_110356884	Not Available	857	Open in IMG/M
3300031708\|Ga0310686_110392776	Not Available	610	Open in IMG/M
3300031708\|Ga0310686_110744915	Not Available	648	Open in IMG/M
3300031708\|Ga0310686_111183689	Not Available	648	Open in IMG/M
3300031708\|Ga0310686_111209176	Not Available	521	Open in IMG/M
3300031708\|Ga0310686_111219587	Not Available	1498	Open in IMG/M
3300031708\|Ga0310686_111341126	Not Available	587	Open in IMG/M
3300031708\|Ga0310686_111421908	Not Available	809	Open in IMG/M
3300031708\|Ga0310686_111589477	Not Available	807	Open in IMG/M
3300031708\|Ga0310686_111888362	Not Available	525	Open in IMG/M
3300031708\|Ga0310686_112204523	Not Available	500	Open in IMG/M
3300031708\|Ga0310686_112501375	Not Available	530	Open in IMG/M
3300031708\|Ga0310686_113383774	Not Available	660	Open in IMG/M
3300031708\|Ga0310686_113431230	Not Available	525	Open in IMG/M
3300031708\|Ga0310686_113698338	Not Available	657	Open in IMG/M
3300031708\|Ga0310686_113804484	Not Available	722	Open in IMG/M
3300031708\|Ga0310686_114200479	Not Available	753	Open in IMG/M
3300031708\|Ga0310686_114249269	Not Available	845	Open in IMG/M
3300031708\|Ga0310686_114423576	Not Available	662	Open in IMG/M
3300031708\|Ga0310686_114490449	Not Available	541	Open in IMG/M
3300031708\|Ga0310686_114527316	Not Available	721	Open in IMG/M
3300031708\|Ga0310686_114660137	Not Available	557	Open in IMG/M
3300031708\|Ga0310686_115046299	Not Available	1009	Open in IMG/M
3300031708\|Ga0310686_115247413	Not Available	667	Open in IMG/M
3300031708\|Ga0310686_115328496	Not Available	509	Open in IMG/M
3300031708\|Ga0310686_115498477	Not Available	5926	Open in IMG/M
3300031708\|Ga0310686_115640320	Not Available	667	Open in IMG/M
3300031708\|Ga0310686_115694950	Not Available	1519	Open in IMG/M
3300031708\|Ga0310686_115977357	Not Available	848	Open in IMG/M
3300031708\|Ga0310686_116271947	Not Available	3258	Open in IMG/M
3300031708\|Ga0310686_116316550	Not Available	1043	Open in IMG/M
3300031708\|Ga0310686_116705770	Not Available	650	Open in IMG/M
3300031708\|Ga0310686_116884782	Not Available	699	Open in IMG/M
3300031708\|Ga0310686_117245360	Not Available	672	Open in IMG/M
3300031708\|Ga0310686_117743180	Not Available	663	Open in IMG/M
3300031708\|Ga0310686_117781030	Not Available	804	Open in IMG/M
3300031708\|Ga0310686_117893433	Not Available	656	Open in IMG/M
3300031708\|Ga0310686_118160742	Not Available	1209	Open in IMG/M
3300031708\|Ga0310686_118207630	Not Available	724	Open in IMG/M
3300031708\|Ga0310686_118216962	Not Available	591	Open in IMG/M
3300031708\|Ga0310686_118774101	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter johnsonii	769	Open in IMG/M
3300031708\|Ga0310686_118966989	Not Available	575	Open in IMG/M
3300031708\|Ga0310686_119170525	Not Available	605	Open in IMG/M
3300031708\|Ga0310686_119587763	Not Available	760	Open in IMG/M
3300031708\|Ga0310686_119836834	Not Available	506	Open in IMG/M
3300031828\|Ga0316043_111132	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae	1205	Open in IMG/M
3300032515\|Ga0348332_14289479	Not Available	1826	Open in IMG/M
3300032756\|Ga0315742_12164606	Not Available	625	Open in IMG/M
3300033544\|Ga0316215_1007754	Not Available	1049	Open in IMG/M
3300033545\|Ga0316214_1000266	Not Available	5005	Open in IMG/M
3300033545\|Ga0316214_1018327	Not Available	974	Open in IMG/M
3300033546\|Ga0316213_1000499	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis	4118	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	87.13%
Host-Associated	Host-Associated	12.87%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	87.13%
Plants	Host-Associated → Plants	12.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	85.15%
Roots	Host-Associated → Plants → Roots	10.89%
Plant Litter	Environmental → Terrestrial → Plant Litter	1.98%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	85.15%
Unclassified	Host-Associated → Plants → Roots → Unclassified	10.89%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	1.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	84.16%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	10.89%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	1.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.98%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	84.16%
Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Roots	10.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.98%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.99%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.99%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300022729	Spruce roots microbial communities from Bohemian Forest, Czech Republic - CRU2	Host-Associated	Open in IMG/M
3300022730	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU2	Host-Associated	Open in IMG/M
3300022734	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU3	Host-Associated	Open in IMG/M
3300023012	Spruce litter microbial communities from Bohemian Forest, Czech Republic - CLU4	Environmental	Open in IMG/M
3300023017	Spruce roots microbial communities from Bohemian Forest, Czech Republic ? CRU3	Host-Associated	Open in IMG/M
3300023224	Spruce roots microbial communities from Bohemian Forest, Czech Republic ? CRU4	Host-Associated	Open in IMG/M
3300023561	Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRU2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300028019	Spruce roots microbial communities from Bohemian Forest, Czech Republic ? CRU1	Host-Associated	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031828	Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRU3 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300032756	Forest Soil Metatranscriptomics Site 2 Humus Litter Mineral Combined Assembly	Environmental	Open in IMG/M
3300033544	Spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE5	Host-Associated	Open in IMG/M
3300033545	Spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE4	Host-Associated	Open in IMG/M
3300033546	Spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE2	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0228599_1058581	3300022729	Roots	VTECFVKALRDVKVTGSEPEGTKNLAMLRVGVARAECNPQVILTA
Ga0224570_1065391	3300022730	Rhizosphere	EWVVKPLRVVKVVGSKRAGTKNTNMLRVDVAQVRCDPRVILTA
Ga0224571_1179191	3300022734	Rhizosphere	MEWVVKPLRVVKVVGSKRAGTKNTNMLRVDVAQVRCDPRVILTA
Ga0228597_1062751	3300023012	Plant Litter	LRVVKVTGSKPAGTKNQAMLRVSVAQARCDPRVILTA
Ga0224574_1004521	3300023017	Roots	MECVVKTLRDVKVTGSKPAGTKNPTMLRVGVAQAGCD
Ga0224574_1048262	3300023017	Roots	VREFVVKALCDVKVTGSKPVRKKILAILRVGVAQARCDPLVNLIA
Ga0224575_1005241	3300023224	Roots	MECVVKTLRDVKVTGSKPAGTKNPTMLRVGVAQAGCDPRVI
Ga0224575_1056671	3300023224	Roots	VREFVVKALCDVKVTGSKPARTKILAILRVGVAQARCDPLVNLIA
Ga0247518_1165181	3300023561	Soil	MECVVKPLRDVKVTGSKPAGTKNPTMLRVGVAQAGCDP
Ga0224573_10003921	3300028019	Roots	MECVVKTLRDVKVTGSKPAGTKNPTMLRVGVAQAGCDPRV
Ga0224573_10067641	3300028019	Roots	VREFVVKALFDVKVTGSKPAGTKILAILRVGVAQARCDPLVNLIA
Ga0310686_1002243963	3300031708	Soil	MECVVKTLRDVKVTGSKPAGTKNPTMLRVGVAQAGCDPRVILTA
Ga0310686_1003532951	3300031708	Soil	VTECVVKELHDVKVTGSKPTGTKNPAMLRVGVAQVGCDPRVILTA
Ga0310686_1012634521	3300031708	Soil	MECVVKTLRDVKVTGSKPTQTKNSSMLGVGVAQARCDSWVILTA
Ga0310686_1013262951	3300031708	Soil	RECVVKGVCDVKVTGSKPTGTKNLAILSVGVAQAMCDPLVNLMA
Ga0310686_1017638222	3300031708	Soil	RDVKVTGSKPAGTKNPTMLRVGVAQAGCDPRVILTT
Ga0310686_1019516151	3300031708	Soil	AFCDVKVISLKLAGTKNPAMLKIGMAQTGCDPWMILIA
Ga0310686_1020031161	3300031708	Soil	VGQLVTECVVKVLPDVKVIGSKHVGTKNPAMVRIGVAQAECDPQVILTA
Ga0310686_1021088011	3300031708	Soil	VTECVVKPLHDVKVTSLKPAGTKNPTLLRVGVAQAGYESRF
Ga0310686_1023669822	3300031708	Soil	MMECVVKVFRDVKVIGSKSAGTKNLAMLRVGVAQARCDPRVSLTA
Ga0310686_1023730471	3300031708	Soil	MKCVVKALRDVKVTGSKPAGTKNPAMLRVGVAHSGCDPHVVLTD
Ga0310686_1024262412	3300031708	Soil	MECVVKSLCDVKVIGSKPAGTKNPTMLRVGVAQAGCDPQVILTA
Ga0310686_1027574021	3300031708	Soil	VTECVVKPLRDVKVTGSKPAGTKNPTMLRVGVAQAGCDPRV
Ga0310686_1027996082	3300031708	Soil	MMECVVKALRDVKVTDSKPVETKNPAMLRVGVAQAGCDPRV
Ga0310686_1031055711	3300031708	Soil	MECVVKPLRDVKVTDSKPAGTKNPTMLRVGVAQAGCDPRVILTA
Ga0310686_1032102471	3300031708	Soil	MECVINALGDVKFTGSKPAGIKNPAMLRVGVAQAV
Ga0310686_1038724901	3300031708	Soil	GAGQSVMECTVKALCDVKVTGSEPTGTKNPAMLRVGVAQAEYDPWVVLIA
Ga0310686_1040235091	3300031708	Soil	VKECVVKALRDVKVIGLKPAVTKNPAILRVSVAQVGCDPQVIL
Ga0310686_1045334131	3300031708	Soil	MECVVKPLRDVKVTASKPAGTKNPTMLRVGVAQGGCDPRVILTATN
Ga0310686_1048802651	3300031708	Soil	VTECVVKPLRDVKVTGSKLAGTKNPTMLRVGVAQAGCDPRVILTA
Ga0310686_1048895812	3300031708	Soil	MECAVKELRDVKVISLKPAGKKKPAMLRVGVAQAGCDP
Ga0310686_1054386591	3300031708	Soil	GVEQSVMECGVKALHDVKFTDSKPAGTKNPSMLRVGVAQAGYDPQVILMA
Ga0310686_1058165661	3300031708	Soil	LRDVKVTGSKPVGTKNPTMLRVGVAQVGCNPRVILTA
Ga0310686_1059232792	3300031708	Soil	QSVMECVVKPLRDVKVTGSKPAGTKNPTMLRVGVAQAGCDPRVILMA
Ga0310686_1062451101	3300031708	Soil	MECVVKALCDVKATGSKLVVTKNLAMLRVGVAQAGCDPRVILTT
Ga0310686_1065306571	3300031708	Soil	VRECVVKALRDVKVTGSKPAGTKNPAMLRVGVAQAGCDPRVILMA
Ga0310686_1065603451	3300031708	Soil	CDVKVTGSKPAGTKNPTMLRVGVAQAGCDPRVILTA
Ga0310686_1065874792	3300031708	Soil	MGCALKALCDVKATGSKPMGTKNPTMLRVGVDQVGCDPWVVLTA
Ga0310686_1066299131	3300031708	Soil	MECAVKTLRDVKVTGSKLAGTKNPAMLRVGVAQDGCDPRVILTT
Ga0310686_1066723931	3300031708	Soil	VTECVVKALRDVKVIGLKPVGTKNSTILRVGVAQAGYDPQVILTA
Ga0310686_1066993421	3300031708	Soil	RGVGQLVTECVVKALHDVKVTNLKLAGTKTPSMLRFGVAQVECDRQVILTA
Ga0310686_1070766161	3300031708	Soil	VTECAVKPLRDVKVTGSKPAGTKNPTMLRVGVAQAG
Ga0310686_1072462901	3300031708	Soil	MECVVKALCDVKVISSKLAGTKNPAMIRVGVAQARCDPLVNLIA
Ga0310686_1080465121	3300031708	Soil	VVKALCDVKVTGSKPVGTKNPAMLRVGVAQARCNPRVILIA
Ga0310686_1083463081	3300031708	Soil	MECAVKALRDVKVTGSKPTGTKNPTMLRVDVAQAGCDPQVILTA
Ga0310686_1084526981	3300031708	Soil	GVGQSVTECVVKPLRDVKVTGSKPAGTKNPTMLRVGVAQAECDPQVSQATG
Ga0310686_1085433472	3300031708	Soil	MECVVKALHDVKVIGLNPAGTKNPAMLRVGVAQARCNPRVILMA
Ga0310686_1086953181	3300031708	Soil	VTECVAKPLRDVKVTGSKHAGTKNPTMLRVGVAQAGCDPRVILTA
Ga0310686_1098643301	3300031708	Soil	VTECVVKPLCDVKVTGSKPAGTKNPTMLRVGVAQAGCDP
Ga0310686_1103568841	3300031708	Soil	MECVVKALCDVKVTGSKPAGTKNPAILRVGVAQAMCDPRVILTA
Ga0310686_1103927761	3300031708	Soil	MTECVVKPLHVVKVTGWKATGTKNPTMLRIDVAQAGCDPRVILTT
Ga0310686_1107449151	3300031708	Soil	MECVVKALRDVKVTGSKPAGTKNLAMLRVGVAQVGCDPRVILMA
Ga0310686_1111836891	3300031708	Soil	VIDCVVKALCDVKFIGLKPAGTKNPAMLRVGVAQA
Ga0310686_1112091761	3300031708	Soil	MECAIKVLHDVKVTSSKAAGTKNLAILRVGVAQARCDPRVILTA
Ga0310686_1112195871	3300031708	Soil	VTECVVKPLRDVKVTGLKPAGTKNPTMLRVGVAQAGCNPRVILTA
Ga0310686_1113411261	3300031708	Soil	VAECAVKAFSDVKVTGSKPVGTKNPAMLRVGVVQAGSDPRVILTV
Ga0310686_1114219081	3300031708	Soil	VTECVVKPLRDVKVTGSKSAGTKNPTMLRVGVAQVRCDPG
Ga0310686_1115894771	3300031708	Soil	MECVVKPLCVVKVTGSNPVGTKNPTMLRVGVAQAAQCDPRVILTA
Ga0310686_1118883621	3300031708	Soil	MECVVKPLRDVKVTGSKPVGTKNPTMLRVGVAQAGCDPR
Ga0310686_1122045231	3300031708	Soil	VIECLVKPLRVVEVTGSKLEGTKNPTMLRVGVAHAECDPRVILIT
Ga0310686_1125013752	3300031708	Soil	VRECVVKALCDVKVTDSKPVGTKNLSILRVGVAQARCNPLASKKK
Ga0310686_1133837741	3300031708	Soil	MECVVKALCDVKVTGSKPAGIKNPAMLRVGVAQDGCEPRVILM
Ga0310686_1134312302	3300031708	Soil	MECAIKALCDVKVTGLKSAGTKNPTMLRVGVAQAKCDPWVILMA
Ga0310686_1136983381	3300031708	Soil	VTECVVKPLRVAKVIGSKPTGTKNPTMLRVGVAQAGCNPQVILTP
Ga0310686_1138044842	3300031708	Soil	EXVIKALCDVKVTDLKPAGTKNLAMLRVVVAQVECSPSMILKA
Ga0310686_1142004791	3300031708	Soil	MECVVKVLRDVKFISSKPTGTKNPAMLRVGVAQVGCNP
Ga0310686_1142492691	3300031708	Soil	MECVVKTLCDVKVIVLKFVGTKNPSILRVGVAQVGCDPRVILAA
Ga0310686_1144235761	3300031708	Soil	DVKVTGSKPAGTKNPTMLRVGVAQARCDPRVILTA
Ga0310686_1144904491	3300031708	Soil	GVGQSVMECVVKPLRDVKVTGSKPAGTKNPTMLRVGVAQAGCNPRVILTA
Ga0310686_1145273161	3300031708	Soil	LVTKCVVKALSDVKVIVSKPMGTKNGAMSRVGVDQARCDPWVIFLAYIP
Ga0310686_1146601371	3300031708	Soil	VVKPLRVVKVTGSKPVGTKNPTMLRVGVAQARCDPRMILTT
Ga0310686_1150462992	3300031708	Soil	VTECVVKPLCDVKVTGLKLAGAKNPTMLRVGVAQAGCDPRVILTA
Ga0310686_1152474132	3300031708	Soil	VTECAVKVLRDVKVIGSKPVGTKNLSMLRVGVAQAKCDP
Ga0310686_1153284961	3300031708	Soil	ECVVKPLRDVKVTGSKPAGTKNPTMLRVGVAQAGCDPRVILTA
Ga0310686_1154984771	3300031708	Soil	MKKCTIKELRDVKVTGSKPAGTKNLAMLRVAVAQTGCDPQVILMD
Ga0310686_1156403202	3300031708	Soil	VKPLRDVKVTGSKPAGTKNPTMLRVGVAQAGCDPRVILTA
Ga0310686_1156949501	3300031708	Soil	VTECVVKALSDVKVTGLKLVGTKDPAMLRVGVAQAGCDPRVILTA
Ga0310686_1159773572	3300031708	Soil	VTECVVKALQDVKVTGSKPARAKNPAMLRVCVAQVGCDPRVILMA
Ga0310686_1162719471	3300031708	Soil	MTECAVKVLRDVKVTVSKPTGTKNPSMLRVGVAQAGCDPHKLTNKKE
Ga0310686_1163165501	3300031708	Soil	VTECVVKPLRVVKVTGSKPAGTKTPTMLRVGVAQAG
Ga0310686_1167057702	3300031708	Soil	VREFVVKALYDVKVIGSKPAGTKILAILRVGVAQARCDPFMNLIA
Ga0310686_1168847822	3300031708	Soil	VKECVVKALPDVKVIGSKPTGIKNPAMLKVSVAQASKPSKSKI
Ga0310686_1172453602	3300031708	Soil	VGQSVTECVVKPLRDVKVTGSKPAGTKNPTMLRVGVAQAGCDSG
Ga0310686_1177431802	3300031708	Soil	MECVVKPLCVVKVTSSKPAGTKNTTMLRVGVAQVGCDPRVILTA
Ga0310686_1177810302	3300031708	Soil	VTECVVKPLHVVKVTGSKPVGTKNPTMLRVGVAQVRCD
Ga0310686_1178934331	3300031708	Soil	ECVVKPLRVVKVTGSKPAGTKNPIILRVGVAQAECDTQVT
Ga0310686_1181607423	3300031708	Soil	VTECVVKPLRDVKVTGSKPVGTKNPTMLRVGVAQAGCD
Ga0310686_1182076301	3300031708	Soil	VTECVVKPLCDVKVTGLKPVGTKNPTMLRVGVAQAGCDPRVILTA
Ga0310686_1182169621	3300031708	Soil	VTECVVKALCDVKVTGLKPAGIKNPSMLRVGVAQVGCDPR
Ga0310686_1187741011	3300031708	Soil	MECVVKPLRDVKVTGSKATGTKNPTMLRVGVAQARCDPQVILMA
Ga0310686_1189669891	3300031708	Soil	MECVVKPLSDVKVTGSKPAGTKNPTMLRVGVAQAGCDPRVILTA
Ga0310686_1191705251	3300031708	Soil	VTECAVKVLRDVKVTGLKPAGTKNPAMLRVGVAQAGCD
Ga0310686_1195877631	3300031708	Soil	ECPVKALHDVKVTGLKPPGTKNPTMLRVSVDQVRCDP
Ga0310686_1198368341	3300031708	Soil	VRECVVKPLRDVKVTSSKPAGTKNPTMLRVGVAQAG
Ga0316043_1111322	3300031828	Soil	MECVVKPLRDVKVTGSKTAGTKNPTMLRVGVAQTGCDPLVILTA
Ga0348332_142894792	3300032515	Plant Litter	VTEYAVKALRDVKVIVSKPVGTKNPVMLRVGVDQTRCDPRMILMV
Ga0315742_121646061	3300032756	Forest Soil	VTEYAVKALRDVKVIVSKLVGTKNPVMLRVGVDQASCDPRMILMV
Ga0316215_10077541	3300033544	Roots	VREFVVKALCDVKVTGSKPAGTKILAILRVGVDQARCDALVNLI
Ga0316214_10002661	3300033545	Roots	VTECVVKPLRDVKVTGSKPAGTKNPTMLRVGVAQAGCDPRVILTA
Ga0316214_10183271	3300033545	Roots	VREFVVKALCDVKVTGSKPAGTKILAILRVGVAEARCDPLVNLIA
Ga0316213_10004991	3300033546	Roots	VTECVVKALRDVKVTGSKPAGTKHPAVLKVGVAQAGCDPQVILTT

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F102190

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences