NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300028019

3300028019: Spruce roots microbial communities from Bohemian Forest, Czech Republic ? CRU1



Overview

Basic Information
IMG/M Taxon OID3300028019 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0128948 | Gp0256501 | Ga0224573
Sample NameSpruce roots microbial communities from Bohemian Forest, Czech Republic ? CRU1
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size74911221
Sequencing Scaffolds45
Novel Protein Genes52
Associated Families37

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta1
Not Available22
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Triticinae → Aegilops → Aegilops tauschii → Aegilops tauschii subsp. strangulata2
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → cellular organisms → Bacteria5
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → Acidobacteria4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea glauca1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa → Acidicapsa acidisoli1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fagales → Fagaceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests
TypeHost-Associated
TaxonomyHost-Associated → Plants → Roots → Unclassified → Unclassified → Roots → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.043Long. (o)13.6183Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001423Metagenome / Metatranscriptome698Y
F001946Metagenome / Metatranscriptome613Y
F002427Metagenome / Metatranscriptome560Y
F002561Metagenome / Metatranscriptome548Y
F004074Metagenome / Metatranscriptome454Y
F004223Metagenome / Metatranscriptome448Y
F008764Metagenome / Metatranscriptome328Y
F008793Metagenome / Metatranscriptome328Y
F009817Metagenome / Metatranscriptome312Y
F011735Metagenome / Metatranscriptome287Y
F012731Metagenome / Metatranscriptome278Y
F013931Metagenome / Metatranscriptome267Y
F013972Metagenome / Metatranscriptome266Y
F014304Metagenome / Metatranscriptome264Y
F016223Metagenome / Metatranscriptome249Y
F019823Metagenome / Metatranscriptome227Y
F021346Metagenome / Metatranscriptome219Y
F023648Metagenome / Metatranscriptome209Y
F037234Metagenome / Metatranscriptome168Y
F043636Metagenome / Metatranscriptome156Y
F047349Metagenome / Metatranscriptome150Y
F050503Metagenome / Metatranscriptome145Y
F050832Metagenome / Metatranscriptome144Y
F061993Metagenome / Metatranscriptome131Y
F066361Metagenome / Metatranscriptome126Y
F067936Metagenome / Metatranscriptome125Y
F078199Metagenome / Metatranscriptome116Y
F078337Metagenome116Y
F080569Metagenome / Metatranscriptome115Y
F081918Metagenome / Metatranscriptome114Y
F089693Metagenome108Y
F092175Metagenome / Metatranscriptome107Y
F098130Metagenome / Metatranscriptome104Y
F102190Metagenome / Metatranscriptome101Y
F102524Metagenome / Metatranscriptome101Y
F104140Metagenome / Metatranscriptome100Y
F104259Metagenome / Metatranscriptome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0224573_1000392All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta5584Open in IMG/M
Ga0224573_1000917Not Available2723Open in IMG/M
Ga0224573_1000928All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Triticinae → Aegilops → Aegilops tauschii → Aegilops tauschii subsp. strangulata2696Open in IMG/M
Ga0224573_1001335All Organisms → cellular organisms → Bacteria → Proteobacteria2062Open in IMG/M
Ga0224573_1002391All Organisms → cellular organisms → Bacteria1420Open in IMG/M
Ga0224573_1002548Not Available1376Open in IMG/M
Ga0224573_1003187All Organisms → cellular organisms → Bacteria1211Open in IMG/M
Ga0224573_1003216Not Available1204Open in IMG/M
Ga0224573_1003380All Organisms → cellular organisms → Bacteria1175Open in IMG/M
Ga0224573_1003584All Organisms → Viruses → Predicted Viral1146Open in IMG/M
Ga0224573_1003674All Organisms → cellular organisms → Bacteria → Acidobacteria1133Open in IMG/M
Ga0224573_1003954Not Available1091Open in IMG/M
Ga0224573_1004017Not Available1081Open in IMG/M
Ga0224573_1004559All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1017Open in IMG/M
Ga0224573_1004574Not Available1015Open in IMG/M
Ga0224573_1005129Not Available961Open in IMG/M
Ga0224573_1005788All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria912Open in IMG/M
Ga0224573_1005799Not Available912Open in IMG/M
Ga0224573_1006130Not Available890Open in IMG/M
Ga0224573_1006405All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium872Open in IMG/M
Ga0224573_1006743All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea glauca851Open in IMG/M
Ga0224573_1006764Not Available849Open in IMG/M
Ga0224573_1007244All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa → Acidicapsa acidisoli821Open in IMG/M
Ga0224573_1008352All Organisms → cellular organisms → Bacteria773Open in IMG/M
Ga0224573_1008761All Organisms → cellular organisms → Bacteria → Acidobacteria758Open in IMG/M
Ga0224573_1008991Not Available750Open in IMG/M
Ga0224573_1009088All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Triticinae → Aegilops → Aegilops tauschii → Aegilops tauschii subsp. strangulata746Open in IMG/M
Ga0224573_1009309Not Available738Open in IMG/M
Ga0224573_1010297Not Available707Open in IMG/M
Ga0224573_1010624All Organisms → cellular organisms → Bacteria697Open in IMG/M
Ga0224573_1012109All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fagales → Fagaceae659Open in IMG/M
Ga0224573_1014075Not Available618Open in IMG/M
Ga0224573_1016381All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium579Open in IMG/M
Ga0224573_1017079All Organisms → cellular organisms → Bacteria → Acidobacteria569Open in IMG/M
Ga0224573_1017159Not Available568Open in IMG/M
Ga0224573_1017643Not Available562Open in IMG/M
Ga0224573_1018525Not Available550Open in IMG/M
Ga0224573_1019180All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia542Open in IMG/M
Ga0224573_1020903All Organisms → cellular organisms → Bacteria → Acidobacteria523Open in IMG/M
Ga0224573_1021381Not Available518Open in IMG/M
Ga0224573_1021422Not Available518Open in IMG/M
Ga0224573_1021951All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii512Open in IMG/M
Ga0224573_1022810Not Available504Open in IMG/M
Ga0224573_1023059Not Available502Open in IMG/M
Ga0224573_1023289Not Available500Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0224573_1000392Ga0224573_10003921F102190MECVVKTLRDVKVTGSKPAGTKNPTMLRVGVAQAGCDPRV
Ga0224573_1000917Ga0224573_10009171F050832MVMEAVAADRTSLAKKKKKDGPSRAMLRSILLSALHV
Ga0224573_1000928Ga0224573_10009283F098130MEHRNVRDWAPPGWHWEVLPSGARSLVRNPGPVVDPELVWWPARGPRPVQREPAPLEVVRRRIREEDEHVRRYLVALEVMTYRSWQYLPGPSAIFDPQPVPYLWVFTTRGPGPRPHH
Ga0224573_1001335Ga0224573_10013353F092175MTTIEALTEREQQALQLMREAQEQGSTLKAYAEKVGQDVGQLYDLRRRLVRKGAFGPLPDRKPRKPRKANAFVSVRVLPATPVPNTTEIACRLSHPSGWVLECDGLPPASWIAAVLTGGAHVAP
Ga0224573_1002391Ga0224573_10023911F004223VSLDAGDSPVTNATLSSVNAAFTLALILTQATSPRQAIRLLTTAVPSIASCDQVLTWHPSRSGDYYERAPDRISGTLTGITVPGQFELDGSSSWWAFPLAPSLVNNPVFLVVATTDPLSAQEKFLLSVLVQLCGTVIAKLELLAAET
Ga0224573_1002548Ga0224573_10025481F013972MTVPNARQPNIAIGLQDQTSIALNLFNTILRTAKNRTELEQSWAAIEQDITIQEQREERQRQLRN
Ga0224573_1003187Ga0224573_10031871F013931MNDTFIPAAANARSRNDLVERGFTRQPLRVDADVARSIEELSHAVW
Ga0224573_1003216Ga0224573_10032161F013972MTVPIARQPNIEPDLSDQINIALNLFDTILKTAITRVELERSWAAIEWDISIQEHLEARQRQLRNQP
Ga0224573_1003380Ga0224573_10033802F004074MTAQLTHQSIQARAAVPAVPAGRGRLREACHRVRLVVAEMNYASRRVVERQAPWTVDQQWHSR
Ga0224573_1003584Ga0224573_10035842F037234MNKYLKLDPKPGDLTTVRVIKARTGYRCKDIRRTVVS
Ga0224573_1003674Ga0224573_10036743F047349VPASSDEAFQQLLLRIAAKAAQRPDLPSLIQLFCSATREFFQVSGVYFWRRYAGDELVAEQADGKMADRFVGIRLLPQQSTVTA
Ga0224573_1003954Ga0224573_10039541F013972MTVPTPTQPNVEPGLLNQTHITLNLFNTILKTTTNRAKLEQSWAAIERDITIQE
Ga0224573_1004017Ga0224573_10040171F011735MWLRPFIMKEVLKKVSYHLVDFEGNALEEPRNGLYLKKHYS
Ga0224573_1004559Ga0224573_10045592F043636MPSYSPQDVQDELLNVIRTSQETVVEAVKTWVETVKAVTPKVPAIPLAEKLPKPQDVVTSAYDFAEKLLSGQRQFAEELVKATAPLRAGGDAPEEPSADAK
Ga0224573_1004574Ga0224573_10045741F013972MTVPNVRQPNVDPGLQDQTSIALNLFNTILQTARNRTELEQSWTAIERDITIQEQREERQRQLRN
Ga0224573_1005129Ga0224573_10051292F078337MRHVIGVILAVIMAGVFFFAGAWGYLRLLRLPAAALPAGGGSLLSDHHVIEAFAALLVTGLLA
Ga0224573_1005144Ga0224573_10051441F080569TGGYTVKPDAGGRVTVRRGAGGAIVSIKHVPGATVFRVRGGLPLLGGGTRRRVADTLRRSPEFRSL
Ga0224573_1005347Ga0224573_10053471F104140MTYSMKSKNKLEGDSNFRAWKTRIDLILAKNKVLDIMKG
Ga0224573_1005788Ga0224573_10057882F016223MFDSLNDQALRAAHDAARLLYDNHRALGLDVLAVKLDTLRVDLAVELENRGKPLAPADGQPAPAQDQPAP
Ga0224573_1005799Ga0224573_10057991F013972MTVPNGRQPNIEPGLQDQTSIALNLFNTILQTTTNRTELERSWATIECDISIQEQREARQRQLRN
Ga0224573_1006130Ga0224573_10061302F002561MDETDAASIGRWRPSSVSPPGAAFARDVITLWAAGKLADYAASLGLDLVPGVVLHPSVTERFIRCAPGLSPVVRRTLRTNLRFTGRRVVPQF
Ga0224573_1006405Ga0224573_10064052F009817SSLAQQDTLAMVQPPDAMEPAPMMKFTEPATLPKPSSEHRFWDRQNSALFAANVAFSAADFVVTRDNLRNGGQELNPVTRVFSGSTAGLAMNFAGETAGVIGLGYFFHRTGHHRLERAVSMLNLGSSAAAVGFGLAHR
Ga0224573_1006743Ga0224573_10067431F066361KRMISRGNLQTQRMVTHQEMGEGSHNRDEDSDERRAIGTPPDLAETMRSLMVELQSCKADNERMMKEQEKQTEINAVLL
Ga0224573_1006764Ga0224573_10067641F102190VREFVVKALFDVKVTGSKPAGTKILAILRVGVAQARCDPLVNLIA
Ga0224573_1007244Ga0224573_10072441F012731DPAQLMSNPVVAVTLRVALGTYVVWMARKFYADPTGYFRKSARNLVDLTWLEPIIRGLACFCLWGGCFIVATAIAVQILHLHGYFLALALVTVAAIATWFLLPRQRRADTEDRSRI
Ga0224573_1007674Ga0224573_10076742F001423MKNVYEVLRQKEMELTRLEKEVEALRLVAPLLSEEKEISDI
Ga0224573_1008352Ga0224573_10083521F008793MLRNVSNSILFGAAGNLHMRECWLDCLVCPRRYRANL
Ga0224573_1008761Ga0224573_10087611F002427MSASAAPRATLDLRVRVWGMGANNQPFHQNATAQNVSLTGACINGLEQELKVGDVI
Ga0224573_1008991Ga0224573_10089911F066361MVTHQEVGEGSHNRDEESDERRAVGTPTDLAEIVRSLMVELQSCKADNERMMKEQEKQTEINAVLLQSLS
Ga0224573_1009088Ga0224573_10090881F098130MPDPHPRHRLGGDDQFERRHVRDWAPPGWHWEVPSSGTRSLVRNPGLVVDPELLWWRSSGPLSVQREPAPEEVVRHRVREEDEHVRRYMVALDVRFSNTWQFLQGSHPSYAPVMVPSLWVFTARGSGSASRRPV
Ga0224573_1009309Ga0224573_10093091F089693PTVIQPNIQLGILDQTNIALNLFSTTLRTANTREELERSWAAIEQDIATQEQLEARQRERRNLH
Ga0224573_1010297Ga0224573_10102971F013972MTVPNNRQPNIELGLQDQTSIALNLFNTILQTTTTRIELECSWVVIERDISIQEQWEARQRQL
Ga0224573_1010624Ga0224573_10106241F021346ALQHKGWISATKANCPSSVEPPCVDVTLTPAGVDTFQTLVTPGEAEKQFFSIPAARRELVAVTGISKQANVASVEFTWRWASLNEVGAAIYSGDTRYRSSAAFRSYDDGWRVVVGSVRAGQPLDDALKNSEPAP
Ga0224573_1011545Ga0224573_10115451F104140SMKSKNKLEGDSNFRAWKTRIDLILAKNKVLDIVKGKIMEPQFEEGKEKEP
Ga0224573_1011916Ga0224573_10119162F066361LGKNTHNREEKYDERRAVETTQDLVETVRSLMEKLQSCKDENQRIIKEKEKQIEINAILLQILLDIKKK
Ga0224573_1012109Ga0224573_10121091F078199LGYDFEIVYIKGKQNVVADALSRKEEDVEAFLCAISIIQPNWIIEA
Ga0224573_1014075Ga0224573_10140751F066361MVTHQEVGEGSHNRDEESDERRVVGTPTDLAETVKSLIVELQSCKADNERMMKEQEKQTEINAVLLQSLSDLQRQMQHEPEMQNHGRVSGHTER
Ga0224573_1014802Ga0224573_10148021F102524FNIQADTNFDPQTASYDVRTGVSEGNGGTSIASGTAPIQVSPTGRNFLGLNEYSVAVNLSAPLSLTPGEYWFNVTPACTNGTQDGSCSVGRIFFSNTTNRANGVNGEAQVAGQLYLNSSFFGFTYANWCDSALGFNKIQCAGGSYGLIGAAGGN
Ga0224573_1015976Ga0224573_10159761F104140MKSENKLDGASNFKAWKTRIDLILAKNKVLDIMKGKIVKPKF
Ga0224573_1016381Ga0224573_10163811F023648CFKVALNAGDNFERELGAGLLFRVRSQKEQGWFLDIVPAEANTKDYIYPVNLPLRFNGNQTLGPGYGETVKSSLAHSHEMKFLLNRADYDRVFGLIGNVLWSYRTSDPDKALSDYTNAVDEASKGTLRINVSSHKTDPKTGALTRIKLRAQITVPANFQFAPHLNPFPWPCHP
Ga0224573_1017079Ga0224573_10170791F050503MLRQLWLLVLIFSFPAAASVQPTTVRFSKAVLLQREPQLSKAPVRISEFSEVPHVSARSRCEDTQPPEALTTPNPLLVPAVAGAKIKVSFIIGADGRVHSP
Ga0224573_1017159Ga0224573_10171591F104259LGGRKGQGWRGQPSLDIGVLYLPLGGLSLPLYLEAVTTFGSHYFP
Ga0224573_1017643Ga0224573_10176431F089693MTVPTVIQPNIQLGISDQTNISLSLFSTTLRTANTREELERSWAAIEQDIATQEQLEARQ
Ga0224573_1018525Ga0224573_10185251F081918SCTENLTDLNNIPTPCPYLLIINIIIFNGVAERWVNLGLILFKNNY
Ga0224573_1019180Ga0224573_10191801F019823RAGRGARQAAADAGIAVLLGLYECREDTDPAMILVRAGLPGAVDETARMVYRKLKELHLSLPALTDECPEWSWYAESWE
Ga0224573_1020903Ga0224573_10209032F061993IEHSANKFLHELRDGHCDELLAQWEHDYRKKYAHFICDSETQHPLLSWELAEWESAPPLTILHYRGKRRYGNQPGTYQELFTVTTENKDGEWVVTKYDAMY
Ga0224573_1021381Ga0224573_10213811F013972MTVPSSRQPNVEPGLQDQTSIALNLFNTILQTSTNRVELERSWDAIERDISIQEQQEARQRQLRN
Ga0224573_1021422Ga0224573_10214221F013972MTVPNSRQPNLEPGLQDQISITLNLFNTILQTTTNRDELERSWAAIEHDISIQEQQEARQRQLRN
Ga0224573_1021951Ga0224573_10219511F014304VVLPHTGPVEPAAYSVGGPSRPFAGRRGRARRSRIAGPSDQALHWLAGWYAIALRLGGAVLFTAIAVLAATEQISGWWLGLPLTALCVWSAVFTWRVRRSGLTPVVVLTDVAVISALELAQRHMVPAVLI
Ga0224573_1022810Ga0224573_10228102F008764LQVHFRPESPQFSATVRLEALADPGLAAEFVSALREIAAGASTPR
Ga0224573_1023059Ga0224573_10230592F001946GDAAFDKPREWLAMPGGRIRPVVSVPGDGTDELLAYEAWLARLRPVCHCGQPRLGSGRTCGSAECVAALNAQVLPPESS
Ga0224573_1023289Ga0224573_10232891F067936ATLLRLGQLQRAADVAEETARLEPTSLYLLWAARENMAASRLNEARSWLAQAEALKSDFPELRILRLRLAFIERDRAAIDRIFDREAHGPNQVLFLREQAKFKTQQGQLESANRIQLQASRLSSDPEDISTAVAFSALRNAEAGKAIEARRFQDQALRSKLDRGQK

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