Sample 3300023017

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300023017

3300023017: Spruce roots microbial communities from Bohemian Forest, Czech Republic ? CRU3

Overview

Basic Information
IMG/M Taxon OID	3300023017 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128948 \| Gp0256502 \| Ga0224574
Sample Name	Spruce roots microbial communities from Bohemian Forest, Czech Republic ? CRU3
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	28554557
Sequencing Scaffolds	13
Novel Protein Genes	15
Associated Families	7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	12
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Alismatales → Araceae → Aroideae → Colocasieae → Colocasia → Colocasia esculenta	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests
Type	Host-Associated
Taxonomy	Host-Associated → Plants → Roots → Unclassified → Unclassified → Roots → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Czech Republic: South Bohemian Region
Coordinates	Lat. (^o)	49.0431	Long. (^o)	13.617	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011735	Metagenome / Metatranscriptome	287	Y
F013972	Metagenome / Metatranscriptome	266	Y
F050832	Metagenome / Metatranscriptome	144	Y
F066361	Metagenome / Metatranscriptome	126	Y
F089693	Metagenome	108	Y
F102190	Metagenome / Metatranscriptome	101	Y
F104140	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0224574_100452	Not Available	1878	Open in IMG/M
Ga0224574_101000	Not Available	1394	Open in IMG/M
Ga0224574_102164	Not Available	1027	Open in IMG/M
Ga0224574_102178	Not Available	1025	Open in IMG/M
Ga0224574_102722	Not Available	938	Open in IMG/M
Ga0224574_104013	Not Available	796	Open in IMG/M
Ga0224574_104826	Not Available	736	Open in IMG/M
Ga0224574_106643	Not Available	641	Open in IMG/M
Ga0224574_107585	Not Available	603	Open in IMG/M
Ga0224574_107974	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Alismatales → Araceae → Aroideae → Colocasieae → Colocasia → Colocasia esculenta	590	Open in IMG/M
Ga0224574_110286	Not Available	526	Open in IMG/M
Ga0224574_111349	Not Available	503	Open in IMG/M
Ga0224574_111490	Not Available	500	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0224574_100135	Ga0224574_1001352	F104140	MKSENKIDGASNFRAWKTRIDLILSKNKVPDIVRGKIVKPEFEEGEEKEPQ
Ga0224574_100452	Ga0224574_1004521	F102190	MECVVKTLRDVKVTGSKPAGTKNPTMLRVGVAQAGCD
Ga0224574_101000	Ga0224574_1010003	F013972	MTVPNARQPNIAIGLQDQTSIALNLFNTILRTARNRTELEQSWAAIEQDITIQEQREERQRQLRN
Ga0224574_102164	Ga0224574_1021641	F089693	MTVPTVTQPNIQPGLSNQIHVALNLFDTILRTANTREELERSWTTIEQDIIRQEQLEARQQERRNPH
Ga0224574_102178	Ga0224574_1021781	F011735	KLEPMWHGPYIVKRVLHRGAYELVDYDGISLGEPRNGLYLKKYYA
Ga0224574_102722	Ga0224574_1027222	F050832	MVMEAVAADRTSLAKKKKDGPSRAMLRSILLSALHV
Ga0224574_104013	Ga0224574_1040131	F011735	KLEPMWHDPYIMKRVLHKGAYELVDHDGISLGEPRNGLYLKKYYA
Ga0224574_104826	Ga0224574_1048262	F102190	VREFVVKALCDVKVTGSKPVRKKILAILRVGVAQARCDPLVNLIA
Ga0224574_106643	Ga0224574_1066431	F050832	MVMDAVAADKIKLMEEEKDGPSRAMLRSILLSILHV
Ga0224574_107065	Ga0224574_1070651	F104140	MTYSMKSENKLEGASNFRAQKTRIDLILAKNKVLDIVKGKIVEPRF
Ga0224574_107585	Ga0224574_1075851	F089693	MTVPAVTQLNIQPGLSNQTHIALNIFDTILKTANTQEELEHSWAAIEQDITTQEQLEARQRECRNPH
Ga0224574_107974	Ga0224574_1079742	F011735	EAMWRGPYIVRRVLEKGAYELVDYDGIPLSEPRNGLYLKKYYA
Ga0224574_110286	Ga0224574_1102862	F066361	MVTHHEVGEGSHNRDEESDERRAAGTPPDLAETVRSLMVELQSCKADNERMMKEQEKQTEINAVLLQSLSDLQRQMQHEPEN
Ga0224574_111349	Ga0224574_1113491	F013972	MTVHVVRQPNIEPNLTNQTHIALNLFDTILKTANTRVELERSWLQIEMDINIQEQLEVKQRQPRNEI
Ga0224574_111490	Ga0224574_1114903	F013972	PNVRQPNVDPGLQDQTSIALNLFNTILQTARNRTELEQSWAAIERDITIQEQREERQRRLRNRI

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