3300022729: Spruce roots microbial communities from Bohemian Forest, Czech Republic - CRU2

Overview

Basic Information

• IMG/M Taxon OID: 3300022729
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128948 | Gp0267120 | Ga0228599
• Sample Name: Spruce roots microbial communities from Bohemian Forest, Czech Republic - CRU2
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 26123628
• Sequencing Scaffolds: 12
• Novel Protein Genes: 12
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	12

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests
• Type: Host-Associated
• Taxonomy: Host-Associated → Plants → Roots → Unclassified → Unclassified → Roots → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Czech Republic: South Bohemian Region
• Coordinates
  • Lat. (^o): 49.044
  • Long. (^o): 13.617
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011735	Metagenome / Metatranscriptome	287	Y
F013972	Metagenome / Metatranscriptome	266	Y
F038985	Metagenome / Metatranscriptome	164	Y
F061214	Metagenome / Metatranscriptome	132	Y
F089693	Metagenome	108	Y
F102190	Metagenome / Metatranscriptome	101	Y
F102319	Metagenome / Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0228599_100005	Not Available	12930
Ga0228599_102319	Not Available	1018
Ga0228599_102936	Not Available	915
Ga0228599_103482	Not Available	849
Ga0228599_103946	Not Available	797
Ga0228599_104172	Not Available	777
Ga0228599_104764	Not Available	729
Ga0228599_104995	Not Available	713
Ga0228599_105858	Not Available	660
Ga0228599_106309	Not Available	637
Ga0228599_106584	Not Available	624
Ga0228599_108930	Not Available	535

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0228599_100005	Ga0228599_10000514	F038985	MPQKHRLGPQNGSGPEKMPKIVNCATIDETVKLKETMVGVQVE
Ga0228599_102319	Ga0228599_1023191	F089693	MTAPAVIQPNIRLGISDQTNIALSLFSTTLRTANTREELERSWAAIEQDIAIQEQLEARRREHRNLH
Ga0228599_102936	Ga0228599_1029361	F013972	MTVPNVRQPNVDPGLQDQTSIALNLFNTILQTARNRTELEQSWTAIERDITIQEQREERQRQLRNRI
Ga0228599_103482	Ga0228599_1034821	F089693	MTIPAATQPNIQPGLSNQTHIALNLFDTILKTANTQEVLERSWVAIEQDITTQEQLEARQRERRNPH
Ga0228599_103946	Ga0228599_1039461	F061214	VISAQCRLVNGFVKLTNISLALKETPINGGLIYKGPKV
Ga0228599_104172	Ga0228599_1041721	F013972	MTVPSSRQPNIEPGLQDQTSIALNLFNTILQTTTNRVELERSWATIERDISIQEQQEARQRQLRN
Ga0228599_104764	Ga0228599_1047641	F013972	MTVPNVRQPNVDIGLQDQTSIALNLFNTILQTARNRTELEQSWAAIERDITIQEQREERQRQLRN
Ga0228599_104995	Ga0228599_1049952	F011735	RGPYIVHRVLEKGAYELVDYDGIPLSEPRNGLYLKKYYA
Ga0228599_105858	Ga0228599_1058581	F102190	VTECFVKALRDVKVTGSEPEGTKNLAMLRVGVARAECNPQVILTA
Ga0228599_106309	Ga0228599_1063091	F013972	MTVPNGRQPNVEPGLQDQTSIALNLFNTILQTATNRIELERSWAAIERDITIQEQREERRRRLRN
Ga0228599_106584	Ga0228599_1065841	F089693	MTAPAVIQPNIQLGISDQTNIALSLFSTTLRTANTREELERSWAAIEQDIATQEQLEARRREHRNLH
Ga0228599_108930	Ga0228599_1089301	F102319	MTHTMIPGPITSWSKSLFCFKSKLMVMDVVAADRTNLAKKKKDGPSRAMLRSILLSVLHV