Sample 3300023561

Basic Information
IMG/M Taxon OID	3300023561 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128948 \| Gp0290736 \| Ga0247518
Sample Name	Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRU2 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRU2 (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	33692363
Sequencing Scaffolds	33
Novel Protein Genes	34
Associated Families	30

Dataset Contents

Total Genome Size

33692363

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus → unclassified Narnavirus → Plasmopara viticola lesion associated narnavirus 22	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis	3
Not Available	24
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium	2
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Lecanoromycetes → OSLEUM clade → Lecanoromycetidae → Lecanorales → Lecanorineae → Parmeliaceae → Bryoria → Bryoria tenuis	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus → unclassified Narnavirus → Plasmopara viticola lesion associated narnavirus 22

All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis

Not Available

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Lecanoromycetes → OSLEUM clade → Lecanoromycetidae → Lecanorales → Lecanorineae → Parmeliaceae → Bryoria → Bryoria tenuis

Ecosystem Assignment (GOLD)
Name	Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Ecosystem Assignment (GOLD)

Name

Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Type

Environmental

Taxonomy

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Czech Republic: South Bohemian Region
Coordinates	Lat. (^o)	49.044	Long. (^o)	13.617	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Czech Republic: South Bohemian Region

Coordinates

Lat. (^o)

49.044

Long. (^o)

13.617

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000396	Metagenome / Metatranscriptome	1185	Y
F001380	Metagenome / Metatranscriptome	709	Y
F003050	Metagenome / Metatranscriptome	510	Y
F004452	Metagenome / Metatranscriptome	437	Y
F004473	Metagenome / Metatranscriptome	436	Y
F007311	Metagenome / Metatranscriptome	353	Y
F008048	Metagenome / Metatranscriptome	340	Y
F009017	Metagenome / Metatranscriptome	324	Y
F011079	Metagenome / Metatranscriptome	295	Y
F018868	Metagenome / Metatranscriptome	232	Y
F022151	Metagenome / Metatranscriptome	215	Y
F024793	Metagenome / Metatranscriptome	204	Y
F028566	Metagenome / Metatranscriptome	191	Y
F030619	Metagenome / Metatranscriptome	184	Y
F036818	Metagenome / Metatranscriptome	169	Y
F037019	Metagenome / Metatranscriptome	168	Y
F040634	Metagenome / Metatranscriptome	161	N
F059015	Metagenome / Metatranscriptome	134	Y
F059538	Metagenome / Metatranscriptome	133	N
F059694	Metagenome / Metatranscriptome	133	Y
F065397	Metagenome / Metatranscriptome	127	Y
F068474	Metagenome / Metatranscriptome	124	Y
F075096	Metagenome / Metatranscriptome	119	Y
F076910	Metagenome / Metatranscriptome	117	N
F086425	Metagenome / Metatranscriptome	110	Y
F093894	Metagenome / Metatranscriptome	106	N
F098775	Metagenome / Metatranscriptome	103	Y
F102190	Metagenome / Metatranscriptome	101	Y
F104140	Metagenome / Metatranscriptome	100	Y
F106076	Metagenome / Metatranscriptome	100	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0247518_103429	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus → unclassified Narnavirus → Plasmopara viticola lesion associated narnavirus 22	1852	Open in IMG/M
Ga0247518_110084	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis	994	Open in IMG/M
Ga0247518_111685	Not Available	878	Open in IMG/M
Ga0247518_112355	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis	838	Open in IMG/M
Ga0247518_112940	Not Available	808	Open in IMG/M
Ga0247518_113509	Not Available	778	Open in IMG/M
Ga0247518_113539	Not Available	777	Open in IMG/M
Ga0247518_114443	All Organisms → cellular organisms → Bacteria	730	Open in IMG/M
Ga0247518_115138	Not Available	699	Open in IMG/M
Ga0247518_115252	Not Available	694	Open in IMG/M
Ga0247518_115261	Not Available	693	Open in IMG/M
Ga0247518_115514	Not Available	683	Open in IMG/M
Ga0247518_116515	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium	644	Open in IMG/M
Ga0247518_116518	Not Available	644	Open in IMG/M
Ga0247518_117649	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium	605	Open in IMG/M
Ga0247518_117813	Not Available	600	Open in IMG/M
Ga0247518_117970	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis	595	Open in IMG/M
Ga0247518_118149	Not Available	589	Open in IMG/M
Ga0247518_118217	Not Available	587	Open in IMG/M
Ga0247518_118250	Not Available	586	Open in IMG/M
Ga0247518_118462	Not Available	580	Open in IMG/M
Ga0247518_118800	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	572	Open in IMG/M
Ga0247518_118894	Not Available	569	Open in IMG/M
Ga0247518_118895	Not Available	569	Open in IMG/M
Ga0247518_119129	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Lecanoromycetes → OSLEUM clade → Lecanoromycetidae → Lecanorales → Lecanorineae → Parmeliaceae → Bryoria → Bryoria tenuis	563	Open in IMG/M
Ga0247518_119286	Not Available	559	Open in IMG/M
Ga0247518_119873	Not Available	544	Open in IMG/M
Ga0247518_119893	Not Available	544	Open in IMG/M
Ga0247518_119976	Not Available	542	Open in IMG/M
Ga0247518_120080	Not Available	539	Open in IMG/M
Ga0247518_120381	Not Available	532	Open in IMG/M
Ga0247518_120737	Not Available	524	Open in IMG/M
Ga0247518_121344	Not Available	511	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0247518_103429	Ga0247518_1034291	F030619	RAPENGFAFSRLSRSLPEPPQRECVRHLQAAKLTASAEFPTSAAALDSLRSFIALTPGVSGNGVLRHPRRLPSSSSSCLEWPATRGGIDGYLEHLGHMCEETGATQASFHAYAGDSLGGFCLRKASVVLRPCAGVAADLRESYRCAGLLYLRSQGKPFGMKATALRTPGYKVRVVGVPDCLTFVEGSWVRSSLRWLAPGHWRIDGESRKIPGGLHYRAGRRFASLDLSKATDGLSHPAVRVVIEGLASRGLIRSADLAMSMRSLGLERGATWSFPDLGDKIGEGSFLRGSPMGTPLSFVVLSWVNAWATSTFSRALTHGDDAVGRYTPGSLELDLYASRVASVGAALNREKTFKADHAWTACEIFALPRSHGEDKMTLFYPPSIPPSTLRAPVEADQRLENLWLRRMERVMKSRFPWIVKDPRLHLPVQVGGLGYTGRGLAVGVSVRRRLGALVSRGPSAVIAADLIGKKPFREVGLYPRPLCRVVRPGSYWKAVRATEQWFQAGGDTHVPLESLLSFKSCLIEDEVRLLEGDKFKRKRVAGRPDRTRAGAVFRRLGVAPCRPLTRRWGCSALIRWASLSRESEVTVPEDIASEIRERIPDPT
Ga0247518_110084	Ga0247518_1100841	F065397	LYFPDKLTLVMAILKTTATTDMRWMEIAPPRRVCMGRRRPVEKTLWPIAEERSLSNGELMDGLRPTFPAVSGFNAEGDNERFASAEF
Ga0247518_111685	Ga0247518_1116852	F007311	FFFFPSCCPPPFAVAPVTDYSMLDALRSPLRSDCSALRFLRPVPASDLTRRPTLSTPRLVQIAPHSTLCARAVHGSPRATDCSVVQHLELCPACGSLRPRWLTFHDALGLLLAHRFPPYGVPGLLRDRRVTLHAGLRIAPYSDALRPWPVHGFLRARS
Ga0247518_112355	Ga0247518_1123552	F065397	VQVRVFVSRLFSPDNLTLVMAIPKTTVTTDMRWMEIAPPRRVCGGRRRPFEKTLRPIAEERSVSNGELMEGLRPSFPAVSGFKAEGDNERFSSAEC
Ga0247518_112940	Ga0247518_1129401	F059538	VNSVVQPLLRPSATPVARLQLSLPLLPLAAPVSNLRLASAALLPARPRANPPARIGVVSPGSVGGKCSAFAAYYALPIDWLLTFQLALASCLQLGLRLLPTHIWRCPSARQVSQFPVLTGYCCNN
Ga0247518_113509	Ga0247518_1135091	F093894	VLGTELSVTSTGIQGQPRSNPCIALGASVEQGVIPDRG
Ga0247518_113539	Ga0247518_1135391	F098775	VKTRIRIRRRVLAWFVSRWRNHQLKQAEKPHSKFSARKTLNGPATRPKTPLAVENSVGKLAAPRKRCAPNSQRGKERVANSH
Ga0247518_114443	Ga0247518_1144432	F075096	MPWRPTSPESLELLRQVRREIAERGDFRLAMLLAGVELYAVLE
Ga0247518_114762	Ga0247518_1147621	F104140	MKLENKLDGASNFRAWKTRIDLILAKNKVLDIVKGKIVEPVFEEGKEKEPQNVAVI
Ga0247518_115138	Ga0247518_1151381	F024793	VNSASPELSLWFQRSRINQPDPAFPRSPGIILKLDNLNLTLNRL
Ga0247518_115252	Ga0247518_1152522	F068474	MIFFRVSTISTGSAAVFDSAFARRHGSRLFTLQLLFFHSPAVSFLTSPTPGSFSRGLPSLRGLPGPDSRFVPPFGVFLLAGSTFYF
Ga0247518_115261	Ga0247518_1152611	F009017	VRFACLLPGNRFSGYRFNAFRRAAAFYPKLDRSLVTAFSSPATASAFTDSIPRSMVLACYFAVSPAGFRARSVFPLHRRNWFAPIPAASTLQTRCTSTRKLIRPLSPSPLPFGSFTSLWIKAFNGRCCRPVRLPNPPDFRSLPATVLFLEEGHGSSFAIRYVFGGLLFLK
Ga0247518_115514	Ga0247518_1155141	F011079	LREKRRDPWLWANASSKAMADPKPVVKTRENNRRRVLTWFAGRWRNHQLKRAEKPHSKSACRKTPDGPATRPKTPLAVENGVGKP
Ga0247518_116515	Ga0247518_1165152	F036818	DMKNIQLSSVAGAGLLVFSLGAVAQDRDQDAYHSDRDAYFHDQHWRGHLFERVREDVQHVQAATWPGGGDQYRLGSTIDQLNVLQDKLANHVYDERDLDAVIGTLSRVVTDNRMAPRDRDILTDDLSRLRDYRANHADWDR
Ga0247518_116518	Ga0247518_1165181	F102190	MECVVKPLRDVKVTGSKPAGTKNPTMLRVGVAQAGCDP
Ga0247518_117649	Ga0247518_1176492	F036818	RRLLLSSVAGAGLLVFGMTATAQDRDRDPDSYRSERDARFNDQHWRGRLFDNIREDVEHVRSVTWPGGGDSYRLDRTVDQLNQLQSKLADHVYDERDLDDVIGVLSRVVSDNRMAPRDRDILTDDLTRLREYRDHHADWDR
Ga0247518_117813	Ga0247518_1178131	F000396	RGVMVPSDPISQLNSPPACNGTELCPQDCRAPSLQLPAAFFRTLRINAYGLTCQLSWLEPVSRSGLSLSRNDCLSPGHHFEVEAPDLLLQHPTVSSSCPFRFRFPSALQFALARARSIPKSRCLTPARHSRPFLGSPLPFGAFRALKDQSVQPDSRLGSSPSERSRLPITPRHRIHFLVGLDTGSPLQAR
Ga0247518_117970	Ga0247518_1179701	F065397	VQVRVFVSTLYSPHKLTLVLAIPMTTATTDMRWIEIAPPQRVFMGRRRALEKTLRPITEERSLSNGELMDGLRPTFPAVSGFKAEDDNERFASAEC
Ga0247518_118149	Ga0247518_1181491	F003050	MESVKAGAVAGEGKAVTSERFSFGKISCGASESVEAVAAKPAAGEQTDNAHGAPERDAQYGCMPVVSKAGNRVTCMP
Ga0247518_118217	Ga0247518_1182171	F040634	MHGTEHRISDCRAYSPQAPRLLVCPTSASPLLDAPQLIFPKRDRLLVAAFPSPRTTPACADSALRSMVPAFYFAHSLAVRPARSAFWLPRHGLVSPSFRRHPRLKPVAFCTGPLCQLCHQVPLPFRSFRSLRIKALHGLATVRSAFRNCPIFVRSPQPFLLKFGCGS
Ga0247518_118250	Ga0247518_1182501	F086425	MGSKFLACYFAHLPAGLPTRSAFRLRRQLLVCPSVRLHPRLKPVAFFTGLLCRLCRLSSLPFRNFRSLGINAPPSFATVRSAFWNRPIFVRSPQPFLLRCGCGSPFPIRYISRGLLSLK
Ga0247518_118462	Ga0247518_1184621	F004452	MRCGREALILGQRNRPWGSGTAKHSALLDALLCTVHAGGEQGCQSGHLE
Ga0247518_118800	Ga0247518_1188001	F008048	RIQICIGGKCMLKSSLLLFNDRGTAEERLWRAVITKTLEEWICGPLSFSRKAEQFLFHDNHDFKAVCSSAGMDPDRLRNRLRTIRARGIQKENIPFGARAAKKLGLSQAANWGQKAFGV
Ga0247518_118894	Ga0247518_1188941	F001380	PGFTVRFSDPSACGRSLCNKMLRLNSSSLSAAAFQRAAGHSNQQIFVGLSTLPEPESRYGLSLAHNDAFATIARSMFLACTFVSTSETFANPFDSRLFRSVRFRGRTGATSMPGTRFPLHSSTPRILPRSPLPLRPSFENPLDQSVRPVPNPEARLTRRPIVPYSPLLPLSIPLRISARNSLRLSLTYR
Ga0247518_118895	Ga0247518_1188951	F004473	VVKPVERFDPEGWKQPKGGWRPDGIMRAPEIGADNGSKVMNSPGIGFETEPSGGALDRTGSQRNTGVETKGQGRSVDLVMVAKASLRASERPSRVSGSGRMQVLKPRFPH
Ga0247518_119129	Ga0247518_1191291	F106076	XIKEWXAYVTVTPEDNKITVLSKGNSKGLIASIPIGGHWAPNSTVGDKALXKKAQNIAKKNNASLTINKATPMFNPLCTANVXFPRYVPSLITSRHHNVIEEIRDKKANIKNVFALLKPCIVNTPLVVNVSKAIHVYKGHGEGETKXKGWAXKLLLVKLVTYNISVASKSI
Ga0247518_119286	Ga0247518_1192862	F059694	MEFAQAKALLGEGKAVTSERFRLGEKSKAAARLKAMKRKLDKPVSGELTDEAHGAPECSAQYRAC
Ga0247518_119873	Ga0247518_1198731	F022151	NIDPLLILLKTAGSGERETIGRFDSVSLSAGIQVNALIGRGAKAPNGSGDLKNG
Ga0247518_119893	Ga0247518_1198931	F018868	MRSRTSHAAKSGVGEHAARESEAPNVCDGKERVAS
Ga0247518_119976	Ga0247518_1199761	F022151	NIDPLLILLKTAGSGERETIGRFDSVSLSAGIQVNALIGRGPKAPNGSGDLKNG
Ga0247518_120080	Ga0247518_1200801	F076910	VQTYQVSRAQAGKCRAVAAVPYVPKSSRAAGPTIGSRCVLTGAPPILEGQGERQLTGSVHTYRVCRGTETLGPSSEVTRLRRSRNPARAVLLDLASDTGEHFGSGNPSPSERGQSTCGCLEEIHRPAARPHRSTVAPGTAPPHGGWGEAREDTRKGLTFGQPAWVRQCPAKRRWC
Ga0247518_120381	Ga0247518_1203811	F037019	TSPHGPISPAFAGENSGIEPILQATCSWAWARLGSLSVNQQGAAFPHRRYDRDSFRRDRTPNRVAWRFPDWTAVGFAFPSPFLGSAPLGIPLPEHSRLVGLDLTIDGRLSLHGGQITGGDTNPDCQIRRFFAASSGGLVAGRRLSPCPHLFASHGLSLSESRSKLSGAFSDFAGHFH
Ga0247518_120737	Ga0247518_1207371	F028566	MRIRRNILAPAILTVGTIGSLVAGPVLALTTTAAPATAAVAVSVTPEVTVMHG
Ga0247518_121344	Ga0247518_1213441	F059015	RVHGTIQRPVCMRTFALRPDVRAKTAHRSPPPLFSMRQVIALSHLHHMSLSDRHPAGAGSSIRPFARSQRRFRHHCEVNVPGLHLRFHIGNLRESVRLQALSLRSVSRPNRGAVNAQNPLSAPTSNAPDFSPASTPLQVLLRKPSGSKRSTGSISGSPSYQTFDCSLLP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300023561: Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRU2 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences