3300027431: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A1a-11 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300027431
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095510 | Gp0072050 | Ga0207437
• Sample Name: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A1a-11 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 26696346
• Sequencing Scaffolds: 5
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2
Not Available	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → agricultural field → agricultural soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Wisconsin, United States
• Coordinates
  • Lat. (^o): 43.3
  • Long. (^o): -89.38
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013902	Metagenome	267	Y
F039358	Metagenome / Metatranscriptome	164	Y
F040398	Metagenome / Metatranscriptome	162	Y
F048216	Metagenome / Metatranscriptome	148	Y
F053396	Metagenome	141	N
F094081	Metagenome / Metatranscriptome	106	Y
F102094	Metagenome / Metatranscriptome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0207437_101453	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	639
Ga0207437_102832	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	553
Ga0207437_102907	Not Available	549
Ga0207437_103066	All Organisms → cellular organisms → Bacteria	542
Ga0207437_103735	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	517

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207437_100878	Ga0207437_1008782	F102094	MYVLIIVIGVLSQGASIVPVGVTSQVVGKFKNLDECKAAAKQPHAA
Ga0207437_101453	Ga0207437_1014531	F013902	GTFANLADGTTFSSGGNTFKANYHGGNGNDLVLTVQ
Ga0207437_101592	Ga0207437_1015922	F094081	MADDHRKTLKEEFTDRLEKAKGRLQQSFPEIQQSIKTSGAVEAARKIIDPAQSIFKQFADDIQLKDLIAKAEALVANANLTLTKAASKDAAPTEARPIGAPSNEPSAKK
Ga0207437_102832	Ga0207437_1028321	F048216	KVVCLMSLEEMPRDVKALEERIIEKVQQSGREFYAAVFYAFERRWLQERGGDYTAVRWRTINQVTPFGLIRLPVRVVRERGAQKGGYLSLSKALFKPKATRLLSPWVEKGVLEAATCSNYRPAAAELWRWVRVKVSAWLIWKCVQFHGARLCEQLERQWWPDRALPRKADVVVTEIDSTYLKAQ
Ga0207437_102907	Ga0207437_1029071	F039358	RGQTNIALQKPTFSVRVEEQAVTISGLKAGLWDGSLDVARIQVHLPSKEKKLRIETQLTLNGARSSSVRKSFSAGQKQPRVVRLNWNGAWRGSAAGEIPVDHPENFRWNGDMALDGDLIYASGQTNIALQKPTFSMHVEEQAVTISDLKAGLWDGSLDVARLQVPLASKEKKLRFEAQLKLDG
Ga0207437_103066	Ga0207437_1030662	F040398	IHVLAKGSSAVPNFLRLCIATSSDVLSKRRDDLVKFVAAEMDAYKYALANRSETIKVSQEMTHAKPDDKRAEFITDEAIKDKQIDPTLSIPLDRLDWMQNLFLKAGVIKQTVPIESIVDKSVNADAAKIAGK
Ga0207437_103735	Ga0207437_1037351	F053396	STDMIGLGVLNADYQSGAVEAKDVSQQAFDSAVRIQHTDPKDPSLKTAQRYLDAMFQEYGTAVTIQAKGGEAGERMYRAYGLANFAHDVLTQAQPALYKQGCDVGPLL