Metagenome / Metatranscriptome Family F100378

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F100378
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	59 residues
Representative Sequence	MSDAYAIVDIPKSLPIHGMALTSTGRKIEHNKVVVDTQTYESNGSVSLEKSGFSPL
Number of Associated Samples	18
Number of Associated Scaffolds	71

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	50.98 %
% of genes from short scaffolds (< 2000 bps)	70.59 %
Associated GOLD sequencing projects	18
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.19

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (82.353 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Unclassified → Unclassified → Seawater (78.431 % of family members)
Environment Ontology (ENVO)	Unclassified (83.333 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (88.235 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.19
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.19
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 71 Family Scaffolds
PF03151	TPT	2.82
PF13639	zf-RING_2	1.41
PF07714	PK_Tyr_Ser-Thr	1.41
PF13877	RPAP3_C	1.41
PF00628	PHD	1.41
PF07059	EDR2_C	1.41
PF12848	ABC_tran_Xtn	1.41
PF00400	WD40	1.41
PF06732	Pescadillo_N	1.41
PF16507	BLM10_mid	1.41
PF00063	Myosin_head	1.41
PF07779	Cas1_AcylT	1.41

COG ID	Name	Functional Category	% Frequency in 71 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	5.63

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	82.35 %
All Organisms	root	All Organisms	17.65 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	82.35 %
cellular organisms	root	All Organisms → cellular organisms	16.67 %
Viruses	superkingdom	All Organisms → Viruses	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	82.35 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	16.67 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	82.35 %
Sar	clade	All Organisms → cellular organisms → Eukaryota → Sar	14.71 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	82.35 %
Stramenopiles	clade	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles	13.73 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	82.35 %
Ochrophyta	clade	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta	13.73 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	82.35 %
Bacillariophyta	phylum	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	13.73 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	82.35 %
Coscinodiscophyceae	class	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae	10.78 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	82.35 %
Thalassiosirophycidae	subclass	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae	10.78 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	82.35 %
Thalassiosirales	order	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales	10.78 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	82.35 %
Thalassiosiraceae	family	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae	7.84 %
Skeletonemataceae	family	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae	0.98 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	82.35 %
Thalassiosira	genus	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira	7.84 %
Skeletonema	genus	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema	0.98 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	82.35 %
Thalassiosira pseudonana	species	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana	4.90 %
Thalassiosira oceanica	species	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica	0.98 %
Skeletonema marinoi-dohrnii complex	clade	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex	0.98 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	82.35 %
Thalassiosira pseudonana	species	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana	4.90 %
Skeletonema marinoi	species	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi	0.98 %
Thalassiosira oceanica	species	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica	0.98 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003270\|JGI26113J46593_1039931	Not Available	501	Open in IMG/M
3300003270\|JGI26113J46593_1039931	Not Available	501	Open in IMG/M
3300007864\|Ga0105749_1181667	Not Available	509	Open in IMG/M
3300019214\|Ga0180037_1146160	Not Available	518	Open in IMG/M
3300019214\|Ga0180037_1146160	Not Available	518	Open in IMG/M
3300019697\|Ga0194007_1032884	Not Available	561	Open in IMG/M
3300019697\|Ga0194007_1032884	Not Available	561	Open in IMG/M
3300019699\|Ga0193985_1051624	Not Available	510	Open in IMG/M
3300019703\|Ga0194021_1030574	Not Available	591	Open in IMG/M
3300019703\|Ga0194021_1046591	Not Available	522	Open in IMG/M
3300019721\|Ga0194011_1057179	Not Available	516	Open in IMG/M
3300019730\|Ga0194001_1058042	Not Available	537	Open in IMG/M
3300019730\|Ga0194001_1058042	Not Available	537	Open in IMG/M
3300021347\|Ga0213862_10335138	Not Available	538	Open in IMG/M
3300021373\|Ga0213865_10308863	Not Available	733	Open in IMG/M
3300021373\|Ga0213865_10308863	Not Available	733	Open in IMG/M
3300021373\|Ga0213865_10308863	Not Available	733	Open in IMG/M
3300021373\|Ga0213865_10481149	Not Available	533	Open in IMG/M
3300021907\|Ga0214480_100532	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira	19064	Open in IMG/M
3300021907\|Ga0214480_102061	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana	6621	Open in IMG/M
3300021907\|Ga0214480_102760	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana	4592	Open in IMG/M
3300021907\|Ga0214480_103383	Not Available	3450	Open in IMG/M
3300021907\|Ga0214480_103383	Not Available	3450	Open in IMG/M
3300021907\|Ga0214480_103383	Not Available	3450	Open in IMG/M
3300021907\|Ga0214480_106615	All Organisms → Viruses → Predicted Viral	1131	Open in IMG/M
3300021907\|Ga0214480_107874	Not Available	843	Open in IMG/M
3300021907\|Ga0214480_108309	Not Available	767	Open in IMG/M
3300021907\|Ga0214480_109014	Not Available	671	Open in IMG/M
3300021907\|Ga0214480_109038	Not Available	668	Open in IMG/M
3300021907\|Ga0214480_109038	Not Available	668	Open in IMG/M
3300021907\|Ga0214480_110093	Not Available	561	Open in IMG/M
3300021914\|Ga0214479_105365	Not Available	1303	Open in IMG/M
3300021914\|Ga0214479_105644	Not Available	1197	Open in IMG/M
3300021915\|Ga0214477_100226	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	39954	Open in IMG/M
3300021915\|Ga0214477_100389	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana	30676	Open in IMG/M
3300021915\|Ga0214477_100806	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales	19519	Open in IMG/M
3300021915\|Ga0214477_100806	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales	19519	Open in IMG/M
3300021915\|Ga0214477_101479	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	11033	Open in IMG/M
3300021915\|Ga0214477_105016	Not Available	1898	Open in IMG/M
3300021915\|Ga0214477_105433	Not Available	1672	Open in IMG/M
3300021915\|Ga0214477_105433	Not Available	1672	Open in IMG/M
3300021915\|Ga0214477_105433	Not Available	1672	Open in IMG/M
3300021915\|Ga0214477_105478	Not Available	1651	Open in IMG/M
3300021915\|Ga0214477_105478	Not Available	1651	Open in IMG/M
3300021915\|Ga0214477_105478	Not Available	1651	Open in IMG/M
3300021915\|Ga0214477_105478	Not Available	1651	Open in IMG/M
3300021915\|Ga0214477_105478	Not Available	1651	Open in IMG/M
3300021915\|Ga0214477_105478	Not Available	1651	Open in IMG/M
3300021915\|Ga0214477_107251	Not Available	1019	Open in IMG/M
3300021915\|Ga0214477_107251	Not Available	1019	Open in IMG/M
3300021915\|Ga0214477_107251	Not Available	1019	Open in IMG/M
3300021915\|Ga0214477_107251	Not Available	1019	Open in IMG/M
3300021915\|Ga0214477_107958	Not Available	880	Open in IMG/M
3300021915\|Ga0214477_109560	Not Available	653	Open in IMG/M
3300021915\|Ga0214477_109638	Not Available	645	Open in IMG/M
3300021915\|Ga0214477_109690	Not Available	639	Open in IMG/M
3300021915\|Ga0214477_109978	Not Available	612	Open in IMG/M
3300021915\|Ga0214477_110105	Not Available	601	Open in IMG/M
3300021915\|Ga0214477_110301	Not Available	582	Open in IMG/M
3300021915\|Ga0214477_110301	Not Available	582	Open in IMG/M
3300021915\|Ga0214477_111196	Not Available	516	Open in IMG/M
3300021915\|Ga0214477_111454	Not Available	500	Open in IMG/M
3300021916\|Ga0214481_101749	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	7865	Open in IMG/M
3300021916\|Ga0214481_102838	All Organisms → cellular organisms → Eukaryota	4350	Open in IMG/M
3300021916\|Ga0214481_102838	All Organisms → cellular organisms → Eukaryota	4350	Open in IMG/M
3300021916\|Ga0214481_103858	Not Available	2725	Open in IMG/M
3300021916\|Ga0214481_103858	Not Available	2725	Open in IMG/M
3300021916\|Ga0214481_103984	All Organisms → cellular organisms → Eukaryota → Sar	2585	Open in IMG/M
3300021916\|Ga0214481_104861	Not Available	1816	Open in IMG/M
3300021916\|Ga0214481_105586	Not Available	1420	Open in IMG/M
3300021916\|Ga0214481_106776	Not Available	1008	Open in IMG/M
3300021916\|Ga0214481_106974	Not Available	960	Open in IMG/M
3300021916\|Ga0214481_109144	Not Available	620	Open in IMG/M
3300021916\|Ga0214481_110108	Not Available	530	Open in IMG/M
3300021916\|Ga0214481_110390	Not Available	506	Open in IMG/M
3300022735\|Ga0214478_100280	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira	30294	Open in IMG/M
3300022735\|Ga0214478_100673	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana	19730	Open in IMG/M
3300022735\|Ga0214478_101052	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi	14820	Open in IMG/M
3300022735\|Ga0214478_102541	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana	7161	Open in IMG/M
3300022735\|Ga0214478_102812	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica	6468	Open in IMG/M
3300022735\|Ga0214478_103786	Not Available	4414	Open in IMG/M
3300022735\|Ga0214478_106373	Not Available	2090	Open in IMG/M
3300022735\|Ga0214478_106373	Not Available	2090	Open in IMG/M
3300022735\|Ga0214478_106373	Not Available	2090	Open in IMG/M
3300022735\|Ga0214478_106373	Not Available	2090	Open in IMG/M
3300022735\|Ga0214478_106373	Not Available	2090	Open in IMG/M
3300022735\|Ga0214478_106373	Not Available	2090	Open in IMG/M
3300022735\|Ga0214478_108141	Not Available	1495	Open in IMG/M
3300022735\|Ga0214478_108141	Not Available	1495	Open in IMG/M
3300022735\|Ga0214478_108669	Not Available	1379	Open in IMG/M
3300022735\|Ga0214478_112121	Not Available	930	Open in IMG/M
3300022735\|Ga0214478_112954	Not Available	862	Open in IMG/M
3300022735\|Ga0214478_119733	Not Available	572	Open in IMG/M
3300022735\|Ga0214478_119924	Not Available	567	Open in IMG/M
3300022735\|Ga0214478_120827	Not Available	546	Open in IMG/M
3300022735\|Ga0214478_122717	Not Available	505	Open in IMG/M
3300022735\|Ga0214478_122717	Not Available	505	Open in IMG/M
(restricted) 3300023114\|Ga0233405_10102304	Not Available	521	Open in IMG/M
3300032073\|Ga0315315_11557896	Not Available	570	Open in IMG/M
3300032073\|Ga0315315_11557896	Not Available	570	Open in IMG/M
3300032277\|Ga0316202_10382766	Not Available	657	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	92.16%
Freshwater	Environmental → Aquatic → Freshwater	7.84%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Unclassified	78.43%
Sediment	Environmental → Aquatic → Freshwater → Sediment	7.84%
Coastal	Environmental → Aquatic → Marine → Coastal	6.86%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	5.88%
Inlet	Environmental → Aquatic → Marine → Inlet	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	78.43%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	7.84%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	5.88%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	3.92%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	1.96%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	0.98%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	0.98%

Habitat	Taxonomy	Distribution
Seawater	Environmental → Aquatic → Marine → Unclassified → Unclassified → Seawater	78.43%
Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment	7.84%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	4.90%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	1.96%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	1.96%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	1.96%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	0.98%
Microbial Mat	Environmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat	0.98%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003270	Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_17_M020	Environmental	Open in IMG/M
3300007864	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1461B_3.0um	Environmental	Open in IMG/M
3300019214	Estuarine microbial communities from the Columbia River estuary - R.1189 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019697	Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FLC_3-4_MG	Environmental	Open in IMG/M
3300019699	Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FRC_1-2_MG	Environmental	Open in IMG/M
3300019703	Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BRC_7-8_MG	Environmental	Open in IMG/M
3300019721	Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FLC_7-8_MG	Environmental	Open in IMG/M
3300019730	Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FLT_7-8_MG	Environmental	Open in IMG/M
3300021347	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO266	Environmental	Open in IMG/M
3300021373	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282	Environmental	Open in IMG/M
3300021907	Marine eukaryotic communities from Monterey Bay, California, United States - M1_20Mar14CPVII9sort6BwellE17	Environmental	Open in IMG/M
3300021914	Marine eukaryotic communities from Monterey Bay, California, United States - M1_20Mar14CPVII9sort6BwellE14	Environmental	Open in IMG/M
3300021915	Marine eukaryotic communities from Monterey Bay, California, United States - M1_20Mar14CPVII9sort6BwellC16	Environmental	Open in IMG/M
3300021916	Marine eukaryotic communities from Monterey Bay, California, United States - M1_20Mar14CPVII9sort6BwellG10	Environmental	Open in IMG/M
3300022735	Marine eukaryotic communities from Monterey Bay, California, United States - M1_20Mar14CPVII9sort6BwellD7	Environmental	Open in IMG/M
3300023114 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_oxic_3_MG	Environmental	Open in IMG/M
3300032073	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416	Environmental	Open in IMG/M
3300032277	Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month pyrrhotite	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI26113J46593_10399311	3300003270	Marine	MSDAYAIVDIPKSLPIHGMALTSTGRKIEHNKVVVDTQTYESNGSVSLKKSGFSCL*
JGI26113J46593_10399312	3300003270	Marine	VDIPKSLPIHGMALTSTGRKIEHNKVVVDTQTYESNGSVSLKKSGFSCL*
Ga0105749_11816672	3300007864	Estuary Water	DAYATVDIPKSLPIHGMALTSTGRKIEHNKVVVGGAQTSESISSILLEKVGFSRLQCVGVLL*
Ga0180037_11461602	3300019214	Estuarine	MSDAYAIVHIPKSLPIHGMALTSTGRKIEHNKVVVDTQTYESNGSVSLKTLGFSRLRGVGVLS
Ga0180037_11461603	3300019214	Estuarine	CNSTMSDAYAIVHIPKSLPIHGMALTSTGREIEHNKVVVDTQTYESNVSVSLEKSGFSRLRGVAVLL
Ga0194007_10328841	3300019697	Sediment	YSIVDIPKSLLHGMALTSTGRKIEHNKVVLGTQTYESIISISLENVGFTRL
Ga0194007_10328842	3300019697	Sediment	MSDAYATVHIPKSLPIYGMALTSTGRKIEHNKVVVVTQTYESNGWVSHEKSGFSRLRGV
Ga0193985_10516241	3300019699	Sediment	PSCCNSTMSDAYATVHIPKSLPIHGMALTSTGRKIEHSKVVVGAQMYESNGSISPFFSGFSRLRGVAVLL
Ga0194021_10305741	3300019703	Sediment	SDAYSIVDIPKSLPIHGMALTSTGRKIEHNKVVLGTQTYESISSISLENVGFSRL
Ga0194021_10465911	3300019703	Sediment	MSDAYATVHIPKSLPIHGMALTSTGRKIEHNKVVVDTQTYELNGLVSLEKSGFSCL
Ga0194011_10571791	3300019721	Sediment	MSDAYSIVDIPRSLPIHGMALTSTGRKIEHNKVVLGTQTYESISSISLENVG
Ga0194001_10580422	3300019730	Sediment	MSDAYAIVDIPKSLPIHGMALTSTGRKIEHNKVVVDTQTYESNGSVSLIKIRDSLVFEV
Ga0194001_10580423	3300019730	Sediment	CNSTMSDAYAIVDIPKSLPIHGMALTSTGRKIEHSKVVVDTQTYESNGSVSLEKSGFSCL
Ga0213862_103351381	3300021347	Seawater	STTSDAYSIVDIPKSLPIHGMALASTGRKIEHNKVVLGTQTYESIRSISLENVGFSRLRGVGVLL
Ga0213865_103088632	3300021373	Seawater	MSDAYAIVDIPKSLPIHGMALTSTGRKIEHNKVVVDTQTYESNGSVFLEKSGFSRLRGVAVLL
Ga0213865_103088633	3300021373	Seawater	MSDAYAIVDIPKSLPIHGMALTSTGRKIEHNKVVVDTQTYESNGLVSLEKLGFSRLRGVAVLL
Ga0213865_103088634	3300021373	Seawater	DAYAIVDIPKSLPIHGMALTSTGRKIEHNKVVVDTQTYESNGLVSLEKLGFSRLRGVAVL
Ga0213865_104811491	3300021373	Seawater	MSDAYATVDIPKSLPIHGMALTSTGRKIEHNKVVVGAQLTNRSSGFPSKSRDSLVFEV
Ga0214480_10053214	3300021907	Seawater	MSDAYFSVDIPKSLPIHGMALTSTGRKIEHSKVVVDSTQTYKLNGSVSLKNLGFLVFEV
Ga0214480_1020617	3300021907	Seawater	MSDAYAIVHIPKSLPTHGMALTSTGRKIEHNKVVVDTQMYESNGSVSLEKSGFSPLRGVAVLL
Ga0214480_1027605	3300021907	Seawater	NSTMSDAYAIVDIPKSLPIHGMALTSTGRKIEHNKVVVGTQTSESLSWISLEKSGFSRLRGVAVLL
Ga0214480_1033831	3300021907	Seawater	MSDAYAPTHIPKSLPTHGMALTSTGRKIEHNKVVVDTQMYESNGSVSLVKSGFSPLRGVAVLL
Ga0214480_1033832	3300021907	Seawater	MSDAYAIVHIPTSLPIHGMALTSTGRKIEHNKVVVDTQMYESNGSVSLEKSGFSPLRGVAVLL
Ga0214480_1033833	3300021907	Seawater	MSDAYAIVHIPKSLPTHGMALTSTGRKIEHNKVVVDTQMYESNGSVSLEKSGISPLRGVAVLL
Ga0214480_1066151	3300021907	Seawater	AIVHIPKSLPIHGMALTSTGRKIEHNKVVVDTQTYELNGSVSFKKWGVFSRLRGVAVLL
Ga0214480_1078741	3300021907	Seawater	MSDAYATVHIPKSLTIHGMALTSTGRKIEHSKVVVGAQTYESNGSVSLKNWIFSRL
Ga0214480_1083091	3300021907	Seawater	KSLPIHGMALTSTGRKIEHSKVVVVTQTFESINSISLEKSGLSHL
Ga0214480_1090141	3300021907	Seawater	STMSDAYATVGIPKSLPIHGMALTSTGRKIEHNKVVVHTQTYESISSISLEIWDSVGFEV
Ga0214480_1090381	3300021907	Seawater	MSDAYAIVHIPKSLPIHGMALTSTGRKIEHNKVVVDTQTYELNGSVSLEKSGFSRFRGVADLL
Ga0214480_1090382	3300021907	Seawater	IPKSLPIHGMALTSTGRKIEHNKVVVDTQTYESNGSVSLEKSGFSRLRGVADLL
Ga0214480_1100931	3300021907	Seawater	MSDAYAIVDIPKSLPIHGMALTSTGRKIKHSKVVVGTQTYESLSSISLENVGFLVVEV
Ga0214479_1053651	3300021914	Seawater	MSDAYAIVDIPKSLSIHGMTLTSTGRKIEHNKVVVDTQTYESNGSVSLEKSGFSCL
Ga0214479_1056441	3300021914	Seawater	MSDAYVSVHILKSLPIHGMALTSTGRKIEHSKVVVYTQTFESISSISLEKSGLSHL
Ga0214477_10022634	3300021915	Seawater	SCYNSTMSDAYAIVDIPKSLPIHGMALTSTGRKIEHNKVVSGQTYKSNGSVSLEKSGFSRLRNVGVLL
Ga0214477_1003891	3300021915	Seawater	MSDEYAIVHIPKSLPIHGMALTSTGRKIEHNKVVVDTQTYESNGLVSLEKSGFSRLRGVAVLL
Ga0214477_10080617	3300021915	Seawater	MSDAYATVDIPKSLTIHGMALTSTGRKTEHNKVVVDTQTYELNGSVSLEKSGFSCLRGVAALLQLHHE
Ga0214477_10080618	3300021915	Seawater	MSDAYATVDIPKSLPIHGTALTSTGRKIEHNKVVVDTQTYELNGSVSLEKKSGFSCLRGVAALL
Ga0214477_1014795	3300021915	Seawater	AYATVDIPKSLPIHGMALTSTGRKIEHSKVVVDTQTYESNGSVSLEKSGFSCL
Ga0214477_1050161	3300021915	Seawater	STMSDAYAIVDIPKSLPIHGMALTSTGRKIEHSKVVVGTQTYESLSSISLENVGFSRLRGVAVLL
Ga0214477_1054331	3300021915	Seawater	IVDIPKSLPIHGMALISTGRKIEHNKVVVDTQTYESNGSVSLEKSGFSPLQGVAVLL
Ga0214477_1054332	3300021915	Seawater	MSDAYAIVDIPKSLPIHGMALTSTGRKIEHNKVVVDTQTYESNGSVSLEKSGFSPLQGVAVLL
Ga0214477_1054333	3300021915	Seawater	MSDAYAIVDIPKSLPIHGMALTSTGRKIEHNKVVVDTQTYESNGSVSLEKSGFSPLQGVAVLLQLHHE
Ga0214477_1054781	3300021915	Seawater	MSDAYAIVHIPKSLPIHGMALTSTGRKIEHRKVVVDTQTYESNDSVSLEKLEFSPPWGVAVLL
Ga0214477_1054782	3300021915	Seawater	MSDAYVIVDIPKSLPIHGMALTSTGRKIEHNKVVVDTQTYESNGSVSLEKLEFSPL
Ga0214477_1054783	3300021915	Seawater	MSDAYAIVHIPKSLPIHGMALTSTGRKIEHRKVVVDTQTYESNGSVSLEKLEFSPL
Ga0214477_1054784	3300021915	Seawater	MSDAYVIVDIPKSLPIHGMALTSTGRKIEHNKVVVDTQTYESNDSVSLEKLEFSPL
Ga0214477_1054785	3300021915	Seawater	MSDAYAIVGIPKSLPIHGMALTSTGRKIEHNKVVVDTQTYESNGSVSLEKLEFSPL
Ga0214477_1054786	3300021915	Seawater	MSDAYAIVHIPKSLPIHGMALTSTGRKIEHNKVVVDTQTYESNDSVSLEKLEFSPPWGVAVLL
Ga0214477_1072511	3300021915	Seawater	MSDAYAIVDIPKSLPIHGMALTSTGRKIEHSKVVVGTQTDESLSSISLENVGFSRLRGVAVLL
Ga0214477_1072512	3300021915	Seawater	MSDAYAIVDIPKSLPIQGMAFTSTGRKIEHSKVVVGTQTYESLSSISLENVGFSRLRGVAVLL
Ga0214477_1072513	3300021915	Seawater	MSDAYAIVDIPKSLPIHGMAFTSTGRKIEHSKVVVGTQTYESLSSISLENVGFSRLRGVAVLL
Ga0214477_1072514	3300021915	Seawater	DIPKSLPIHGMAFTSTGRKIEHSKVVVGTQTYESLSSISLENVGFSRLRGVAVLL
Ga0214477_1079582	3300021915	Seawater	MSDAYAIVDIPKSLPIHGMALTSTGRKIEHSKVVVGAQTYESISSISHENVGFSRLRGVAVLF
Ga0214477_1082871	3300021915	Seawater	MSDAYAIVDIPKSLPIHGMALTSTGRKIEHSKVVVGTQTYESLSSIHFPRKCGILS
Ga0214477_1095601	3300021915	Seawater	MSDAYAIVDISKSLPIHGMALTSTGRKTEHSKVVVGIQTYESTSSISLENVGFSR
Ga0214477_1096381	3300021915	Seawater	MSDAYSIVHIPKSLPIHGMALTSTGRKIEHNKVVVHTQTYDSLSSISLEKSGFSCL
Ga0214477_1096902	3300021915	Seawater	MSDVYAIVDIPKSLPIHGMALTSTGRKIEHRKVVVDTQTYESNGSVSLEKLEFSPPWGVAVLL
Ga0214477_1099781	3300021915	Seawater	SLPIHGMALTSTGRKIEHNKVVSDTQTYESNGSVSLEKSGFSRLGGVAVLL
Ga0214477_1101051	3300021915	Seawater	MSDAYAIVDIPKSLSIHGMTLTSTGRKIEHNKVVVDTQTYESNGSVSLEKSGVSCL
Ga0214477_1103011	3300021915	Seawater	MSDAYVIVDIPKSLPIHEMALTSTGRKIEHNKVVVDTQTYESNDSVSLEKLEFSPLRGVA
Ga0214477_1103013	3300021915	Seawater	TMSDAYAIVGIPKSLPIHGMALTSTGRKIEHNKVVVDTQTYEPNGSVSLEKSGFSPL
Ga0214477_1111961	3300021915	Seawater	AKVDIPKYLPIHGMALTSTGRKIEHSKVVVGTQTSESLSSVSLKKSRDSLVFKV
Ga0214477_1114541	3300021915	Seawater	MSDAYAIVDIPKSLPIQGMALTSTGRKIEHSKVVVGTQTYESLSSIFLENVGF
Ga0214481_1017491	3300021916	Seawater	SNSTTSDVYAIVDIPKSLPIHGMALTSSGRKIEHNKVVVVTQMYESNGSVSLEKSGF
Ga0214481_1028381	3300021916	Seawater	MSDVYAIVDIPKSLPIHGMALTSTGRKIEHSKVVVDTQTYESNGVSLEKGFSCL
Ga0214481_1028382	3300021916	Seawater	MSDVYAIVDIPKSLPIHGMALIGTGRKIEHNKVVVDTQMYESNGSVSLEKSGFSCL
Ga0214481_1038582	3300021916	Seawater	MSDAYAIVDIPKSLSIHGMALTSTGRKIEHNKVVVDTQTYESNGSVSLEKSGFSPL
Ga0214481_1038585	3300021916	Seawater	MSDAYAIVGIPKSLSIHGMALTSTGRKIEHNKVVVDTQTYESNGSVSLEKSGFSPL
Ga0214481_1039841	3300021916	Seawater	SDAYATVDIPKSLPIHGMALTSTGRKIEHNKVVVVTQTYESNGWGSLEKLGFSCL
Ga0214481_1048611	3300021916	Seawater	IVDIPKSLPIHGMALTSSGRKIEHNKVVVVTQTYESNGSVFLKNSGFSRL
Ga0214481_1055862	3300021916	Seawater	MSDAYATVVIPKSLPIHGVALTSTGRKTEHNKVVVGAQTSESTSSISLENVGFSRLRGVAVLL
Ga0214481_1067761	3300021916	Seawater	DEYAIVHIPKSLPIHGMALTSTGRKIEHNKVVVDTQTYESNGLVSLEKSGFSRLRGVAVL
Ga0214481_1069743	3300021916	Seawater	MSDAYAIVDIPKSLPIHGMALTSTGRKIEHNKVVVDTQTYESNGSVSLEKSGFSPL
Ga0214481_1091441	3300021916	Seawater	MSDAYAIVGIPKSLPIHGMAFTSTGRKIEHSKVVVGTQTYESLSSISLEVNVGFSRLRG
Ga0214481_1101082	3300021916	Seawater	YASVDIPKSLPIHGMALTSTGRKIEHNKVVADTQTYELNGLVSLKNLGFACLRGVAVLL
Ga0214481_1103901	3300021916	Seawater	MSDAYAIVDIPKSLPIHGMALTSTGRKIEHNKVVVGTQTSESLSWISLEKSGFS
Ga0214478_1002802	3300022735	Seawater	MSDAYATVDIPKSLPIHGMALTSTGRKIEHSKVVVGTQTYESNGSVSLKFLGISCLRGVAVLS
Ga0214478_10067319	3300022735	Seawater	MSDAYAIVGIPKSLPIHGMALTSTGRKIEHRKVVVDTQTYESNGSVSLEKLEFSPL
Ga0214478_1010521	3300022735	Seawater	MSDAYATVHIPKSLPIHGMALTSTGRKIEHSKVVVGAQTYESNGSVSLKNWGFSRLRGVAVL
Ga0214478_1025415	3300022735	Seawater	MSDAYSIVDIPKSLPIHGMALTSTGRKIERNKVVVGTQTYELISSISLENVGVSRLQGVGVLL
Ga0214478_1028121	3300022735	Seawater	VDIPKSLPIHGMALTSTGRKIEHNKVVVGTQTSESLSWISLEKSGFSCLRGVAVLL
Ga0214478_1037862	3300022735	Seawater	MSDAYAIVDIPKSLPIHGMALTSTDRKIEHNKVVVVTQTYESNGSVSLEKSGFSRP
Ga0214478_1063731	3300022735	Seawater	MHMQIVDIPKSLPIHGMALTSTGRKIEHSKVVVGAQTSESLSSVSLEKSGFSIVFKV
Ga0214478_1063732	3300022735	Seawater	MSDAYAKVDIPKYLPIHGMALTSTGRKIEHSKVVVGTQTSESLSSVSLKKSRDSLVFKV
Ga0214478_1063733	3300022735	Seawater	MSDAYEIVDIPKSLPIHGMALTSTGRKIEHSKVVVGTQTYESLSSVSLEKSGFSCL
Ga0214478_1063734	3300022735	Seawater	MSDAYAIVDIPKSLPIHGMALTSTDRKIEHSKVVLGTQTSESLCSVSLKKSRDSLVFKV
Ga0214478_1063735	3300022735	Seawater	MSDAYAIVDIPKYLPIHGMALTSTGRKIEHSKVVVGTQTSESLSSVSLEKSGFSRLQGVGVLL
Ga0214478_1063736	3300022735	Seawater	MSDAYAIVDIPKSLPIHGMALTSTGRKIEHSKVVVIGAQTSESLSSVSLEKSGFSIVFKV
Ga0214478_1081412	3300022735	Seawater	MSDAYVIVDIPKSLPIHGIVLTSTGRKIEHNKVMRNTQTYELNSSVSLKIWDSLIFEV
Ga0214478_1081413	3300022735	Seawater	MSDAYAIVGIPKSLPIHGMALTSTGRKIEHNKVVVDTQTYESNGSVSLEKLGFSPL
Ga0214478_1086692	3300022735	Seawater	MSDAYASVHILKSLRIHGMALTSTGRKIEHSKVVVVTQTFESISSISLEKSGLSHL
Ga0214478_1121211	3300022735	Seawater	MSDAYAIVDIPKSLSIHGMALTSTGRKIEHSKVVVGTQTYESLSSISLENVWDSLVFEV
Ga0214478_1129541	3300022735	Seawater	SDAYAIVGIPKSLPIHGMALTSTGRKIEHNKVVVDTQTYESNDSVSLEKLEFSPL
Ga0214478_1197332	3300022735	Seawater	MSDAYATVDIPKSLPIHGMALTSTGRKIEHNKVVVATQTYESISLVSLENVGVSVFEV
Ga0214478_1199242	3300022735	Seawater	MSDAYATVDIPKSLPIHGMALTSTGRKIEHNKVVVGTQTYESISLVSLENVGVSVFEV
Ga0214478_1208271	3300022735	Seawater	MSDAYATVDIPKSLPIHGMALTSTGRKIEHRKVTLHTQTYESNGSVSLKFLGISCLRGV
Ga0214478_1227172	3300022735	Seawater	MSDAYAIVDIPKSLPIHGMALTSTGRKIEHSKVVVGTQTNESLSSISLENVGFSRLQGVAVLL
Ga0214478_1227173	3300022735	Seawater	NSTMSDAYAIVDIPKSLPIHGMALTSTGRKIEHSKVVVGTQTYESLSSISLENVGFSRLRGVAVLL
(restricted) Ga0233405_101023041	3300023114	Seawater	SCCNSTMSDAYATVHIPKSLPIHGMALTSTGRKIEHNKVVVDTQTYESSGLVSLKTLGFSRLRGVGVLS
Ga0315315_115578961	3300032073	Seawater	YATVDIPKSLPIHGMALTSTGRKTEHSKVVVGIQTYESTSSISLEKVGFSRLRGVAVLF
Ga0315315_115578962	3300032073	Seawater	MSDAYATVDIPKSLPIHGMALTSTGRKTEHNKVVVGAQTSESTSSISHEKVGFSRLRGVA
Ga0316202_103827661	3300032277	Microbial Mat	MSDAYSIVDIPKSLPIHGMALTSTGRKIEHNKVVLGTQTYESISSISLENVGFSRLRGVGTFL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters