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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300021914 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0111469 | Gp0242136 | Ga0214479 |
| Sample Name | Marine eukaryotic communities from Monterey Bay, California, United States - M1_20Mar14CPVII9sort6BwellE14 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 54199393 |
| Sequencing Scaffolds | 25 |
| Novel Protein Genes | 25 |
| Associated Families | 3 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales | 2 |
| All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED88 | 6 |
| All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana | 3 |
| All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica | 3 |
| All Organisms → cellular organisms → Eukaryota | 2 |
| Not Available | 9 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Marine Eukaryotic Communities From Various Locations To Study Complex Ecological Interactions |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Unclassified → Unclassified → Seawater → Marine Eukaryotic Communities From Various Locations To Study Complex Ecological Interactions |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → bay → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: California | |||||||
| Coordinates | Lat. (o) | 36.746 | Long. (o) | -122.0257 | Alt. (m) | N/A | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F057890 | Metagenome / Metatranscriptome | 135 | N |
| F094948 | Metagenome / Metatranscriptome | 105 | Y |
| F100378 | Metagenome / Metatranscriptome | 102 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0214479_100189 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales | 38853 | Open in IMG/M |
| Ga0214479_100226 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales | 35731 | Open in IMG/M |
| Ga0214479_100452 | All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED88 | 24031 | Open in IMG/M |
| Ga0214479_100468 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana | 23738 | Open in IMG/M |
| Ga0214479_100486 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica | 23196 | Open in IMG/M |
| Ga0214479_100560 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana | 21050 | Open in IMG/M |
| Ga0214479_100619 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana | 19559 | Open in IMG/M |
| Ga0214479_100880 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica | 14973 | Open in IMG/M |
| Ga0214479_101095 | All Organisms → cellular organisms → Eukaryota | 12218 | Open in IMG/M |
| Ga0214479_101809 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica | 7082 | Open in IMG/M |
| Ga0214479_102153 | All Organisms → cellular organisms → Eukaryota | 5669 | Open in IMG/M |
| Ga0214479_102667 | All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED88 | 4098 | Open in IMG/M |
| Ga0214479_103070 | Not Available | 3290 | Open in IMG/M |
| Ga0214479_103349 | Not Available | 2882 | Open in IMG/M |
| Ga0214479_103486 | All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED88 | 2711 | Open in IMG/M |
| Ga0214479_103982 | All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED88 | 2182 | Open in IMG/M |
| Ga0214479_104446 | All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED88 | 1807 | Open in IMG/M |
| Ga0214479_105365 | Not Available | 1303 | Open in IMG/M |
| Ga0214479_105644 | Not Available | 1197 | Open in IMG/M |
| Ga0214479_107114 | Not Available | 823 | Open in IMG/M |
| Ga0214479_107270 | Not Available | 794 | Open in IMG/M |
| Ga0214479_107594 | Not Available | 740 | Open in IMG/M |
| Ga0214479_108424 | Not Available | 634 | Open in IMG/M |
| Ga0214479_109701 | Not Available | 516 | Open in IMG/M |
| Ga0214479_109924 | All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED88 | 500 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0214479_100189 | Ga0214479_1001896 | F057890 | MVLSSEGLHLLSNVAVWRHDFETINDKNVALWHRYYTDAINFYIMKETHREWIDNKNKEKKMKKEYSTSDGWEVFRFQISEEHRINRTFNNLNDFLDYWFHEYHNRQESSNRIEPCYMKKDTKKQSGQGPTGVQQEAVERYQKLCYTDKAIYRAIGKEYFRKKVVYDNN |
| Ga0214479_100226 | Ga0214479_1002266 | F057890 | MVLSSEGLHLLSSVAVWRHDFETINDKNVAMWHCYYIDVINFYIMKENHREWIDDNNKKKEKKKEYSTSDGWDVIRFQVSEEHRLNRTFNTLNDFLDYWFHVYHNRQESSRLEPMYMKQQTKNQSGQGPTGVQQEALERYQKLSYTDKAIYRAVAKEYFRKKK |
| Ga0214479_100452 | Ga0214479_10045214 | F057890 | MVLSSEGLHLLSNVAVWRHDFETINDKNVAMWHRYYIDVINYYIMKENDCQLIISNNNKKEYSTPDGWEVFRFQVSEEHRINQTFNTLNDFLDYWFHEYNNCQESSRLEPVYMKKQTKNQSGECPTGVQQEASERYQKLSYTDKAIYRAIGKEYFRKKK |
| Ga0214479_100468 | Ga0214479_1004681 | F094948 | MTAAWVLDCHYDIVHVLSSPQTTTTGVGVANCWADLEILAQSEARCRPTHGCKSAASTSTKVLQVFITC |
| Ga0214479_100486 | Ga0214479_10048617 | F057890 | MALSSEGLHLLSNIAVWRHDFETINDKNVAMWHHYYTDVINFYIMKENHREWMDNNNKKKEKKKEYSTSDGWDVIRFQVSEEHRINRKFNTLNDFLDYWFHEYHNRQESSRLEPIYMKKHTKKQSGQGPTGVQQEALERYQKLSYTDKAIYRAIAKEYFRKRK |
| Ga0214479_100560 | Ga0214479_10056017 | F094948 | MTAAWVLDCHYNIVHVLSSPQTTTTGVGVAKCWADLEILAQSEVRCRPTHGCKSATSTSTKVQQVFINLLGTQAMPIHQYIC |
| Ga0214479_100619 | Ga0214479_10061914 | F057890 | MVLSSEGLHLLSNVAVWRHDFETINDKNVAMWHRYYIDVINFYIMKENHREWIDNDKKKEKKKKEYSTSDGWDVIRFQVSEEHRINRTFNTLNDFLDYWFHEYHNRQESSRLEPMYMKKQTKKQSGVQQEAVERYQRLSYR |
| Ga0214479_100880 | Ga0214479_1008801 | F094948 | MTAAWVLDCHYNIVHVLSSPQTITTGVGVAKCWADLEILAQSEARCRPTHGCKSATSTST |
| Ga0214479_101095 | Ga0214479_1010952 | F057890 | MVLSSEGLHLLSNVAVWRHDFETISYKNVALWHRYYTDVINFHIMKENHREWIINNNNNKKKEYSASDGWDVFRFQVSEEHRINRTFNTLNDFLKYWFHEYNNRQESSRLEPMYMKKQTKKQSGIQQEAVERYQKLSYTDKAIYRAVAKEYFRKKK |
| Ga0214479_101809 | Ga0214479_1018093 | F094948 | MTAAWELDCHWNIAHVLSLPQTITTRVGVANCWADFEILAQSEARCLPTHGHKSAASTSRKVLQVFINLFCT |
| Ga0214479_102153 | Ga0214479_1021532 | F057890 | MVLSSEGLHLLSNVAVWRHDFETINDKNVALWHRYYTDVINFYIMKETHREWIDNKNKEKMMKKEYSTSDGWEVFRFQVSEEHRINRTFDNLNDFLDYWFHEYNNRQESSNRIEPCYMKKHTKKQSGQGPTGVQQEALERYQKLSYTDKAIYRAIGKEYFRKRVVYSHMSNVNN |
| Ga0214479_102667 | Ga0214479_1026672 | F057890 | MVLSSEGLHLLSNVAVWRHDFETINDKNVALWHRYYTDAINFYIMKETHREWIDNKNKEKKMKKEYSTSDGWEVFRFQIGEEHRINRTFNTLNDFLDYWFHEYNNRQESSNRIEPCYMKKHTKKQSGQGPTGVQQEALERYQKLCYTDKAIYRAIGKEYFRKKVVYDNN |
| Ga0214479_103070 | Ga0214479_1030701 | F094948 | MTAAWVFDCYYRIVHVSSSPQTITAGVGVANCWADLEIVAQSEARCRPTHGHKSAASTSRKVLQVIINLLGTQAMPIQQYICQPTYLGDH |
| Ga0214479_103349 | Ga0214479_1033491 | F057890 | LSSEGLHLLSNVAVWRHDFETINDKNVAMWHRYYTDVINFYIMKENHREWIDDNNKKKEKKKEYSTSDGWDVIRFQVSEEHRLNRTFDTLNDFLDYWFHEYHNRQESSRLEPIYMKKHTKKQSGQGPTGVQQEALERYQKLSYTDKAIYRAIGKEYFRKKK |
| Ga0214479_103486 | Ga0214479_1034862 | F057890 | MVLSSEGLHLLSNVAVWRHDFETINDKNVALWHRYYIDVINFYIMKENHREWIDNNNKKKEKKKEYSTSDGWDVIRFQVSEEHRINRPFNTLNDFLDYWFHEYHNRQESRNRIEPCYMKNHTKEQSGQGPTGVQQEALERYQKLSYTDKAIYRAIGKEYFRKRVVYSHMSNVNN |
| Ga0214479_103982 | Ga0214479_1039821 | F057890 | LLSSVAVWRHDFETINDKNVAMWHCYYIDVINFYITKENHREWIDDNNKKKEKKKEYSTSDGWDVIRFQVSEEHRINRTFNTLNDFLDYWFHECHNRQESSRLEPIYMKKHTKKQPGQGPTGVQQEALERYQKLSYTDKAIYRAVAKEYFRKKK |
| Ga0214479_104446 | Ga0214479_1044462 | F057890 | NPKLMVLSSEGLHLLSNVAVWRHDFETINDKNVALWHRYYTDVINYYIMKETHREWIDNKNKEKKMKKEYSTSDGWEVFRFQISEEHRINRTFNTLNDFLDYWFHEYNNRQESSNRIEPCYMKKQTKKQSGECPTGVQQEALERYQTLSYTDKAIYRAIGKEYFRKKVVYVNN |
| Ga0214479_105365 | Ga0214479_1053651 | F100378 | MSDAYAIVDIPKSLSIHGMTLTSTGRKIEHNKVVVDTQTYESNGSVSLEKSGFSCL |
| Ga0214479_105644 | Ga0214479_1056441 | F100378 | MSDAYVSVHILKSLPIHGMALTSTGRKIEHSKVVVYTQTFESISSISLEKSGLSHL |
| Ga0214479_107114 | Ga0214479_1071141 | F094948 | MTAAWVLDCHYNIVHVLSLPQTITTGVGVAKCWADLEILAQSEARCRPTHGCKSATSTSTKARQVFINLLGTQAMPIHQYIC |
| Ga0214479_107270 | Ga0214479_1072702 | F057890 | MVLSSEGLHLLSNVAVWRRHDFETINDKNVAVWHRYYIDVINYYIMKENDCQLIISNNNKKEYSTPDGWEVFRFQVSEEHRINQTFNTLNDFLDYWFHEYNNCQESSRLEPVYMKKQTKNQSGECPTGVQQEASERYQKLSYTDKAIYRAIGKEYFRKKK |
| Ga0214479_107594 | Ga0214479_1075941 | F094948 | MTAAWVLDCHYNIVHVLSSPQTITTGVGVAKCWADLEIFAQSEARCWPTHGCKSATSTSTKVLQVFINLLGTQAMPIHQYI |
| Ga0214479_108424 | Ga0214479_1084241 | F094948 | MTAAWALDCHYNIVHVSSLPQTITTGVGVAKYWADLEILPQSEARCRPTHGCKSATSTSRKVLQVFINLLGT |
| Ga0214479_109701 | Ga0214479_1097012 | F094948 | MTAAWVLDCHYNIVHVLSSPQTITTGVGVAKHVADFEILAQSEARCWPTHGCKSATSTSTKVLQVFINLLGTQAMPIHQYIC |
| Ga0214479_109924 | Ga0214479_1099241 | F057890 | NVAMWHRYYTDVINYYIMKETHREWIDNKNKEKKMKKEYSTSDGWEVFRFQISEEHRINRTFNTLNDFLDYWFHEYHNRQESSNRIEPCYMKKDTKKQSGQGPTGVQQEALERYQKLCYTDKAIYPNQFSYPDIMSGYASFYAQTIGILYPDKLSG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |