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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300021916 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0111469 | Gp0242138 | Ga0214481 |
| Sample Name | Marine eukaryotic communities from Monterey Bay, California, United States - M1_20Mar14CPVII9sort6BwellG10 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 51394148 |
| Sequencing Scaffolds | 23 |
| Novel Protein Genes | 25 |
| Associated Families | 3 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales | 1 |
| Not Available | 12 |
| All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED88 | 3 |
| All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta | 1 |
| All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi | 2 |
| All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica | 1 |
| All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana | 1 |
| All Organisms → cellular organisms → Eukaryota | 1 |
| All Organisms → cellular organisms → Eukaryota → Sar | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Marine Eukaryotic Communities From Various Locations To Study Complex Ecological Interactions |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Unclassified → Unclassified → Seawater → Marine Eukaryotic Communities From Various Locations To Study Complex Ecological Interactions |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → bay → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: California | |||||||
| Coordinates | Lat. (o) | 36.746 | Long. (o) | -122.0257 | Alt. (m) | N/A | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F057890 | Metagenome / Metatranscriptome | 135 | N |
| F094948 | Metagenome / Metatranscriptome | 105 | Y |
| F100378 | Metagenome / Metatranscriptome | 102 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0214481_100186 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales | 31749 | Open in IMG/M |
| Ga0214481_100779 | Not Available | 15074 | Open in IMG/M |
| Ga0214481_101397 | All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED88 | 9636 | Open in IMG/M |
| Ga0214481_101749 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta | 7865 | Open in IMG/M |
| Ga0214481_101908 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi | 7161 | Open in IMG/M |
| Ga0214481_102294 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica | 5760 | Open in IMG/M |
| Ga0214481_102698 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana | 4702 | Open in IMG/M |
| Ga0214481_102838 | All Organisms → cellular organisms → Eukaryota | 4350 | Open in IMG/M |
| Ga0214481_103571 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi | 3085 | Open in IMG/M |
| Ga0214481_103858 | Not Available | 2725 | Open in IMG/M |
| Ga0214481_103966 | All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED88 | 2606 | Open in IMG/M |
| Ga0214481_103984 | All Organisms → cellular organisms → Eukaryota → Sar | 2585 | Open in IMG/M |
| Ga0214481_104088 | Not Available | 2465 | Open in IMG/M |
| Ga0214481_104861 | Not Available | 1816 | Open in IMG/M |
| Ga0214481_105586 | Not Available | 1420 | Open in IMG/M |
| Ga0214481_105857 | All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED88 | 1298 | Open in IMG/M |
| Ga0214481_106776 | Not Available | 1008 | Open in IMG/M |
| Ga0214481_106974 | Not Available | 960 | Open in IMG/M |
| Ga0214481_109144 | Not Available | 620 | Open in IMG/M |
| Ga0214481_109337 | Not Available | 599 | Open in IMG/M |
| Ga0214481_109430 | Not Available | 592 | Open in IMG/M |
| Ga0214481_110108 | Not Available | 530 | Open in IMG/M |
| Ga0214481_110390 | Not Available | 506 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0214481_100186 | Ga0214481_10018628 | F057890 | MWHRYYIDVINYYIMKENDCQLIISNNKKKEYSTPDGWDVIRFQVSEEHRINRTFMTVNDFLEYWLKVYNSRQESSRLEPMYMKKHTKNESGECPTGVQHEASERYQKLSYTDKAIYRAIGKEYFRKKK |
| Ga0214481_100779 | Ga0214481_1007791 | F057890 | MVLSSEGLHLLSNVAVWRRHDFETINDKNVAVWHRYYIDVINYYIMKENDCQLIISNNNKKEYSTPDGWEVFRFQSVSEEHRINQTFNTLNDFLDYWFHEYNNCQESSRLEPVYMKKQTKNQSGECPTGVQQEASERYQKLSYTDKAIYRAIGKEYFRKKK |
| Ga0214481_101397 | Ga0214481_1013972 | F057890 | MVLSSEGLHLLSNVAVWRHDFETINDKNVALWHRYYIDVINFYIMKENHREWIDNNNNKKKEKKKEYSTSDGWDVIRFQVSEEHRINRPFNTLNDFLDYWFHEYHNRQESSRLEPIYMKKHTKKQPGQGPTGVQQEALERYQKLSYTDKAIYRAVAKEYFRKKK |
| Ga0214481_101749 | Ga0214481_1017491 | F100378 | SNSTTSDVYAIVDIPKSLPIHGMALTSSGRKIEHNKVVVVTQMYESNGSVSLEKSGF |
| Ga0214481_101908 | Ga0214481_1019086 | F057890 | MALSSEGLHLLSNVAVWRHDFETINDKNVAMWHRYYTDVINFYIMKENHREWIDNNNKNKKEKKEYSTSDGWDVIRFQVSEEHRINRTFDTLNDFLDYWFHEYHNRQESSRLEPIYMKKHTKKQSGQGPTGVQQGALERYQKLSYTDKAIYRAIGKEYFRKRSSP |
| Ga0214481_102294 | Ga0214481_1022943 | F057890 | MVLSSEGLHLLSNVAVWRHDFETINDKNVAMWHHYYTDVINFYIMKENHREWIDNNNKKKKEKKEYSTSDGWDVIRFQVSEERRINRTFNTLNDFLDYWFHEYHNRQESSRLEPIYMKKHTKKQSGQGPTGVQQEALERYQKLSYTDKAIYRAIGKEYFRKKSDLLTSDIVDTTTTQSNRLT |
| Ga0214481_102698 | Ga0214481_1026985 | F094948 | MTAAWVLDCHYNIVHVLSSPQTIATGVGVAKCWADLEILAQSEARYRPTHGCKSATSTSTKVLQVFTNLLGTQAMPIH |
| Ga0214481_102838 | Ga0214481_1028381 | F100378 | MSDVYAIVDIPKSLPIHGMALTSTGRKIEHSKVVVDTQTYESNGVSLEKGFSCL |
| Ga0214481_102838 | Ga0214481_1028382 | F100378 | MSDVYAIVDIPKSLPIHGMALIGTGRKIEHNKVVVDTQMYESNGSVSLEKSGFSCL |
| Ga0214481_103571 | Ga0214481_1035712 | F057890 | MIRMALQQENPKLMVLSSEGLHLLSNVALWRHDLETINDKNVALWHRYYTDVINFYIMKENHREWIDNNNKKKEKKKEYSTSDGWDVIRFQVSEEHRINRPFNTLNDFLDYWFHEYNSYRQESRNRIEPCYMKNHTKEQSGQGPTGVQQEALERYQKLSYTDKAIYRAIGKEYFRKKVVYVNN |
| Ga0214481_103858 | Ga0214481_1038582 | F100378 | MSDAYAIVDIPKSLSIHGMALTSTGRKIEHNKVVVDTQTYESNGSVSLEKSGFSPL |
| Ga0214481_103858 | Ga0214481_1038585 | F100378 | MSDAYAIVGIPKSLSIHGMALTSTGRKIEHNKVVVDTQTYESNGSVSLEKSGFSPL |
| Ga0214481_103966 | Ga0214481_1039662 | F057890 | MVLSSEGLHLLSNIAVWRHDFETINDKNVAMWHHYYTYVINFYIMKENHREWMDNNNKKKEKKKEYSTSDGWDVIRFQVSEEHRINRKFNTLNDFLDYWFHEYHNRQESSRLEPIYMKKHTKKQSGQGPTGVQQEALERYQKLSYTDKAIYRAIAKEYFRKRK |
| Ga0214481_103984 | Ga0214481_1039841 | F100378 | SDAYATVDIPKSLPIHGMALTSTGRKIEHNKVVVVTQTYESNGWGSLEKLGFSCL |
| Ga0214481_104088 | Ga0214481_1040881 | F057890 | LLSNVAVWRHDFETINDKNVALWHRYYIDVINYYIMKENDCQLIISNNKKKEYSTSDGWDVFRFQVSEEHRMNRTFNTLNDFLEYWFHEYHNRQESSRLEPVYMKKQTKEQSGECPTGVQQEASERYQKLSYTDKAIYRAIGKEYFRKKK |
| Ga0214481_104861 | Ga0214481_1048611 | F100378 | IVDIPKSLPIHGMALTSSGRKIEHNKVVVVTQTYESNGSVFLKNSGFSRL |
| Ga0214481_105586 | Ga0214481_1055862 | F100378 | MSDAYATVVIPKSLPIHGVALTSTGRKTEHNKVVVGAQTSESTSSISLENVGFSRLRGVAVLL |
| Ga0214481_105857 | Ga0214481_1058571 | F057890 | MVLSSEGLHLLSNVAIWRHDFETINDKNVAMWHRYYTDVINYYIMKETHREWIDNKNKEKKMKKEYSTSDGWEVFRFQISEEHRINRTFNTLNDFLDYWFHEYHNRQESSNRIEPCYMKKDTKKQSGQGPTGV |
| Ga0214481_106776 | Ga0214481_1067761 | F100378 | DEYAIVHIPKSLPIHGMALTSTGRKIEHNKVVVDTQTYESNGLVSLEKSGFSRLRGVAVL |
| Ga0214481_106974 | Ga0214481_1069743 | F100378 | MSDAYAIVDIPKSLPIHGMALTSTGRKIEHNKVVVDTQTYESNGSVSLEKSGFSPL |
| Ga0214481_109144 | Ga0214481_1091441 | F100378 | MSDAYAIVGIPKSLPIHGMAFTSTGRKIEHSKVVVGTQTYESLSSISLEVNVGFSRLRG |
| Ga0214481_109337 | Ga0214481_1093371 | F094948 | MTAAWGLDCHYNIVHVLSSPQTTTTGAGVAKCWADLEILAQSEVRCRPTHGCKSATSTSTKVQQVFINLLGTQAMPIRQ |
| Ga0214481_109430 | Ga0214481_1094301 | F094948 | MTAAWVFDCYYRIVHVSSSPQTITAGVGVANCWADLEIVAQSEARCRPTHGHKSAASTSRKVL |
| Ga0214481_110108 | Ga0214481_1101082 | F100378 | YASVDIPKSLPIHGMALTSTGRKIEHNKVVADTQTYELNGLVSLKNLGFACLRGVAVLL |
| Ga0214481_110390 | Ga0214481_1103901 | F100378 | MSDAYAIVDIPKSLPIHGMALTSTGRKIEHNKVVVGTQTSESLSWISLEKSGFS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |