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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300021915 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0111469 | Gp0242134 | Ga0214477 |
| Sample Name | Marine eukaryotic communities from Monterey Bay, California, United States - M1_20Mar14CPVII9sort6BwellC16 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 65346083 |
| Sequencing Scaffolds | 32 |
| Novel Protein Genes | 46 |
| Associated Families | 4 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira | 1 |
| All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana | 4 |
| All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta | 4 |
| All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica | 2 |
| All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED88 | 4 |
| All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales | 2 |
| Not Available | 15 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Marine Eukaryotic Communities From Various Locations To Study Complex Ecological Interactions |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Unclassified → Unclassified → Seawater → Marine Eukaryotic Communities From Various Locations To Study Complex Ecological Interactions |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → bay → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: California | |||||||
| Coordinates | Lat. (o) | 36.746 | Long. (o) | -122.0257 | Alt. (m) | N/A | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F051162 | Metagenome / Metatranscriptome | 144 | Y |
| F057890 | Metagenome / Metatranscriptome | 135 | N |
| F094948 | Metagenome / Metatranscriptome | 105 | Y |
| F100378 | Metagenome / Metatranscriptome | 102 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0214477_100002 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira | 168108 | Open in IMG/M |
| Ga0214477_100159 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana | 46228 | Open in IMG/M |
| Ga0214477_100226 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta | 39954 | Open in IMG/M |
| Ga0214477_100233 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta | 39109 | Open in IMG/M |
| Ga0214477_100332 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana | 33507 | Open in IMG/M |
| Ga0214477_100389 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana | 30676 | Open in IMG/M |
| Ga0214477_100411 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica | 29705 | Open in IMG/M |
| Ga0214477_100604 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana | 24061 | Open in IMG/M |
| Ga0214477_100788 | All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED88 | 19913 | Open in IMG/M |
| Ga0214477_100806 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales | 19519 | Open in IMG/M |
| Ga0214477_101309 | All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED88 | 12679 | Open in IMG/M |
| Ga0214477_101353 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales | 12218 | Open in IMG/M |
| Ga0214477_101479 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta | 11033 | Open in IMG/M |
| Ga0214477_102751 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica | 5013 | Open in IMG/M |
| Ga0214477_103404 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta | 3587 | Open in IMG/M |
| Ga0214477_104548 | All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED88 | 2242 | Open in IMG/M |
| Ga0214477_105016 | Not Available | 1898 | Open in IMG/M |
| Ga0214477_105433 | Not Available | 1672 | Open in IMG/M |
| Ga0214477_105478 | Not Available | 1651 | Open in IMG/M |
| Ga0214477_106968 | Not Available | 1088 | Open in IMG/M |
| Ga0214477_107251 | Not Available | 1019 | Open in IMG/M |
| Ga0214477_107958 | Not Available | 880 | Open in IMG/M |
| Ga0214477_109560 | Not Available | 653 | Open in IMG/M |
| Ga0214477_109638 | Not Available | 645 | Open in IMG/M |
| Ga0214477_109690 | Not Available | 639 | Open in IMG/M |
| Ga0214477_109945 | All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED88 | 615 | Open in IMG/M |
| Ga0214477_109978 | Not Available | 612 | Open in IMG/M |
| Ga0214477_110105 | Not Available | 601 | Open in IMG/M |
| Ga0214477_110301 | Not Available | 582 | Open in IMG/M |
| Ga0214477_111196 | Not Available | 516 | Open in IMG/M |
| Ga0214477_111214 | Not Available | 515 | Open in IMG/M |
| Ga0214477_111454 | Not Available | 500 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0214477_100002 | Ga0214477_10000250 | F057890 | MVLSSEGLHLLSNVAIWRHDFETINDKNVAMWHRYYTDVINYYIMKETHREWIDNKNKEKKMKKEYSTSDGWEVFRFQISEEHRINRTFNTLNDFLDYWFHEYHNRQESSNRIEPCYMKKDTKKQSGQGPTGVQQEALERYQKLCYTDKAIYPNQFSYPDIMSGYASFYAQTIGILYPDKLSG |
| Ga0214477_100159 | Ga0214477_1001593 | F057890 | MVLSSEGLHLLSSVAVWRHDFETINDKNVAMWHCYYIDVINFYITKENHREWIDDNKKKKEKKKEYSTSDGWDVIRFQVSEEHRINRTFNTLNDFLKYWFHEYNNRQESSRLEPIYMKKHTKKQPGQGPTGVQQEALERYQKLSYTDKAIYRAVAKEYFRKKK |
| Ga0214477_100226 | Ga0214477_10022634 | F100378 | SCYNSTMSDAYAIVDIPKSLPIHGMALTSTGRKIEHNKVVSGQTYKSNGSVSLEKSGFSRLRNVGVLL |
| Ga0214477_100233 | Ga0214477_1002332 | F057890 | MVLSSEGLHLLSNVAVWRHDFETINDKNVAMWHRYYTDVINFYIMKENHREWIDDNNKKKEKKKEYSTSDGWDVIRFQVSEEHRLNRTFDTLNDFLDYWFHEYHNRQESSRLEPIYMKKHTKKQSGQGPTGVQQEALERYQKLSYTDKAIYRAIGKEYFRKKK |
| Ga0214477_100332 | Ga0214477_1003322 | F057890 | MVLSSEGLHLLSNVAVWRHDFETINDKNVAMWHRYYIDVINYYIMKENDCQLIISNNNKKEYSTPDGWEVFRFQVSEEHRINQTFMTVNDFLEYWLKVYNSRQESSRLEPMYMKKHTKNQSGECPTGVQQEASERYQKLSYTDKAIYRAIGKEYFRKKK |
| Ga0214477_100389 | Ga0214477_1003891 | F100378 | MSDEYAIVHIPKSLPIHGMALTSTGRKIEHNKVVVDTQTYESNGLVSLEKSGFSRLRGVAVLL |
| Ga0214477_100411 | Ga0214477_1004111 | F094948 | MTAAWVLDCHYNIAHVLSLPQTITTRVGVANCWADFEILAQSEARCLPTHGHKSAASTSRKVLQVFINLFCT |
| Ga0214477_100604 | Ga0214477_10060417 | F094948 | MTAAWVLDCHYNIVHVLSSPQTTTTGAGVAKCWADLEILAQSEVRCRPTHGCKSATSTSTKVQQVFINLLGTQAMPIHQYIC |
| Ga0214477_100788 | Ga0214477_10078813 | F057890 | MVLSSEGLHLLSNVAVWRHDFETINDKNVALWHRYYIDVINFYIMKENHREWIDNNNKKKEKKKEYSTSDGWDVIRFQVSEEHRINRPFNTLNDFLDYWFHEYHNRQESRNRIEPCYMKNHTKEQSGQGPTGVQQEALERYQKLSYTDKAIYRAIGKEYFRKKVVYSHMSNVNN |
| Ga0214477_100806 | Ga0214477_10080617 | F100378 | MSDAYATVDIPKSLTIHGMALTSTGRKTEHNKVVVDTQTYELNGSVSLEKSGFSCLRGVAALLQLHHE |
| Ga0214477_100806 | Ga0214477_10080618 | F100378 | MSDAYATVDIPKSLPIHGTALTSTGRKIEHNKVVVDTQTYELNGSVSLEKKSGFSCLRGVAALL |
| Ga0214477_101309 | Ga0214477_1013095 | F057890 | MVLSSEGLHLLSNVAVWRHDFETINDKNVALWHRYYTDVINYYIMKETHREWIDNKNKEKKMKKEYSTSDGWEVFRFQVSEEHRINRTFNTLNDFLDYWFHEYNNRQESSNRIEPCYMKNHTKKQSGQGPTGVQQEALERYQKLSYTDKAIYRAIGKEYFRKRVVYSHMSNVNN |
| Ga0214477_101353 | Ga0214477_1013531 | F094948 | MTAAWVLDCHYNIVHVPSSPQTTTTGVGVAKCWADLEILAQSEVRCRPTHGCKSATSTSTKVLQVFINLLDTQAMPIHQYICQPTSLGGL |
| Ga0214477_101353 | Ga0214477_1013532 | F094948 | MTAAWVLDCHYNIVHVPSSPQTTTTGVGVAKCWADLEILAQSEVRCRPTHGCKSATSTSTKVLQVFINLLDTQAMPIHQYICQPTSLGGC |
| Ga0214477_101479 | Ga0214477_1014795 | F100378 | AYATVDIPKSLPIHGMALTSTGRKIEHSKVVVDTQTYESNGSVSLEKSGFSCL |
| Ga0214477_102751 | Ga0214477_1027513 | F051162 | MPLVKVFTRVGMTKSIPLSSLQSKLCDIWGTKPETTKIILQRVEDWTSDSFHEDVYIDIRAYGKEERTRDFVLDGMKDVQKAFGEFDLLANVRLETYEGERYFHVPPPKK |
| Ga0214477_103404 | Ga0214477_1034044 | F057890 | MVLSSEGLHLLSSVAVWRHDFETINDKNVAMWHCYYTDAINFYIMKETHREWIDNKNKEKKMKKEYSTSDGWDVIRFQVSEEHRLNRTFNTLNDFLDYWFHEYHNLQESSRLVPMYMKQQTKKQSGQGPTGVQQEALERYKKLSYTDKAIYRAVAKEYFRKKK |
| Ga0214477_104548 | Ga0214477_1045482 | F057890 | MVLSSEGLHLLSNVAVWRHDFETINDKNVALWHRYYTDVINYYIMKETHREWIDNKNKEKKMKKEYSTSDGWEVFRFQISEEHRINRTFNTLNDFLDYWFHEYNNRQESSNRIEPCYMKKQTKKQSGECPTGVQQEALERYQTLSYTDKAIYRAIGKEYFRKKVVYVNN |
| Ga0214477_105016 | Ga0214477_1050161 | F100378 | STMSDAYAIVDIPKSLPIHGMALTSTGRKIEHSKVVVGTQTYESLSSISLENVGFSRLRGVAVLL |
| Ga0214477_105433 | Ga0214477_1054331 | F100378 | IVDIPKSLPIHGMALISTGRKIEHNKVVVDTQTYESNGSVSLEKSGFSPLQGVAVLL |
| Ga0214477_105433 | Ga0214477_1054332 | F100378 | MSDAYAIVDIPKSLPIHGMALTSTGRKIEHNKVVVDTQTYESNGSVSLEKSGFSPLQGVAVLL |
| Ga0214477_105433 | Ga0214477_1054333 | F100378 | MSDAYAIVDIPKSLPIHGMALTSTGRKIEHNKVVVDTQTYESNGSVSLEKSGFSPLQGVAVLLQLHHE |
| Ga0214477_105478 | Ga0214477_1054781 | F100378 | MSDAYAIVHIPKSLPIHGMALTSTGRKIEHRKVVVDTQTYESNDSVSLEKLEFSPPWGVAVLL |
| Ga0214477_105478 | Ga0214477_1054782 | F100378 | MSDAYVIVDIPKSLPIHGMALTSTGRKIEHNKVVVDTQTYESNGSVSLEKLEFSPL |
| Ga0214477_105478 | Ga0214477_1054783 | F100378 | MSDAYAIVHIPKSLPIHGMALTSTGRKIEHRKVVVDTQTYESNGSVSLEKLEFSPL |
| Ga0214477_105478 | Ga0214477_1054784 | F100378 | MSDAYVIVDIPKSLPIHGMALTSTGRKIEHNKVVVDTQTYESNDSVSLEKLEFSPL |
| Ga0214477_105478 | Ga0214477_1054785 | F100378 | MSDAYAIVGIPKSLPIHGMALTSTGRKIEHNKVVVDTQTYESNGSVSLEKLEFSPL |
| Ga0214477_105478 | Ga0214477_1054786 | F100378 | MSDAYAIVHIPKSLPIHGMALTSTGRKIEHNKVVVDTQTYESNDSVSLEKLEFSPPWGVAVLL |
| Ga0214477_106968 | Ga0214477_1069682 | F057890 | MALSSEGLHLLSNVAVWRHDFETINDKNVAMWHRYYTDVINFYIMKENHREWIDDNNKKKEKKKEYSTSDGWDVIRFQVSEEHRLNRTFDTLNDFLDYWFHEYHNRQESSRLEPIYMKKHTKKQSGQGPTGVQQGALERYQKLSYTDKAIYRAIGKEYFRKRSSP |
| Ga0214477_107251 | Ga0214477_1072511 | F100378 | MSDAYAIVDIPKSLPIHGMALTSTGRKIEHSKVVVGTQTDESLSSISLENVGFSRLRGVAVLL |
| Ga0214477_107251 | Ga0214477_1072512 | F100378 | MSDAYAIVDIPKSLPIQGMAFTSTGRKIEHSKVVVGTQTYESLSSISLENVGFSRLRGVAVLL |
| Ga0214477_107251 | Ga0214477_1072513 | F100378 | MSDAYAIVDIPKSLPIHGMAFTSTGRKIEHSKVVVGTQTYESLSSISLENVGFSRLRGVAVLL |
| Ga0214477_107251 | Ga0214477_1072514 | F100378 | DIPKSLPIHGMAFTSTGRKIEHSKVVVGTQTYESLSSISLENVGFSRLRGVAVLL |
| Ga0214477_107958 | Ga0214477_1079582 | F100378 | MSDAYAIVDIPKSLPIHGMALTSTGRKIEHSKVVVGAQTYESISSISHENVGFSRLRGVAVLF |
| Ga0214477_108287 | Ga0214477_1082871 | F100378 | MSDAYAIVDIPKSLPIHGMALTSTGRKIEHSKVVVGTQTYESLSSIHFPRKCGILS |
| Ga0214477_109560 | Ga0214477_1095601 | F100378 | MSDAYAIVDISKSLPIHGMALTSTGRKTEHSKVVVGIQTYESTSSISLENVGFSR |
| Ga0214477_109638 | Ga0214477_1096381 | F100378 | MSDAYSIVHIPKSLPIHGMALTSTGRKIEHNKVVVHTQTYDSLSSISLEKSGFSCL |
| Ga0214477_109690 | Ga0214477_1096902 | F100378 | MSDVYAIVDIPKSLPIHGMALTSTGRKIEHRKVVVDTQTYESNGSVSLEKLEFSPPWGVAVLL |
| Ga0214477_109945 | Ga0214477_1099451 | F057890 | MVLSSEGLHLLSSVAVWRHDFETINDKNVAMWHCYYIDVINFYITKENHREWIDDNNKKKEKKKEYSTSDGWDVIRFQVSEEHRINRTFNTLNDFLDYWFHECHNRQESSRLEPIYMKKHTKKQPGQGPTGVQQEALERYQKLSY |
| Ga0214477_109978 | Ga0214477_1099781 | F100378 | SLPIHGMALTSTGRKIEHNKVVSDTQTYESNGSVSLEKSGFSRLGGVAVLL |
| Ga0214477_110105 | Ga0214477_1101051 | F100378 | MSDAYAIVDIPKSLSIHGMTLTSTGRKIEHNKVVVDTQTYESNGSVSLEKSGVSCL |
| Ga0214477_110301 | Ga0214477_1103011 | F100378 | MSDAYVIVDIPKSLPIHEMALTSTGRKIEHNKVVVDTQTYESNDSVSLEKLEFSPLRGVA |
| Ga0214477_110301 | Ga0214477_1103013 | F100378 | TMSDAYAIVGIPKSLPIHGMALTSTGRKIEHNKVVVDTQTYEPNGSVSLEKSGFSPL |
| Ga0214477_111196 | Ga0214477_1111961 | F100378 | AKVDIPKYLPIHGMALTSTGRKIEHSKVVVGTQTSESLSSVSLKKSRDSLVFKV |
| Ga0214477_111214 | Ga0214477_1112141 | F094948 | MTAAWVLDCNYNIVHVLSSPQTTTTGVGVAKCWADLEILAQSEARCWPTLGCKSATSTSTKVLQVFINLLGT |
| Ga0214477_111454 | Ga0214477_1114541 | F100378 | MSDAYAIVDIPKSLPIQGMALTSTGRKIEHSKVVVGTQTYESLSSIFLENVGF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |