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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300022735 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0111469 | Gp0242135 | Ga0214478 |
| Sample Name | Marine eukaryotic communities from Monterey Bay, California, United States - M1_20Mar14CPVII9sort6BwellD7 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 83362979 |
| Sequencing Scaffolds | 26 |
| Novel Protein Genes | 33 |
| Associated Families | 4 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta | 1 |
| All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira | 2 |
| All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED88 | 4 |
| All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana | 2 |
| All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi | 1 |
| Not Available | 13 |
| All Organisms → cellular organisms → Eukaryota → Sar | 1 |
| All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica | 1 |
| All Organisms → Viruses → Predicted Viral | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Marine Eukaryotic Communities From Various Locations To Study Complex Ecological Interactions |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Unclassified → Unclassified → Seawater → Marine Eukaryotic Communities From Various Locations To Study Complex Ecological Interactions |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → bay → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: California | |||||||
| Coordinates | Lat. (o) | 36.746 | Long. (o) | -122.0257 | Alt. (m) | N/A | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000866 | Metagenome / Metatranscriptome | 855 | Y |
| F057890 | Metagenome / Metatranscriptome | 135 | N |
| F094948 | Metagenome / Metatranscriptome | 105 | Y |
| F100378 | Metagenome / Metatranscriptome | 102 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0214478_100034 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta | 58010 | Open in IMG/M |
| Ga0214478_100280 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira | 30294 | Open in IMG/M |
| Ga0214478_100475 | All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED88 | 23555 | Open in IMG/M |
| Ga0214478_100487 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira | 23269 | Open in IMG/M |
| Ga0214478_100673 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana | 19730 | Open in IMG/M |
| Ga0214478_101052 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi | 14820 | Open in IMG/M |
| Ga0214478_102125 | Not Available | 8491 | Open in IMG/M |
| Ga0214478_102370 | All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED88 | 7646 | Open in IMG/M |
| Ga0214478_102473 | All Organisms → cellular organisms → Eukaryota → Sar | 7358 | Open in IMG/M |
| Ga0214478_102541 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana | 7161 | Open in IMG/M |
| Ga0214478_102812 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica | 6468 | Open in IMG/M |
| Ga0214478_103786 | Not Available | 4414 | Open in IMG/M |
| Ga0214478_105023 | All Organisms → Viruses → Predicted Viral | 3004 | Open in IMG/M |
| Ga0214478_106373 | Not Available | 2090 | Open in IMG/M |
| Ga0214478_108141 | Not Available | 1495 | Open in IMG/M |
| Ga0214478_108669 | Not Available | 1379 | Open in IMG/M |
| Ga0214478_108734 | All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED88 | 1367 | Open in IMG/M |
| Ga0214478_110181 | Not Available | 1134 | Open in IMG/M |
| Ga0214478_111097 | Not Available | 1028 | Open in IMG/M |
| Ga0214478_112121 | Not Available | 930 | Open in IMG/M |
| Ga0214478_112954 | Not Available | 862 | Open in IMG/M |
| Ga0214478_113294 | All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED88 | 837 | Open in IMG/M |
| Ga0214478_119733 | Not Available | 572 | Open in IMG/M |
| Ga0214478_119924 | Not Available | 567 | Open in IMG/M |
| Ga0214478_120827 | Not Available | 546 | Open in IMG/M |
| Ga0214478_122717 | Not Available | 505 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0214478_100034 | Ga0214478_10003439 | F057890 | MVLSSEGLDLLSNVAVWRHDFETINDKNVAMWHRYYIDVINYYIMKENECQLIISNNNKKKEKKKEYSTSDGWDVIRFQVSEEHRLNRTFNTLNDFLDYWFHEYHNRQKSSRLEPMYMKQQTKKQSGQGPTGVQQEALERYQKLSYTDKAIYRAVAKEYFRKKK |
| Ga0214478_100280 | Ga0214478_1002802 | F100378 | MSDAYATVDIPKSLPIHGMALTSTGRKIEHSKVVVGTQTYESNGSVSLKFLGISCLRGVAVLS |
| Ga0214478_100475 | Ga0214478_10047515 | F057890 | MVLSSEGLHLLSNVAIWRHDFETINDKNVAMWHRYYTDVINYYIMKETHREWIDNKNKEKKMKKEYSTSDGWEVFRFQISEEHRINRTFNTLNDFLDYWFHEYHNRQESSNRIEPCYMKKDTKKQSGQGPTGVQQEAVERYQKLCYTDKAI |
| Ga0214478_100487 | Ga0214478_10048722 | F094948 | MTAAWVLDCHYNIVHVPSSPQIITTGVGVAKCWADLEILAQSEARCRPTHGCKSATSTSTKARQVFINLLGTQAMPIHQYIC |
| Ga0214478_100673 | Ga0214478_10067319 | F100378 | MSDAYAIVGIPKSLPIHGMALTSTGRKIEHRKVVVDTQTYESNGSVSLEKLEFSPL |
| Ga0214478_101052 | Ga0214478_1010521 | F100378 | MSDAYATVHIPKSLPIHGMALTSTGRKIEHSKVVVGAQTYESNGSVSLKNWGFSRLRGVAVL |
| Ga0214478_102125 | Ga0214478_10212510 | F094948 | MTAAWVFYCHCRIVHVSSSPETITAWVGVANCWRADLEILPQSEVRCRPTHGCKSATSTSTKVLQVIINLLGT |
| Ga0214478_102370 | Ga0214478_1023702 | F057890 | MVLSSEGLHLLSNVAVWRHDFETINDKNVALWHRYYIDVINFYIMKENHREWIDNNNKKKEKKKEYSTSDGWDVIRFQVSEEHRINRPFNTLNDFLDYWFHEYHNRQESSRLEPIYMKKHTKKQPGQGPTGVQQEALERYQKLSYTDKAIYRAVAKEYFRKKK |
| Ga0214478_102473 | Ga0214478_1024733 | F057890 | MVLSSEGLHLLSNVAVWRHDTINDKNVAMWHRYYIDVINYYIMKETHREWIDNKNKEYSTPDGWEVFRFQVSEEHRINQTFMTVNDFLEYWLKVYNSRQESSRLELMYMKKHTKNQTGECPTGVQQEAVERYQKLCYTDKAIYRAIGKEYFRKKK |
| Ga0214478_102541 | Ga0214478_1025415 | F100378 | MSDAYSIVDIPKSLPIHGMALTSTGRKIERNKVVVGTQTYELISSISLENVGVSRLQGVGVLL |
| Ga0214478_102812 | Ga0214478_1028121 | F100378 | VDIPKSLPIHGMALTSTGRKIEHNKVVVGTQTSESLSWISLEKSGFSCLRGVAVLL |
| Ga0214478_103786 | Ga0214478_1037862 | F100378 | MSDAYAIVDIPKSLPIHGMALTSTDRKIEHNKVVVVTQTYESNGSVSLEKSGFSRP |
| Ga0214478_105023 | Ga0214478_1050231 | F000866 | FIADWDKIGKYRQEQTNRNTERENKRRRDYDYVVGGKIMIRKDGILRKGESRWQGPYTITQCHTNGTIRVQRGSKSERLH |
| Ga0214478_106373 | Ga0214478_1063731 | F100378 | MHMQIVDIPKSLPIHGMALTSTGRKIEHSKVVVGAQTSESLSSVSLEKSGFSIVFKV |
| Ga0214478_106373 | Ga0214478_1063732 | F100378 | MSDAYAKVDIPKYLPIHGMALTSTGRKIEHSKVVVGTQTSESLSSVSLKKSRDSLVFKV |
| Ga0214478_106373 | Ga0214478_1063733 | F100378 | MSDAYEIVDIPKSLPIHGMALTSTGRKIEHSKVVVGTQTYESLSSVSLEKSGFSCL |
| Ga0214478_106373 | Ga0214478_1063734 | F100378 | MSDAYAIVDIPKSLPIHGMALTSTDRKIEHSKVVLGTQTSESLCSVSLKKSRDSLVFKV |
| Ga0214478_106373 | Ga0214478_1063735 | F100378 | MSDAYAIVDIPKYLPIHGMALTSTGRKIEHSKVVVGTQTSESLSSVSLEKSGFSRLQGVGVLL |
| Ga0214478_106373 | Ga0214478_1063736 | F100378 | MSDAYAIVDIPKSLPIHGMALTSTGRKIEHSKVVVIGAQTSESLSSVSLEKSGFSIVFKV |
| Ga0214478_108141 | Ga0214478_1081412 | F100378 | MSDAYVIVDIPKSLPIHGIVLTSTGRKIEHNKVMRNTQTYELNSSVSLKIWDSLIFEV |
| Ga0214478_108141 | Ga0214478_1081413 | F100378 | MSDAYAIVGIPKSLPIHGMALTSTGRKIEHNKVVVDTQTYESNGSVSLEKLGFSPL |
| Ga0214478_108669 | Ga0214478_1086692 | F100378 | MSDAYASVHILKSLRIHGMALTSTGRKIEHSKVVVVTQTFESISSISLEKSGLSHL |
| Ga0214478_108734 | Ga0214478_1087341 | F057890 | LSSEGLHLLSNVAVWRHDFETINDKNVALWHRYYTDAINFYIMKETHREWIDNKNKEKKMKKEYSTSDGWEVFRFQISEEHRINRTFNNLNDFLDYWFHEYHNRQESSNRIEPCYMKKDTKKQSGQGPTGVQQEAVERYQKLCYTDKAIYRAIGKEYFRKKVVYDNN |
| Ga0214478_110181 | Ga0214478_1101811 | F094948 | WVLDCHYNIGHVLSSPQTTTRGVGVAKCWADLEILAQSEARCRPTHGCKSATDTSTKVLQVFINLLGTQAMPIHQYIC |
| Ga0214478_111097 | Ga0214478_1110972 | F094948 | MTAAWELDCHWNIAHVLSLPQTITTRVGVANCWADFEILAQSEARCLPTHGHKSAASTSRKV |
| Ga0214478_112121 | Ga0214478_1121211 | F100378 | MSDAYAIVDIPKSLSIHGMALTSTGRKIEHSKVVVGTQTYESLSSISLENVWDSLVFEV |
| Ga0214478_112954 | Ga0214478_1129541 | F100378 | SDAYAIVGIPKSLPIHGMALTSTGRKIEHNKVVVDTQTYESNDSVSLEKLEFSPL |
| Ga0214478_113294 | Ga0214478_1132941 | F057890 | MVLSSEGLHLLSSVAVWRHDFETINDKNVAMWHCYYIDVINFYITKENHREWIDDNNKKKEKKKEYSTSDGWDVIRFQVSEEHRINRTFNTLNDFLDYWFHECHNRQESSRLEPIYMKKHTKKQPGQGPTGVQQEALERYQKLSYTDKAIYRAVAKEYFRKKK |
| Ga0214478_119733 | Ga0214478_1197332 | F100378 | MSDAYATVDIPKSLPIHGMALTSTGRKIEHNKVVVATQTYESISLVSLENVGVSVFEV |
| Ga0214478_119924 | Ga0214478_1199242 | F100378 | MSDAYATVDIPKSLPIHGMALTSTGRKIEHNKVVVGTQTYESISLVSLENVGVSVFEV |
| Ga0214478_120827 | Ga0214478_1208271 | F100378 | MSDAYATVDIPKSLPIHGMALTSTGRKIEHRKVTLHTQTYESNGSVSLKFLGISCLRGV |
| Ga0214478_122717 | Ga0214478_1227172 | F100378 | MSDAYAIVDIPKSLPIHGMALTSTGRKIEHSKVVVGTQTNESLSSISLENVGFSRLQGVAVLL |
| Ga0214478_122717 | Ga0214478_1227173 | F100378 | NSTMSDAYAIVDIPKSLPIHGMALTSTGRKIEHSKVVVGTQTYESLSSISLENVGFSRLRGVAVLL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |