3300026764: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A2w-11 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026764
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095510 | Gp0072055 | Ga0207470
• Sample Name: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A2w-11 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 15355255
• Sequencing Scaffolds: 15
• Novel Protein Genes: 15
• Associated Families: 15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
Not Available	9
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1
All Organisms → cellular organisms → Archaea	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → agricultural field → agricultural soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Wisconsin, United States
• Coordinates
  • Lat. (^o): 43.3
  • Long. (^o): -89.38
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001033	Metagenome / Metatranscriptome	799	Y
F007536	Metagenome / Metatranscriptome	349	Y
F010565	Metagenome	302	Y
F017145	Metagenome / Metatranscriptome	242	Y
F024545	Metagenome / Metatranscriptome	205	Y
F029216	Metagenome / Metatranscriptome	189	Y
F038480	Metagenome	166	Y
F040185	Metagenome	162	N
F048397	Metagenome / Metatranscriptome	148	N
F054450	Metagenome / Metatranscriptome	140	Y
F055072	Metagenome / Metatranscriptome	139	N
F078804	Metagenome	116	N
F079360	Metagenome / Metatranscriptome	116	N
F092662	Metagenome / Metatranscriptome	107	Y
F099400	Metagenome / Metatranscriptome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0207470_100048	All Organisms → cellular organisms → Bacteria	1728
Ga0207470_100087	All Organisms → cellular organisms → Bacteria	1491
Ga0207470_101068	Not Available	786
Ga0207470_101127	All Organisms → cellular organisms → Bacteria → Proteobacteria	773
Ga0207470_101272	Not Available	740
Ga0207470_101280	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	738
Ga0207470_101543	Not Available	692
Ga0207470_101698	Not Available	668
Ga0207470_101850	Not Available	650
Ga0207470_102614	Not Available	571
Ga0207470_102794	All Organisms → cellular organisms → Archaea	556
Ga0207470_102825	Not Available	553
Ga0207470_102853	Not Available	551
Ga0207470_103061	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	535
Ga0207470_103616	Not Available	502

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207470_100048	Ga0207470_1000481	F099400	LTIVRHPCPMRILIWIVGLLALGTSLDSSLYGGAYTRAFVTTIQDMHRAFGLHLFG
Ga0207470_100087	Ga0207470_1000871	F007536	ALGQKAGAKPMGLPHRERSQGRAAMHGHEVASLPGEMGPPLGQSHERASPFLAKFGLSASLTTGRDAAHAVSGAPMALVLPATTSCIQYVRFTDEVPRRLVPVGRVNPGYKSHTKSRGHASETGTAFPRPRLKGCQQRQSRGARLRLAEGACSERQNLRVLLGPLGFMGPVSPTNAATKWRDGTSSRQLAGLLSNSPQQPKPGQAAVRSR
Ga0207470_101068	Ga0207470_1010683	F079360	MRQTLTVAAIAVLVFAAIAELVAAPSRHAAGRDTSVQPTISTYDLHTGYPGMNTLPVAEIPQP
Ga0207470_101127	Ga0207470_1011272	F038480	MKAILVSIVLYFAATAAHSMPISVLNANGLSATIPISDQCGDRCGSSRSYVKDRRSGVGGYSGGYVLVRDPLIQRRPFCPFGSYVACIASGAFCIDLCH
Ga0207470_101272	Ga0207470_1012721	F040185	PTPVVVVTDTIGAADSALPLSMKVTSYVPDTNIVLKGLAVGTTLTSGASVGDREWRINIEDLQNAYVIPPQGFVGPMAFVAELRDIDGHPLLRAPGQFTWTAVDPSSATAGKEPAEEEPPVTAVASAADAGNQQLIGQFVGQKEEVVLPKPRPIKHASLGGKATKPKKQIARAHGYKERMPRRDLGADTRWASNELPPHSLFSEPDRRRERRAIVDGIFRSLFYGGDANECEPATLERGTQKKSGD
Ga0207470_101280	Ga0207470_1012801	F001033	MCGPSLIVRLTIAVFVFLILGVASVIHAERPDSTAGTSNAGTRKLFIDPSSTSVALRGKASLIVSPLTHRDGNYVGDYQLKVRPYFFKSEKGSLLLAASDDAVRKLQAGTAINFTGQAVTHKDGRTHIVLGRATPSSRDRGSVTFSIVTDDAKIVFNTSYHFPAPRP
Ga0207470_101543	Ga0207470_1015432	F029216	GCTTLGGSAMYMLIVVIGVLSQGASVLPVGVTSQVVGKFKNLDECKAAAKQPHAAGPIADITVVTTWGATWYCTYSGTN
Ga0207470_101698	Ga0207470_1016981	F017145	MAARKSSHRHWMLRDIPRTYVLVVWLAFGAALLIYSNDWHPSGWSALRQEATATKPPVSVTEQYTGSIIIVPSRGEDCRQMMLDNRTGRMWDKGIVNCYEAVSRPEKGQRGGMSSLRMNAIGKAFNRRDE
Ga0207470_101850	Ga0207470_1018501	F092662	RIVLCIDASDGVRWEIAHVLQSGHAGKTLFFLNPSTDVQTRKRQLQEDFGVSAADLASIDVDRVLALRTTSTDQLILMVCDKPERDAYLVAARLAFEGRAGNLTMSAKGR
Ga0207470_102614	Ga0207470_1026141	F024545	DRMARPKKPKVQIKRTKTSLGWAYRIYLDGHYMGTGLTQASAREGAKRMFVTYERGRQMRRPLT
Ga0207470_102794	Ga0207470_1027941	F054450	MHDSLYGNYPLSNKHRPTPTVRPVNRSKEQLQEFRDIISNPRTSQDSKKRFMVEKGGG
Ga0207470_102825	Ga0207470_1028253	F010565	MSDARHEVDERWILRTELLWAFGVGVFIAAALGMILFT
Ga0207470_102853	Ga0207470_1028531	F055072	PNLRSGKNRAASFLIWFISGLYLLGMVWFLLSTVGDYSAQDTPPWLVSAVGACTVSYGILMVMFWPFENVSPEGRPERPVR
Ga0207470_103061	Ga0207470_1030611	F048397	VHNSTIFRAILEKNKCDKCNLTIHPNFMGNHKCDHQNCPICKNPITPSQYWPHIRSHPGHENDSPPLPKRNMYENRNNENHSGYGNYQRN
Ga0207470_103616	Ga0207470_1036161	F078804	KIFAEREVGMNFVYATLCSVAVLVLCGATAPAFGYVKKAPTNQSAGKAIKKQASVFDSDGYRLVSPNSTMRCAQTLRGTLDCKE